Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim05G0147200 Rhododendron simsii HOM05D009565 ORTHO05D037459 2.2e-213 745.3 380 100.0
Rhsim09G0047500 Rhododendron simsii HOM05D000107 ORTHO05D000062 2.5e-140 502.7 311 84.2
Rhsim09G0047300 Rhododendron simsii HOM05D000107 ORTHO05D000062 3.5e-126 455.7 297 80.5
RhsimUnG0181200 Rhododendron simsii HOM05D000107 ORTHO05D000062 1.0e-88 331.3 225 78.2
Rhsim02G0107900 Rhododendron simsii HOM05D009565 ORTHO05D037459 4.7e-70 269.2 149 94.6
Rhsim06G0076200 Rhododendron simsii HOM05D000107 ORTHO05D009882 1.2e-17 95.1 240 31.7
QL05p006610 Quercus lobata HOM05D007798 ORTHO05D009882 1.9e-15 87.8 247 27.5
Rhsim05G0032900 Rhododendron simsii HOM05D000107 ORTHO05D000062 2.5e-15 87.4 284 28.5
Rhsim09G0079100 Rhododendron simsii HOM05D009565 ORTHO05D012252 2.5e-15 87.4 154 39.0
Rhsim02G0157700 Rhododendron simsii HOM05D000107 ORTHO05D000062 4.3e-15 86.7 276 28.3
Rhsim04G0111400 Rhododendron simsii HOM05D009565 ORTHO05D012252 4.3e-15 86.7 171 37.4
RhsimUnG0063700 Rhododendron simsii HOM05D000107 ORTHO05D000062 4.3e-15 86.7 284 28.9
Hma1.2p1_0371F.1_g138090 Hydrangea macrophylla HOM05D000107 ORTHO05D000062 5.6e-15 86.3 83 53.0
Rhsim12G0114600 Rhododendron simsii HOM05D009565 ORTHO05D012252 7.4e-15 85.9 174 38.5
Rhsim08G0138300 Rhododendron simsii HOM05D000107 ORTHO05D000062 2.1e-14 84.3 136 36.8
SHI47370 Sapria himalayana HOM05D000107 ORTHO05D000062 2.8e-14 84.0 136 39.0
QL12p013571 Quercus lobata HOM05D000107 ORTHO05D000062 4.8e-14 83.2 115 39.1
Rhsim08G0062000 Rhododendron simsii HOM05D009565 ORTHO05D012252 4.8e-14 83.2 170 38.2
FvH4_6g23073 Fragaria vesca HOM05D000107 ORTHO05D000062 6.2e-14 82.8 133 39.8
PSO210G5494 Papaver somniferum HOM05D000107 ORTHO05D000062 1.1e-13 82.0 83 48.2
Migut.E01700 Erythranthe guttata HOM05D000107 ORTHO05D000062 1.4e-13 81.6 138 37.0
Rhsim03G0038000 Rhododendron simsii HOM05D009565 ORTHO05D012252 1.4e-13 81.6 149 38.9
TWI31G1349 Tripterygium wilfordii HOM05D000107 ORTHO05D000062 1.4e-13 81.6 143 35.0
Hma1.2p1_1173F.1_g263710 Hydrangea macrophylla HOM05D000107 ORTHO05D000062 2.4e-13 80.9 109 39.4
Rhsim06G0120600 Rhododendron simsii HOM05D000107 ORTHO05D000062 2.4e-13 80.9 288 26.4
Aqoxy4G00524 Aquilegia oxysepala HOM05D000107 ORTHO05D000062 5.3e-13 79.7 67 52.2
Rhsim10G0126600 Rhododendron simsii HOM05D009565 ORTHO05D012252 5.3e-13 79.7 157 40.8
PSO210G7759 Papaver somniferum HOM05D000107 ORTHO05D000062 6.9e-13 79.3 83 47.0
RcHm_v2.0_Chr4g0403821 Rosa chinensis HOM05D000107 ORTHO05D000062 6.9e-13 79.3 147 32.7
