Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim05G0148200 Rhododendron simsii HOM05D003910 ORTHO05D004622 4.9e-241 837.4 430 100.0
CSS0022256 Camellia sinensis var. sinensis HOM05D003910 ORTHO05D004622 2.0e-210 735.7 446 82.3
Haze_17499 Corylus avellana HOM05D003910 ORTHO05D004622 1.1e-208 729.9 429 83.7
Dinv07208 Davidia involucrata HOM05D003910 ORTHO05D004622 1.1e-208 729.9 431 85.6
Cfa018581 Carpinus fangiana HOM05D003910 ORTHO05D004622 3.0e-206 721.8 429 83.0
CiPaw.16G066200 Carya illinoinensis HOM05D003910 ORTHO05D004622 4.9e-201 704.5 429 80.9
PGR044G2730 Punica granatum HOM05D003910 ORTHO05D004622 6.5e-201 704.1 430 82.8
CANSAT25G1111 Cannabis sativa HOM05D003910 ORTHO05D004622 1.4e-200 703.0 430 83.5
COL.COLO4_24698 Corchorus olitorius HOM05D003910 ORTHO05D004622 1.4e-200 703.0 429 83.2
Thecc.08G127500 Theobroma cacao HOM05D003910 ORTHO05D004622 2.5e-200 702.2 429 83.2
Nitab4.5_0005516g0010 Nicotiana tabacum HOM05D003910 ORTHO05D004622 5.5e-200 701.0 431 85.6
Sopen08g022680 Solanum pennellii HOM05D003910 ORTHO05D004622 2.1e-199 699.1 431 84.5
Solyc08g069030.4 Solanum lycopersicum HOM05D003910 ORTHO05D004622 1.0e-198 696.8 431 82.4
PGSC0003DMG400029545 Solanum tuberosum HOM05D003910 ORTHO05D004622 1.8e-198 696.0 431 82.1
Cpa.g.sc64.96 Carica papaya HOM05D003910 ORTHO05D004622 2.3e-198 695.7 429 82.1
Sabra05G0135000 Salix brachista HOM05D003910 ORTHO05D004622 3.9e-198 694.9 432 80.3
Nitab4.5_0000502g0120 Nicotiana tabacum HOM05D003910 ORTHO05D004622 5.1e-198 694.5 427 85.2
Gohir.D05G237801 Gossypium hirsutum HOM05D003910 ORTHO05D004622 6.7e-198 694.1 429 82.3
Gorai.009G246200 Gossypium raimondii HOM05D003910 ORTHO05D004622 6.7e-198 694.1 429 82.3
HanXRQChr17g0559761 Helianthus annuus HOM05D003910 ORTHO05D004622 6.7e-198 694.1 431 81.9
CAN.G908.4 Capsicum annuum HOM05D003910 ORTHO05D004622 9.7e-197 690.3 431 80.7
Gohir.A05G235500 Gossypium hirsutum HOM05D003910 ORTHO05D004622 2.8e-196 688.7 429 81.6
TAR629G0788 Trochodendron aralioides HOM05D003910 ORTHO05D004622 2.8e-196 688.7 432 82.9
MSTRG.25378 Avicennia marina HOM05D003910 ORTHO05D004622 2.4e-195 685.6 428 82.7
Prupe.1G494300 Prunus persica HOM05D003910 ORTHO05D004622 3.1e-195 685.3 429 83.9
THA.LOC104813147 Tarenaya hassleriana HOM05D003910 ORTHO05D004622 3.1e-195 685.3 430 81.4
QL09p034136 Quercus lobata HOM05D003910 ORTHO05D004622 6.9e-195 684.1 429 81.8
Potri.002G082300 Populus trichocarpa HOM05D003910 ORTHO05D004622 1.5e-194 682.9 432 81.9
Dinv27301 Davidia involucrata HOM05D003910 ORTHO05D004622 4.5e-194 681.4 382 88.0
