Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim05G0149200 Rhododendron simsii HOM05D003281 ORTHO05D004128 4.4e-74 281.2 140 100.0
Rhsim01G0111700 Rhododendron simsii HOM05D003281 ORTHO05D004128 1.3e-70 269.6 138 96.4
vmacro14667 Vaccinium macrocarpon HOM05D003281 ORTHO05D004128 3.5e-63 245.0 129 93.0
Rhsim01G0054700 Rhododendron simsii HOM05D003281 ORTHO05D004128 1.1e-61 240.0 129 91.5
TAR626G1141 Trochodendron aralioides HOM05D003281 ORTHO05D004128 8.1e-60 233.8 129 86.8
CiPaw.10G062800 Carya illinoinensis HOM05D003281 ORTHO05D004128 4.0e-59 231.5 129 86.0
Rhsim04G0089900 Rhododendron simsii HOM05D003281 ORTHO05D004128 4.0e-59 231.5 129 89.1
Actinidia11434 Actinidia chinensis HOM05D003281 ORTHO05D004128 8.9e-59 230.3 129 86.0
Nitab4.5_0000443g0070 Nicotiana tabacum HOM05D003281 ORTHO05D004128 2.0e-58 229.2 129 83.7
Nitab4.5_0006246g0040 Nicotiana tabacum HOM05D003281 ORTHO05D004128 2.0e-58 229.2 129 83.7
CAN.G514.6 Capsicum annuum HOM05D003281 ORTHO05D004128 3.4e-58 228.4 129 83.7
Peaxi162Scf00199g00516 Petunia axillaris HOM05D003281 ORTHO05D004128 4.4e-58 228.0 129 83.7
Solyc08g075160.3 Solanum lycopersicum HOM05D003281 ORTHO05D004128 4.4e-58 228.0 129 83.7
PGSC0003DMG400020817 Solanum tuberosum HOM05D003281 ORTHO05D004128 4.4e-58 228.0 129 83.7
Aqoxy5G04041 Aquilegia oxysepala HOM05D003281 ORTHO05D004128 5.8e-58 227.6 129 82.9
Hma1.2p1_0181F.1_g079910 Hydrangea macrophylla HOM05D003281 ORTHO05D004128 5.8e-58 227.6 129 86.0
FvH4_7g04800 Fragaria vesca HOM05D003281 ORTHO05D004128 7.5e-58 227.3 129 83.7
Cc02_g09680 Coffea canephora HOM05D003281 ORTHO05D004128 1.3e-57 226.5 129 83.7
Gohir.D01G111800 Gossypium hirsutum HOM05D003281 ORTHO05D004128 1.3e-57 226.5 129 85.3
Gorai.002G136700 Gossypium raimondii HOM05D003281 ORTHO05D004128 1.3e-57 226.5 129 85.3
Lsat_1_v5_gn_4_97540 Lactuca sativa HOM05D003281 ORTHO05D004128 1.3e-57 226.5 129 84.5
Dinv18011 Davidia involucrata HOM05D003281 ORTHO05D004128 1.7e-57 226.1 129 84.5
MD12G1033700 Malus domestica HOM05D003281 ORTHO05D004128 1.7e-57 226.1 129 83.7
Sopen08g023790 Solanum pennellii HOM05D003281 ORTHO05D004128 1.7e-57 226.1 129 82.9
GSVIVG01012120001 Vitis vinifera HOM05D003281 ORTHO05D004128 1.7e-57 226.1 129 85.3
Manes.08G044300 Manihot esculenta HOM05D003281 ORTHO05D004128 2.2e-57 225.7 129 82.9
RcHm_v2.0_Chr2g0124681 Rosa chinensis HOM05D003281 ORTHO05D004128 2.2e-57 225.7 129 83.7
Migut.B00724 Erythranthe guttata HOM05D003281 ORTHO05D004128 2.9e-57 225.3 129 82.9
FAN20G2649 Fragaria x ananassa HOM05D003281 ORTHO05D004128 2.9e-57 225.3 129 82.9
FAN26G3221 Fragaria x ananassa HOM05D003281 ORTHO05D004128 2.9e-57 225.3 129 82.9