RcHm_v2.0_Chr2g0106121 Rosa chinensis HOM05D000107 ORTHO05D000062 9.0e-13 79.0 130 36.2
Atru.chr6.2082 Acer truncatum HOM05D000107 ORTHO05D000062 1.5e-12 78.2 130 34.6
CSS0013519 Camellia sinensis var. sinensis HOM05D000107 ORTHO05D000062 1.5e-12 78.2 121 36.4
CSS0012009 Camellia sinensis var. sinensis HOM05D000107 ORTHO05D000062 2.0e-12 77.8 130 33.8
CSS0050072 Camellia sinensis var. sinensis HOM05D000107 ORTHO05D000062 3.4e-12 77.0 121 35.5
Atru.chr11.112 Acer truncatum HOM05D000107 ORTHO05D000062 4.5e-12 76.6 162 30.9
Atru.chr6.422 Acer truncatum HOM05D000107 ORTHO05D000062 5.8e-12 76.3 142 33.1
CSS0003957 Camellia sinensis var. sinensis HOM05D000107 ORTHO05D000062 1.0e-11 75.5 121 35.5
CSS0007220 Camellia sinensis var. sinensis HOM05D000107 ORTHO05D000062 1.0e-11 75.5 121 35.5
CSS0048865 Camellia sinensis var. sinensis HOM05D000107 ORTHO05D000062 1.0e-11 75.5 121 35.5
CiPaw.11G164700 Carya illinoinensis HOM05D000107 ORTHO05D000062 1.0e-11 75.5 76 48.7
CSS0049745 Camellia sinensis var. sinensis HOM05D000107 ORTHO05D000062 1.3e-11 75.1 121 34.7
MBI09_g30142_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D011056 1.3e-11 75.1 148 35.8
CSS0009121 Camellia sinensis var. sinensis HOM05D000107 ORTHO05D000062 1.7e-11 74.7 121 35.5
CSS0022398 Camellia sinensis var. sinensis HOM05D000107 ORTHO05D000062 1.7e-11 74.7 133 33.8
PSO675G6961 Papaver somniferum HOM05D000107 ORTHO05D000062 1.7e-11 74.7 140 35.0
Rhsim12G0098300 Rhododendron simsii HOM05D061456 ORTHO05D339227 2.2e-11 74.3 160 39.4
PSO384G2882 Papaver somniferum HOM05D000107 ORTHO05D000062 2.9e-11 73.9 134 37.3
Rhsim06G0126900 Rhododendron simsii HOM05D000107 ORTHO05D000062 2.9e-11 73.9 133 33.8
Actinidia07747 Actinidia chinensis HOM05D000107 ORTHO05D000062 3.8e-11 73.6 135 35.6
FvH4_4g15893 Fragaria vesca HOM05D000107 ORTHO05D000062 3.8e-11 73.6 108 38.0
Rhsim01G0162500 Rhododendron simsii HOM05D000107 ORTHO05D000062 4.9e-11 73.2 215 25.6
PSO017G6416 Papaver somniferum HOM05D000107 ORTHO05D000062 6.5e-11 72.8 114 35.1
PSO063G0443 Papaver somniferum HOM05D000107 ORTHO05D000062 6.5e-11 72.8 131 36.6
PSO675G5616 Papaver somniferum HOM05D000107 ORTHO05D000062 6.5e-11 72.8 114 35.1
Rhsim02G0157900 Rhododendron simsii HOM05D000107 ORTHO05D000062 6.5e-11 72.8 138 34.8
Rhsim03G0061000 Rhododendron simsii HOM05D000107 ORTHO05D000062 6.5e-11 72.8 89 41.6
MBI08_g33343_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D000669 8.4e-11 72.4 147 36.7
PSO210G6025 Papaver somniferum HOM05D000107 ORTHO05D000062 8.4e-11 72.4 118 35.6
PSO675G0591 Papaver somniferum HOM05D000107 ORTHO05D000062 8.4e-11 72.4 114 35.1