Thhalv10018595m.g Eutrema salsugineum HOM05D003910 ORTHO05D004622 7.7e-194 680.6 429 80.0
CARHR062800 Cardamine hirsuta HOM05D003910 ORTHO05D004622 1.3e-193 679.9 428 80.1
Duzib041G0414 Durio zibethinus HOM05D003910 ORTHO05D004622 1.3e-193 679.9 429 80.7
Lsat_1_v5_gn_8_141520 Lactuca sativa HOM05D003910 ORTHO05D004622 1.3e-193 679.9 427 80.8
Sp5g24850 Schrenkiella parvula HOM05D003910 ORTHO05D004622 2.2e-193 679.1 429 79.3
Nn4g23592 Nelumbo nucifera HOM05D003910 ORTHO05D004622 3.8e-193 678.3 419 81.1
PSO384G4520 Papaver somniferum HOM05D003910 ORTHO05D004622 5.0e-193 677.9 433 81.8
MD08G1161600 Malus domestica HOM05D003910 ORTHO05D004622 6.5e-193 677.6 420 84.3
PSO339G3693 Papaver somniferum HOM05D003910 ORTHO05D004622 6.5e-193 677.6 433 81.8
Carub.0002s1641 Capsella rubella HOM05D003910 ORTHO05D004622 1.4e-192 676.4 428 79.9
GSVIVG01008851001 Vitis vinifera HOM05D003910 ORTHO05D004622 1.4e-192 676.4 429 80.7
SGA_v2.0_scaffold52G18960 Striga asiatica HOM05D003910 ORTHO05D004622 1.9e-192 676.0 439 78.6
MELO3C008086.2 Cucumis melo HOM05D003910 ORTHO05D004622 3.2e-192 675.2 429 80.2
MD15G1346700 Malus domestica HOM05D003910 ORTHO05D004622 2.1e-191 672.5 430 81.4
AL2G28910 Arabidopsis lyrata HOM05D003910 ORTHO05D004622 2.7e-191 672.2 428 77.6
Sabra02G0064500 Salix brachista HOM05D003910 ORTHO05D004622 3.6e-191 671.8 432 80.8
AT1G69740 Arabidopsis thaliana HOM05D003910 ORTHO05D004622 6.1e-191 671.0 428 77.6
Lj7A342T56 Lonicera japonica HOM05D003910 ORTHO05D004622 7.9e-191 670.6 370 90.8
Manes.18G078475 Manihot esculenta HOM05D003910 ORTHO05D004622 7.9e-191 670.6 430 80.2
AUR62014326 Chenopodium quinoa HOM05D003910 ORTHO05D004622 1.8e-190 669.5 429 81.8
C06p43500 Brassica napus HOM05D003910 ORTHO05D004622 3.0e-190 668.7 429 78.6
BolC6t39425H Brassica oleracea HOM05D003910 ORTHO05D004622 3.0e-190 668.7 429 78.6
BcaB03g14749 Brassica carinata HOM05D003910 ORTHO05D004622 5.1e-190 667.9 429 79.0
ClCG11G008960 Citrullus lanatus HOM05D003910 ORTHO05D004622 5.1e-190 667.9 430 79.8
Manes.02G164600 Manihot esculenta HOM05D003910 ORTHO05D004622 6.7e-190 667.5 419 82.1
AUR62019066 Chenopodium quinoa HOM05D003910 ORTHO05D004622 8.8e-190 667.2 429 81.8
BcaC08g46419 Brassica carinata HOM05D003910 ORTHO05D004622 1.1e-189 666.8 429 78.3
BraA07t31189Z Brassica rapa HOM05D003910 ORTHO05D004622 1.1e-189 666.8 429 80.4
Migut.C01121 Erythranthe guttata HOM05D003910 ORTHO05D004622 1.5e-189 666.4 409 84.4
CsaV3_2G033150 Cucumis sativus L. HOM05D003910 ORTHO05D004622 2.5e-189 665.6 429 79.7