Gohir.A12G048600 Gossypium hirsutum HOM05D003281 ORTHO05D004128 2.9e-57 225.3 129 84.5
Gohir.D12G047400 Gossypium hirsutum HOM05D003281 ORTHO05D004128 2.9e-57 225.3 129 84.5
Gorai.008G050100 Gossypium raimondii HOM05D003281 ORTHO05D004128 2.9e-57 225.3 129 84.5
CSS0018694 Camellia sinensis var. sinensis HOM05D003281 ORTHO05D004128 3.7e-57 224.9 129 84.5
Ciclev10014669m.g Citrus clementina HOM05D003281 ORTHO05D004128 4.9e-57 224.6 129 82.9
MD14G1035300 Malus domestica HOM05D003281 ORTHO05D004128 4.9e-57 224.6 129 82.9
FvH4_1g24580 Fragaria vesca HOM05D003281 ORTHO05D004128 6.4e-57 224.2 129 82.2
FAN19G0112 Fragaria x ananassa HOM05D003281 ORTHO05D004128 6.4e-57 224.2 129 82.2
Gohir.A01G124000 Gossypium hirsutum HOM05D003281 ORTHO05D004128 6.4e-57 224.2 129 84.5
Cc02_g28610 Coffea canephora HOM05D003281 ORTHO05D004128 8.3e-57 223.8 129 84.5
Dinv01965 Davidia involucrata HOM05D003281 ORTHO05D004128 8.3e-57 223.8 129 83.7
DCAR_001294 Daucus carota HOM05D003281 ORTHO05D004128 1.1e-56 223.4 129 82.9
Prupe.5G007600 Prunus persica HOM05D003281 ORTHO05D004128 1.1e-56 223.4 129 82.2
QL11p013631 Quercus lobata HOM05D003281 ORTHO05D004128 1.1e-56 223.4 129 82.9
Thecc.02G006200 Theobroma cacao HOM05D003281 ORTHO05D004128 1.1e-56 223.4 129 82.9
Cfa000681 Carpinus fangiana HOM05D003281 ORTHO05D004128 1.4e-56 223.0 129 82.9
FAN23G2047 Fragaria x ananassa HOM05D003281 ORTHO05D004128 1.4e-56 223.0 129 82.2
Lj2A344T44 Lonicera japonica HOM05D003281 ORTHO05D004128 1.4e-56 223.0 129 83.7
RcHm_v2.0_Chr1g0326741 Rosa chinensis HOM05D003281 ORTHO05D004128 1.4e-56 223.0 129 82.2
AUR62015011 Chenopodium quinoa HOM05D003281 ORTHO05D004128 1.9e-56 222.6 129 81.4
Cc01_g05380 Coffea canephora HOM05D003281 ORTHO05D004128 1.9e-56 222.6 129 82.9
CsaV3_1G010170 Cucumis sativus L. HOM05D003281 ORTHO05D004128 1.9e-56 222.6 129 82.9
SalBow1G2706 Salvia bowleyana HOM05D003281 ORTHO05D004128 1.9e-56 222.6 129 82.9
TWI34G0807 Tripterygium wilfordii HOM05D003281 ORTHO05D004128 1.9e-56 222.6 129 82.2
Atru.chr10.431 Acer truncatum HOM05D003281 ORTHO05D004128 2.4e-56 222.2 129 82.2
EL10Ac1g01734 Beta vulgaris HOM05D003281 ORTHO05D004128 2.4e-56 222.2 129 81.4
PGR004G1969 Punica granatum HOM05D003281 ORTHO05D004128 2.4e-56 222.2 129 81.4
SalBow3G0238 Salvia bowleyana HOM05D003281 ORTHO05D004128 2.4e-56 222.2 129 82.9
THA.LOC104798558 Tarenaya hassleriana HOM05D003281 ORTHO05D004128 3.2e-56 221.9 129 82.2
TPR.G6549 Trifolium pratense HOM05D003281 ORTHO05D004128 3.2e-56 221.9 129 82.9
MSTRG.16470 Avicennia marina HOM05D003281 ORTHO05D004128 4.1e-56 221.5 129 82.2