PSO384G4887 Papaver somniferum HOM05D000107 ORTHO05D000062 1.1e-10 72.0 104 35.6
Rhsim05G0124400 Rhododendron simsii HOM05D000107 ORTHO05D000062 1.1e-10 72.0 131 35.1
Rhsim11G0024300 Rhododendron simsii HOM05D000107 ORTHO05D000062 1.1e-10 72.0 131 35.1
Atru.chr2.704 Acer truncatum HOM05D000107 ORTHO05D000062 1.4e-10 71.6 57 54.4
Rhsim11G0005900 Rhododendron simsii HOM05D000107 ORTHO05D000062 1.4e-10 71.6 133 33.8
CSS0047068 Camellia sinensis var. sinensis HOM05D000107 ORTHO05D000062 1.9e-10 71.2 137 30.7
PSO675G5010 Papaver somniferum HOM05D000107 ORTHO05D000062 1.9e-10 71.2 114 35.1
CSS0024740 Camellia sinensis var. sinensis HOM05D000107 ORTHO05D000062 3.2e-10 70.5 137 31.4
CSS0032482 Camellia sinensis var. sinensis HOM05D000107 ORTHO05D000062 3.2e-10 70.5 137 31.4
Rhsim01G0051300 Rhododendron simsii HOM05D000107 ORTHO05D000062 3.2e-10 70.5 129 34.1
Rhsim11G0023200 Rhododendron simsii HOM05D000107 ORTHO05D000062 3.2e-10 70.5 131 34.4
CSS0014387 Camellia sinensis var. sinensis HOM05D000107 ORTHO05D000062 4.2e-10 70.1 137 31.4
PSO339G6582 Papaver somniferum HOM05D000107 ORTHO05D000062 4.2e-10 70.1 133 36.8
PSO541G2440 Papaver somniferum HOM05D000107 ORTHO05D000062 5.5e-10 69.7 118 36.4
CSS0003322 Camellia sinensis var. sinensis HOM05D000107 ORTHO05D000062 7.1e-10 69.3 137 31.4
CSS0012803 Camellia sinensis var. sinensis HOM05D000107 ORTHO05D000062 7.1e-10 69.3 137 31.4
CSS0048301 Camellia sinensis var. sinensis HOM05D000107 ORTHO05D000062 7.1e-10 69.3 137 31.4
Rhsim10G0126500 Rhododendron simsii HOM05D000107 ORTHO05D000062 7.1e-10 69.3 128 32.8
vmacro14370 Vaccinium macrocarpon HOM05D009565 ORTHO05D037459 7.1e-10 69.3 45 75.6
PSO541G0392 Papaver somniferum HOM05D000107 ORTHO05D000062 9.3e-10 68.9 118 34.7
Rhsim09G0074400 Rhododendron simsii HOM05D000107 ORTHO05D000062 9.3e-10 68.9 121 40.5
SGA_v2.0_scaffold271G46327 Striga asiatica HOM05D000107 ORTHO05D000062 9.3e-10 68.9 139 33.1
Atru.chr4.921 Acer truncatum HOM05D000107 ORTHO05D000062 2.1e-09 67.8 156 34.0
Rhsim01G0162400 Rhododendron simsii HOM05D000107 ORTHO05D000062 2.1e-09 67.8 262 23.7
Rhsim03G0202400 Rhododendron simsii HOM05D000107 ORTHO05D000062 2.1e-09 67.8 142 33.1
FvH4_7g15281 Fragaria vesca HOM05D007789 ORTHO05D008963 2.7e-09 67.4 103 32.0
Rhsim07G0158800 Rhododendron simsii HOM05D000107 ORTHO05D000062 2.7e-09 67.4 110 36.4
CSS0020194 Camellia sinensis var. sinensis HOM05D000107 ORTHO05D000062 3.5e-09 67.0 133 33.1
CiPaw.07G108900 Carya illinoinensis HOM05D000107 ORTHO05D000062 3.5e-09 67.0 116 35.3
MELO3C010327.2 Cucumis melo HOM05D000107 ORTHO05D000062 3.5e-09 67.0 151 31.1