ECA233G1142 Erigeron canadensis HOM05D003910 ORTHO05D004622 3.3e-189 665.2 430 80.7
Atru.chr13.1495 Acer truncatum HOM05D003910 ORTHO05D004622 5.7e-189 664.5 453 77.7
A07p36130 Brassica napus HOM05D003910 ORTHO05D004622 5.7e-189 664.5 431 79.1
EL10Ac1g01030 Beta vulgaris HOM05D003910 ORTHO05D004622 7.4e-189 664.1 451 79.6
TWI60G1334 Tripterygium wilfordii HOM05D003910 ORTHO05D004622 9.7e-189 663.7 433 80.1
Ciclev10001195m.g Citrus clementina HOM05D003910 ORTHO05D004622 8.2e-188 660.6 436 78.0
TWI32G0928 Tripterygium wilfordii HOM05D003910 ORTHO05D004622 1.4e-187 659.8 440 78.0
Cc08_g06800 Coffea canephora HOM05D003910 ORTHO05D004622 3.1e-187 658.7 437 78.7
CDE10G0179 Ceratophyllum demersum HOM05D003910 ORTHO05D004622 4.1e-187 658.3 426 77.5
Sed0003239 Sechium edule HOM05D003910 ORTHO05D004622 9.1e-187 657.1 429 78.3
SalBow7G1186 Salvia bowleyana HOM05D003910 ORTHO05D004622 2.0e-186 656.0 458 75.8
Ah.15g093760 Amaranthus hybridus HOM05D003910 ORTHO05D004622 2.6e-186 655.6 448 75.2
Oeu028562.1 Olea europaea HOM05D003910 ORTHO05D004622 1.0e-185 653.7 414 82.1
DCAR_016682 Daucus carota HOM05D003910 ORTHO05D004622 2.9e-185 652.1 387 86.0
Aa31LG11G8660 Aethionema arabicum HOM05D003910 ORTHO05D004622 6.5e-185 651.0 383 84.1
Medtr3g088610 Medicago truncatula HOM05D003910 ORTHO05D004622 4.7e-183 644.8 382 86.4
Eucgr.F03796 Eucalyptus grandis HOM05D003910 ORTHO05D004622 1.8e-182 642.9 414 80.9
VMungo1309G0189 Vigna mungo HOM05D003910 ORTHO05D004622 3.0e-182 642.1 430 78.8
FAN15G2864 Fragaria x ananassa HOM05D003910 ORTHO05D004622 7.4e-181 637.5 419 78.3
Phvul.009G127100 Phaseolus vulgaris HOM05D003910 ORTHO05D004622 7.4e-181 637.5 413 80.1
Duzib116G0657 Durio zibethinus HOM05D003910 ORTHO05D004622 2.8e-180 635.6 426 77.0
Lj1g0017187 Lotus japonicus HOM05D003910 ORTHO05D004622 1.4e-179 633.3 430 77.4
Lalb_Chr11g0066041 Lupinus albus HOM05D003910 ORTHO05D004622 3.1e-179 632.1 384 84.6
Glyma.04G247700 Glycine max HOM05D003910 ORTHO05D004622 9.1e-179 630.6 385 85.2
Aqoxy3G03785 Aquilegia oxysepala HOM05D003910 ORTHO05D004622 4.5e-178 628.2 428 76.9
Peaxi162Scf00288g00822 Petunia axillaris HOM05D003910 ORTHO05D004622 7.7e-178 627.5 431 78.7
RcHm_v2.0_Chr6g0296081 Rosa chinensis HOM05D003910 ORTHO05D004622 7.7e-178 627.5 419 79.5
FAN27G3176 Fragaria x ananassa HOM05D003910 ORTHO05D004622 5.0e-177 624.8 419 78.8
FAN20G2211 Fragaria x ananassa HOM05D003910 ORTHO05D004622 6.5e-177 624.4 419 79.0
Lalb_Chr08g0241321 Lupinus albus HOM05D003910 ORTHO05D004622 8.5e-177 624.0 432 77.3
FvH4_2g27170 Fragaria vesca HOM05D003910 ORTHO05D004622 1.4e-176 623.2 419 78.8