CANSAT56G2301 Cannabis sativa HOM05D003281 ORTHO05D004128 4.1e-56 221.5 129 81.4
CANSAT56G3182 Cannabis sativa HOM05D003281 ORTHO05D004128 4.1e-56 221.5 129 81.4
Cfa000680 Carpinus fangiana HOM05D003281 ORTHO05D004128 4.1e-56 221.5 129 82.9
Duzib132G1085 Durio zibethinus HOM05D003281 ORTHO05D004128 5.4e-56 221.1 129 82.9
MELO3C002406.2 Cucumis melo HOM05D003281 ORTHO05D004128 7.1e-56 220.7 129 82.2
Glyma.11G158400 Glycine max HOM05D003281 ORTHO05D004128 7.1e-56 220.7 129 81.4
Medtr5g095820 Medicago truncatula HOM05D003281 ORTHO05D004128 7.1e-56 220.7 129 82.2
EL10Ac5g10906 Beta vulgaris HOM05D003281 ORTHO05D004128 9.2e-56 220.3 129 81.4
Ca_18076_v3 Cicer arietinum L. HOM05D003281 ORTHO05D004128 9.2e-56 220.3 129 81.4
Medtr3g013710 Medicago truncatula HOM05D003281 ORTHO05D004128 9.2e-56 220.3 129 81.4
Cpa.g.sc30.140 Carica papaya HOM05D003281 ORTHO05D004128 1.2e-55 219.9 129 79.8
COL.COLO4_17637 Corchorus olitorius HOM05D003281 ORTHO05D004128 1.2e-55 219.9 129 83.7
Glyma.04G133100 Glycine max HOM05D003281 ORTHO05D004128 1.2e-55 219.9 129 81.4
Ah.01g022040 Amaranthus hybridus HOM05D003281 ORTHO05D004128 1.6e-55 219.5 129 81.4
HanXRQChr13g0406911 Helianthus annuus HOM05D003281 ORTHO05D004128 1.6e-55 219.5 129 80.6
Psat5g222920 Pisum sativum HOM05D003281 ORTHO05D004128 1.6e-55 219.5 129 82.2
SalBow1G7114 Salvia bowleyana HOM05D003281 ORTHO05D004128 1.6e-55 219.5 129 82.2
TPR.G1398 Trifolium pratense HOM05D003281 ORTHO05D004128 1.6e-55 219.5 129 81.4
VMungo1080G1879 Vigna mungo HOM05D003281 ORTHO05D004128 1.6e-55 219.5 129 81.4
Carub.0004s1674 Capsella rubella HOM05D003281 ORTHO05D004128 2.1e-55 219.2 129 81.4
ECA232G1899 Erigeron canadensis HOM05D003281 ORTHO05D004128 2.1e-55 219.2 129 79.8
Phvul.005G018700 Phaseolus vulgaris HOM05D003281 ORTHO05D004128 2.1e-55 219.2 129 81.4
BcaB02g09485 Brassica carinata HOM05D003281 ORTHO05D004128 2.7e-55 218.8 129 79.8
A05p10660 Brassica napus HOM05D003281 ORTHO05D004128 2.7e-55 218.8 129 79.8
C04p13760 Brassica napus HOM05D003281 ORTHO05D004128 2.7e-55 218.8 129 79.8
BolC4t22966H Brassica oleracea HOM05D003281 ORTHO05D004128 2.7e-55 218.8 129 79.8
PSO017G0093 Papaver somniferum HOM05D003281 ORTHO05D004128 2.7e-55 218.8 129 80.6
Sed0004438 Sechium edule HOM05D003281 ORTHO05D004128 2.7e-55 218.8 129 80.6
SGA_v2.0_scaffold254G45247 Striga asiatica HOM05D003281 ORTHO05D004128 2.7e-55 218.8 129 79.8
Nn7g38195 Nelumbo nucifera HOM05D003281 ORTHO05D004128 3.5e-55 218.4 129 80.6
Sabra10G0084400 Salix brachista HOM05D003281 ORTHO05D004128 3.5e-55 218.4 129 79.8
Thhalv10016407m.g Eutrema salsugineum HOM05D003281 ORTHO05D004128 4.6e-55 218.0 129 80.6