Rhsim09G0073600 Rhododendron simsii HOM05D000107 ORTHO05D000062 3.5e-09 67.0 133 29.3
CANSAT11G1880 Cannabis sativa HOM05D000107 ORTHO05D000062 4.6e-09 66.6 62 41.9
CAN.G760.10 Capsicum annuum HOM05D000107 ORTHO05D000062 4.6e-09 66.6 146 30.1
Rhsim06G0127000 Rhododendron simsii HOM05D009565 ORTHO05D012252 4.6e-09 66.6 176 35.8
Rhsim11G0006000 Rhododendron simsii HOM05D009565 ORTHO05D012252 4.6e-09 66.6 170 36.5
RhsimUnG0074200 Rhododendron simsii HOM05D000107 ORTHO05D000062 6.0e-09 66.2 85 37.6
FvH4_5g35083 Fragaria vesca HOM05D008794 ORTHO05D013083 7.9e-09 65.9 52 48.1
PSO210G1515 Papaver somniferum HOM05D000107 ORTHO05D000062 7.9e-09 65.9 144 29.9
CANSAT25G3231 Cannabis sativa HOM05D000107 ORTHO05D000062 1.0e-08 65.5 62 45.2
FvH4_6g17652 Fragaria vesca HOM05D000107 ORTHO05D008963 1.0e-08 65.5 53 49.1
FvH4_6g34821 Fragaria vesca HOM05D000107 ORTHO05D000062 1.0e-08 65.5 91 35.2
CANSAT21G2134 Cannabis sativa HOM05D000107 ORTHO05D000062 1.3e-08 65.1 61 44.3
MELO3C028826.2 Cucumis melo HOM05D001963 ORTHO05D001863 1.3e-08 65.1 81 40.7
FvH4_3g31280 Fragaria vesca HOM05D007789 ORTHO05D008963 1.3e-08 65.1 102 33.3
MBI19_g14755_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D011056 1.3e-08 65.1 52 57.7
Rhsim04G0237300 Rhododendron simsii HOM05D000107 ORTHO05D000062 1.3e-08 65.1 215 25.1
RhsimUnG0041600 Rhododendron simsii HOM05D000107 ORTHO05D000062 1.3e-08 65.1 77 40.3
CANSAT21G1356 Cannabis sativa HOM05D000107 ORTHO05D000062 1.8e-08 64.7 62 43.5
ECA234G2615 Erigeron canadensis HOM05D000107 ORTHO05D000062 1.8e-08 64.7 55 49.1
FAN20G3144 Fragaria x ananassa HOM05D007789 ORTHO05D008963 1.8e-08 64.7 95 34.7
Rhsim01G0136300 Rhododendron simsii HOM05D004909 ORTHO05D009316 1.8e-08 64.7 131 39.7
MBI14_g47774_MAGBIO Magnolia biondii HOM05D000107 ORTHO05D011056 2.3e-08 64.3 109 37.6
Rhsim08G0110800 Rhododendron simsii HOM05D009565 ORTHO05D012252 2.3e-08 64.3 129 37.2
CANSAT64G0850 Cannabis sativa HOM05D000107 ORTHO05D000062 3.0e-08 63.9 66 36.4
ECA233G0961 Erigeron canadensis HOM05D000107 ORTHO05D000062 3.0e-08 63.9 137 29.2
Rhsim09G0060300 Rhododendron simsii HOM05D000107 ORTHO05D000062 3.9e-08 63.5 214 24.8
ECA246G4041 Erigeron canadensis HOM05D000107 ORTHO05D000062 5.1e-08 63.2 137 30.7
Rhsim11G0004800 Rhododendron simsii HOM05D000107 ORTHO05D000062 5.1e-08 63.2 112 33.0
TWI34G0033 Tripterygium wilfordii HOM05D000107 ORTHO05D000062 5.1e-08 63.2 141 34.0
CANSAT11G0404 Cannabis sativa HOM05D000107 ORTHO05D000062 6.7e-08 62.8 69 36.2
Rhsim07G0152200 Rhododendron simsii HOM05D000107 ORTHO05D000062 6.7e-08 62.8 147 32.0