FAN24G0257 Fragaria x ananassa HOM05D003910 ORTHO05D004622 1.4e-176 623.2 419 78.8
Hma1.2p1_0129F.1_g060300 Hydrangea macrophylla HOM05D003910 ORTHO05D004622 1.4e-176 623.2 399 82.5
unitig_46.g18101 Utricularia gibba HOM05D003910 ORTHO05D004622 1.2e-175 620.2 335 89.9
TPR.G16047 Trifolium pratense HOM05D003910 ORTHO05D004622 1.6e-175 619.8 414 79.2
Ca_16573_v3 Cicer arietinum L. HOM05D003910 ORTHO05D004622 3.9e-174 615.1 414 77.5
Ca_29570_v3 Cicer arietinum L. HOM05D003910 ORTHO05D004622 3.9e-174 615.1 414 77.5
Psat5g087720 Pisum sativum HOM05D003910 ORTHO05D004622 5.2e-174 614.8 327 91.1
ATR0691G248 Amborella trichopoda HOM05D003910 ORTHO05D004622 3.3e-173 612.1 430 73.3
HPP92_019462 Vanilla planifolia HOM05D003910 ORTHO05D004622 2.9e-169 599.0 395 76.2
Os06g0704600 Oryza sativa ssp. japonica HOM05D003910 ORTHO05D004622 4.2e-168 595.1 429 72.0
Zm00001eb227310 Zea mays HOM05D003910 ORTHO05D004622 2.1e-167 592.8 363 81.0
AagrBONN_evm.TU.Sc2ySwM_117.3949 Anthoceros agrestis HOM05D003910 ORTHO05D004622 1.0e-166 590.5 419 72.3
SHI34070 Sapria himalayana HOM05D003910 ORTHO05D004622 1.8e-166 589.7 399 74.4
arahy.Tifrunner.gnm1.ann1.LMC2LS Arachis hypogaea HOM05D003910 ORTHO05D004622 2.0e-165 586.3 386 79.8
arahy.Tifrunner.gnm1.ann1.YMC104 Arachis hypogaea HOM05D003910 ORTHO05D004622 2.0e-165 586.3 386 79.8
MBI14_g37526_MAGBIO Magnolia biondii HOM05D003910 ORTHO05D004622 2.6e-165 585.9 429 72.0
Aqoxy6G02874 Aquilegia oxysepala HOM05D003910 ORTHO05D004622 1.7e-164 583.2 408 72.1
SMO147G0120 Selaginella moellendorffii HOM05D003910 ORTHO05D004622 4.1e-163 578.6 364 76.9
Oeu059440.1 Olea europaea HOM05D003910 ORTHO05D004622 2.0e-162 576.2 383 79.9
Pp3c4_13690 Physcomitrium patens HOM05D003910 ORTHO05D004622 3.5e-162 575.5 361 77.3
MBI14_g21210_MAGBIO Magnolia biondii HOM05D003910 ORTHO05D004622 3.8e-161 572.0 313 87.9
Mapoly0065s0095 Marchantia polymorpha HOM05D003910 ORTHO05D004622 6.5e-161 571.2 399 71.9
Pp3c12_10600 Physcomitrium patens HOM05D003910 ORTHO05D004622 8.5e-161 570.9 396 72.2
CDE10G1335 Ceratophyllum demersum HOM05D003910 ORTHO05D004622 6.3e-156 554.7 365 75.6
PSO063G2338 Papaver somniferum HOM05D003910 ORTHO05D004622 7.8e-146 521.2 281 91.1
Actinidia29473 Actinidia chinensis HOM05D003910 ORTHO05D004622 1.1e-144 517.3 369 74.8
SEGI_23261 Sequoiadendron giganteum HOM05D003910 ORTHO05D004622 3.3e-144 515.8 330 77.3
Sc16g0000040 Simmondsia chinensis HOM05D003910 ORTHO05D004622 1.6e-143 513.5 352 77.0
CARHR035900 Cardamine hirsuta HOM05D003910 ORTHO05D004622 3.3e-136 489.2 327 73.1