THA.LOC104814352 Tarenaya hassleriana HOM05D003281 ORTHO05D004128 6.0e-55 217.6 129 79.8
Duzib248G1352 Durio zibethinus HOM05D003281 ORTHO05D004128 7.8e-55 217.2 129 81.4
FAN01G0101 Fragaria x ananassa HOM05D003281 ORTHO05D004128 7.8e-55 217.2 129 81.4
Potri.010G114400 Populus trichocarpa HOM05D003281 ORTHO05D004128 7.8e-55 217.2 129 79.1
Sc26g0004530 Simmondsia chinensis HOM05D003281 ORTHO05D004128 7.8e-55 217.2 128 81.2
arahy.Tifrunner.gnm1.ann1.D0LQY1 Arachis hypogaea HOM05D003281 ORTHO05D004128 1.0e-54 216.9 129 80.6
Eucgr.A00708 Eucalyptus grandis HOM05D003281 ORTHO05D004128 1.0e-54 216.9 129 80.6
AT2G35040 Arabidopsis thaliana HOM05D003281 ORTHO05D004128 1.3e-54 216.5 129 79.8
AL4G31070 Arabidopsis lyrata HOM05D003281 ORTHO05D004128 2.3e-54 215.7 129 78.3
arahy.Tifrunner.gnm1.ann1.F6IBWZ Arachis hypogaea HOM05D003281 ORTHO05D004128 6.6e-54 214.2 129 79.8
PSO675G6428 Papaver somniferum HOM05D003281 ORTHO05D004128 6.6e-54 214.2 129 78.3
Eucgr.A00733 Eucalyptus grandis HOM05D003281 ORTHO05D004128 1.5e-53 213.0 129 79.1
CARHR129210 Cardamine hirsuta HOM05D003281 ORTHO05D004128 1.9e-53 212.6 129 78.3
SEGI_14905 Sequoiadendron giganteum HOM05D003281 ORTHO05D004128 1.9e-53 212.6 129 79.1
ATR0150G008 Amborella trichopoda HOM05D003281 ORTHO05D004128 3.3e-53 211.8 129 76.0
Lalb_Chr07g0189731 Lupinus albus HOM05D003281 ORTHO05D004128 4.3e-53 211.5 127 78.7
Rhsim04G0114800 Rhododendron simsii HOM05D003281 ORTHO05D004128 7.3e-53 210.7 116 89.7
Aa31LG9G16170 Aethionema arabicum HOM05D003281 ORTHO05D004128 9.5e-53 210.3 129 76.0
Lj3g0002589 Lotus japonicus HOM05D003281 ORTHO05D004128 1.6e-52 209.5 129 76.7
Os08g0206600 Oryza sativa ssp. japonica HOM05D003281 ORTHO05D004128 1.6e-52 209.5 129 77.5
CDE06G0368 Ceratophyllum demersum HOM05D003281 ORTHO05D004128 3.6e-52 208.4 129 77.5
ClCG03G004230 Citrullus lanatus HOM05D003281 ORTHO05D004128 2.3e-51 205.7 151 68.9
BraA05t20007Z Brassica rapa HOM05D003281 ORTHO05D004128 5.2e-51 204.5 155 66.5
Zm00001eb070920 Zea mays HOM05D003281 ORTHO05D004128 1.5e-50 203.0 129 74.4
CDE02G3604 Ceratophyllum demersum HOM05D003281 ORTHO05D004128 1.3e-49 199.9 129 76.7
unitig_46.g18363 Utricularia gibba HOM05D005736 ORTHO05D007215 1.7e-49 199.5 129 72.9
unitig_46.g18376 Utricularia gibba HOM05D003281 ORTHO05D004128 1.7e-49 199.5 129 72.9
unitig_48.g30291 Utricularia gibba HOM05D003281 ORTHO05D004128 1.7e-49 199.5 129 72.9
AUR62034379 Chenopodium quinoa HOM05D003281 ORTHO05D004128 1.1e-48 196.8 145 69.7
Zm00001eb413740 Zea mays HOM05D003281 ORTHO05D004128 2.1e-47 192.6 132 72.0
AUR62022320 Chenopodium quinoa HOM05D003281 ORTHO05D004128 4.6e-47 191.4 129 72.9