Thhalv10012213m.g Eutrema salsugineum HOM05D003910 ORTHO05D004622 3.3e-136 489.2 439 58.8
CSS0027293 Camellia sinensis var. sinensis HOM05D003910 ORTHO05D004622 1.2e-135 487.3 351 72.6
Carub.0001s3515 Capsella rubella HOM05D003910 ORTHO05D004622 1.4e-134 483.8 335 71.3
BcaB07g33952 Brassica carinata HOM05D003910 ORTHO05D004622 1.8e-134 483.4 430 59.5
Glyma.06G115000 Glycine max HOM05D003910 ORTHO05D004622 1.8e-134 483.4 307 79.2
AL1G52270 Arabidopsis lyrata HOM05D003910 ORTHO05D004622 3.4e-133 479.2 427 60.0
Sp1g33510 Schrenkiella parvula HOM05D003910 ORTHO05D004622 3.4e-133 479.2 429 61.3
AT1G44318 Arabidopsis thaliana HOM05D003910 ORTHO05D004622 2.9e-132 476.1 334 70.7
BcaC08g42844 Brassica carinata HOM05D003910 ORTHO05D004622 2.9e-132 476.1 433 58.2
C06p00600 Brassica napus HOM05D003910 ORTHO05D004622 2.9e-132 476.1 433 58.2
BolC6t35193H Brassica oleracea HOM05D003910 ORTHO05D004622 2.9e-132 476.1 433 58.2
BraSC36t46049Z Brassica rapa HOM05D003910 ORTHO05D004622 9.2e-131 471.1 333 70.9
A10p07550 Brassica napus HOM05D003910 ORTHO05D004622 2.1e-130 469.9 333 70.6
PSO782G2793 Papaver somniferum HOM05D003910 ORTHO05D004622 1.1e-128 464.2 317 77.0
TPR.G35178 Trifolium pratense HOM05D003910 ORTHO05D004622 2.5e-128 463.0 444 60.8
Cre02.g091050 Chlamydomonas reinhardtii HOM05D003910 ORTHO05D004622 1.2e-119 434.1 345 60.9
MCO01G126 Micromonas commoda HOM05D003910 ORTHO05D004622 5.2e-118 428.7 339 61.7
SGA_v2.0_scaffold24G10456 Striga asiatica HOM05D003910 ORTHO05D004622 5.4e-115 418.7 323 70.6
PRCOL_00003407 Prasinoderma coloniale HOM05D003910 ORTHO05D004622 9.2e-115 417.9 312 66.7
Aa31LG6G9390 Aethionema arabicum HOM05D003910 ORTHO05D004622 1.1e-110 404.4 280 71.4
Atru.chr12.1381 Acer truncatum HOM05D003910 ORTHO05D004622 1.9e-107 393.7 211 91.0
Psat4g053280 Pisum sativum HOM05D003910 ORTHO05D004622 2.3e-89 333.6 221 78.7
Actinidia03462 Actinidia chinensis HOM05D003910 ORTHO05D004622 6.5e-76 288.9 193 75.6
Aa31sc95G130 Aethionema arabicum HOM05D003910 ORTHO05D004622 5.5e-75 285.8 234 65.0
CBR_g49534 Chara braunii HOM05D003910 ORTHO05D000048 3.0e-65 253.4 201 62.7
Nn3g17592 Nelumbo nucifera HOM05D003910 ORTHO05D004622 2.8e-63 246.9 287 50.5
Haze_27031 Corylus avellana HOM05D003910 ORTHO05D004622 8.2e-63 245.4 276 49.6
arahy.Tifrunner.gnm1.ann1.875P1G Arachis hypogaea HOM05D003910 ORTHO05D004622 3.5e-61 240.0 183 66.1
arahy.Tifrunner.gnm1.ann1.YZW1CW Arachis hypogaea HOM05D003910 ORTHO05D004622 2.7e-58 230.3 183 63.9
Psat0s476g0040 Pisum sativum HOM05D003910 ORTHO05D004622 2.3e-57 227.3 140 75.7
arahy.Tifrunner.gnm1.ann1.I497ZX Arachis hypogaea HOM05D003910 ORTHO05D004622 1.9e-51 207.6 179 59.8
Cfa022049 Carpinus fangiana HOM05D003910 ORTHO05D004622 5.5e-51 206.1 311 39.9
arahy.Tifrunner.gnm1.ann1.FDSF2K Arachis hypogaea HOM05D003910 ORTHO05D004622 1.5e-48 198.0 172 66.9
arahy.Tifrunner.gnm1.ann1.MAXD3F Arachis hypogaea HOM05D003910 ORTHO05D004622 4.4e-48 196.4 177 57.1
Aa31sc107G70 Aethionema arabicum HOM05D003910 ORTHO05D004622 5.9e-45 186.0 148 66.2
BcaB06g27098 Brassica carinata HOM05D003910 ORTHO05D004622 1.3e-44 184.9 101 84.2
arahy.Tifrunner.gnm1.ann1.KLV74S Arachis hypogaea HOM05D003910 ORTHO05D004622 7.2e-43 179.1 179 55.3
Psat4g053240 Pisum sativum HOM05D003910 ORTHO05D004622 9.4e-43 178.7 104 83.7
BcaB05g22163 Brassica carinata HOM05D003910 ORTHO05D004622 1.2e-42 178.3 101 81.2
Nn4g23594 Nelumbo nucifera HOM05D003910 ORTHO05D004622 1.6e-42 177.9 100 88.0
BcaB04g19319 Brassica carinata HOM05D003910 ORTHO05D004622 4.9e-39 166.4 100 78.0
Oeu059446.1 Olea europaea HOM05D003910 ORTHO05D004622 1.0e-36 158.7 77 93.5
TPR.G20499 Trifolium pratense HOM05D003910 ORTHO05D004622 2.5e-35 154.1 122 67.2
Haze_27000 Corylus avellana HOM05D003910 ORTHO05D004622 4.2e-35 153.3 212 40.1
TAR622G0657 Trochodendron aralioides HOM05D003910 ORTHO05D004622 3.0e-33 147.1 134 61.9
SpUn0247_0040 Schrenkiella parvula HOM05D003910 ORTHO05D004622 2.0e-32 144.4 76 84.2
Actinidia03463 Actinidia chinensis HOM05D003910 ORTHO05D004622 2.1e-26 124.4 72 87.5
TAR371G0308 Trochodendron aralioides HOM05D003910 ORTHO05D004622 1.7e-23 114.8 74 78.4
Lsat_1_v5_gn_8_139480 Lactuca sativa HOM05D003910 ORTHO05D004420 2.3e-20 104.4 106 54.7
arahy.Tifrunner.gnm1.ann1.ZWJ939 Arachis hypogaea HOM05D000074 ORTHO05D004622 3.0e-20 104.0 182 38.5
Psat1g078960 Pisum sativum HOM05D003910 ORTHO05D004622 4.0e-17 93.6 78 67.9
Psat1g079000 Pisum sativum HOM05D003910 ORTHO05D004622 4.0e-17 93.6 78 67.9
Aa31sc107G60 Aethionema arabicum HOM05D003910 ORTHO05D059684 7.1e-14 82.8 49 83.7
SEGI_40510 Sequoiadendron giganteum HOM05D003910 ORTHO05D004622 5.1e-12 76.6 50 72.0
Nn3g17591 Nelumbo nucifera HOM05D003910 ORTHO05D004622 1.8e-09 68.2 36 91.7
Lsat_1_v5_gn_8_143861 Lactuca sativa HOM05D003910 ORTHO05D004622 3.4e-08 63.9 45 71.1
Sp6g37550 Schrenkiella parvula HOM05D003910 ORTHO05D004622 5.8e-08 63.2 89 37.1
ECA233G3734 Erigeron canadensis HOM05D005443 ORTHO05D009021 2.2e-07 61.2 105 48.6
arahy.Tifrunner.gnm1.ann1.LHV34C Arachis hypogaea HOM05D003910 ORTHO05D004622 8.4e-07 59.3 65 49.2


User provided reference genes

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