Rhsim04G0092800 Rhododendron simsii HOM05D003281 ORTHO05D004128 6.0e-47 191.0 135 74.8
Hund10057 Selenicereus undatus HOM05D003281 ORTHO05D004128 2.3e-46 189.1 115 79.1
SMO228G0099 Selaginella moellendorffii HOM05D003281 ORTHO05D004128 3.0e-46 188.7 129 68.2
Rhsim04G0089200 Rhododendron simsii HOM05D003281 ORTHO05D004128 6.6e-46 187.6 141 72.3
Pp3c4_1350 Physcomitrium patens HOM05D003281 ORTHO05D004128 2.1e-44 182.6 129 65.9
Pp3c12_24590 Physcomitrium patens HOM05D003281 ORTHO05D004128 3.6e-44 181.8 129 65.1
Mapoly0032s0021 Marchantia polymorpha HOM05D003281 ORTHO05D004128 1.4e-43 179.9 129 64.3
AagrBONN_evm.TU.Sc2ySwM_368.3406 Anthoceros agrestis HOM05D003281 ORTHO05D004128 3.2e-40 168.7 129 60.5
CBR_g50928 Chara braunii HOM05D003281 ORTHO05D004128 9.3e-40 167.2 129 62.8
HPP92_009499 Vanilla planifolia HOM05D003281 ORTHO05D004128 3.9e-38 161.8 129 65.1
FAN15G0156 Fragaria x ananassa HOM05D003281 ORTHO05D004128 8.7e-38 160.6 97 77.3
PRCOL_00001991 Prasinoderma coloniale HOM05D003281 ORTHO05D004128 4.3e-37 158.3 129 58.9
Cre12.g537581 Chlamydomonas reinhardtii HOM05D003281 ORTHO05D004128 6.2e-36 154.5 129 58.9
Rhsim01G0111500 Rhododendron simsii HOM05D003281 ORTHO05D004128 6.9e-35 151.0 130 63.8
MCO04G009 Micromonas commoda HOM05D003281 ORTHO05D004128 2.0e-34 149.4 129 56.6
Psat5g186600 Pisum sativum HOM05D003281 ORTHO05D004128 5.4e-32 141.4 85 78.8
HPP92_009464 Vanilla planifolia HOM05D003281 ORTHO05D004128 1.6e-31 139.8 129 58.9
MBI14_g44727_MAGBIO Magnolia biondii HOM05D003281 ORTHO05D004128 5.3e-27 124.8 87 72.4
BcaC02g11585 Brassica carinata HOM05D003281 ORTHO05D004128 5.8e-26 121.3 69 79.7
SGA_v2.0_scaffold6G03254 Striga asiatica HOM05D003281 ORTHO05D004128 1.7e-25 119.8 73 76.7
SGA_v2.0_scaffold202G41492 Striga asiatica HOM05D003281 ORTHO05D004128 3.8e-25 118.6 73 75.3
FAN06G3868 Fragaria x ananassa HOM05D003281 ORTHO05D004128 5.1e-22 108.2 129 49.6
FAN03G3028 Fragaria x ananassa HOM05D003281 ORTHO05D004128 2.5e-21 105.9 145 44.8
unitig_46.g18256 Utricularia gibba HOM05D003281 ORTHO05D004128 1.3e-20 103.6 73 65.8
Eucgr.A00699 Eucalyptus grandis HOM05D003281 ORTHO05D004128 1.5e-18 96.7 65 69.2
Pp3s32_111 Physcomitrium patens HOM05D003281 ORTHO05D004128 2.6e-18 95.9 126 41.3
Eucgr.A00697 Eucalyptus grandis HOM05D003281 ORTHO05D004128 2.5e-16 89.4 65 63.1
Haze_26981 Corylus avellana HOM05D003281 ORTHO05D004128 1.3e-14 83.6 128 38.3
MD12G1088800 Malus domestica HOM05D003281 ORTHO05D004128 5.1e-14 81.6 53 75.5
BcaB06g28812 Brassica carinata HOM05D003281 ORTHO05D004128 1.1e-11 73.9 64 60.9


User provided reference genes

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