Solyc11g032040.3 Solanum lycopersicum HOM05D000107 ORTHO05D000062 6.7e-08 62.8 63 49.2
CSS0045611 Camellia sinensis var. sinensis HOM05D000107 ORTHO05D000062 8.7e-08 62.4 136 32.4
MBI10_g41876_MAGBIO Magnolia biondii HOM05D000107 ORTHO05D011056 8.7e-08 62.4 64 43.8
CANSAT80G2014 Cannabis sativa HOM05D000107 ORTHO05D000062 1.1e-07 62.0 65 41.5
ECA232G3963 Erigeron canadensis HOM05D000107 ORTHO05D000062 1.1e-07 62.0 136 31.6
ECA238G3175 Erigeron canadensis HOM05D000107 ORTHO05D000062 1.1e-07 62.0 73 39.7
ECA246G0108 Erigeron canadensis HOM05D000107 ORTHO05D000062 1.5e-07 61.6 120 33.3
PSO675G7714 Papaver somniferum HOM05D000107 ORTHO05D000062 1.9e-07 61.2 103 33.0
TWI73G1301 Tripterygium wilfordii HOM05D000107 ORTHO05D000062 1.9e-07 61.2 59 50.8
CANSAT56G2137 Cannabis sativa HOM05D000107 ORTHO05D000062 2.5e-07 60.8 128 29.7
CSS0020545 Camellia sinensis var. sinensis HOM05D000107 ORTHO05D000062 3.3e-07 60.5 140 28.6
CANSAT01G1130 Cannabis sativa HOM05D000107 ORTHO05D000062 3.3e-07 60.5 147 29.3
ECA234G3876 Erigeron canadensis HOM05D000107 ORTHO05D000062 3.3e-07 60.5 145 29.0
PSO017G6189 Papaver somniferum HOM05D000107 ORTHO05D000062 5.7e-07 59.7 154 29.2
Rhsim08G0138200 Rhododendron simsii HOM05D061456 ORTHO05D338598 5.7e-07 59.7 159 38.4
CAN.G897.7 Capsicum annuum HOM05D030169 ORTHO05D022162 7.4e-07 59.3 199 28.1
CANSAT01G1656 Cannabis sativa HOM05D000107 ORTHO05D000062 9.6e-07 58.9 111 28.8
MELO3C030566.2 Cucumis melo HOM05D001963 ORTHO05D001863 9.6e-07 58.9 97 36.1
MBI16_g40943_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D011056 9.6e-07 58.9 145 29.7
Rhsim07G0151700 Rhododendron simsii HOM05D009565 ORTHO05D012252 1.3e-06 58.5 105 39.0
CSS0012968 Camellia sinensis var. sinensis HOM05D000107 ORTHO05D000062 2.1e-06 57.8 82 36.6
CANSAT35G0031 Cannabis sativa HOM05D000107 ORTHO05D000062 2.1e-06 57.8 143 27.3
CANSAT56G4443 Cannabis sativa HOM05D000107 ORTHO05D000062 2.1e-06 57.8 147 27.9
Rhsim10G0213900 Rhododendron simsii HOM05D000107 ORTHO05D000062 2.1e-06 57.8 121 30.6
SHI42631 Sapria himalayana HOM05D000107 ORTHO05D000062 2.1e-06 57.8 139 32.4
CSS0027655 Camellia sinensis var. sinensis HOM05D000107 ORTHO05D000062 2.8e-06 57.4 136 28.7
CAN.G412.5 Capsicum annuum HOM05D011106 ORTHO05D010952 2.8e-06 57.4 146 33.6
PSO782G5139 Papaver somniferum HOM05D000107 ORTHO05D000062 2.8e-06 57.4 67 37.3
SGA_v2.0_scaffold6G03311 Striga asiatica HOM05D000107 ORTHO05D000062 2.8e-06 57.4 41 56.1
Rhsim01G0128800 Rhododendron simsii HOM05D000107 ORTHO05D000062 3.7e-06 57.0 153 28.8
CANSAT78G1492 Cannabis sativa HOM05D000107 ORTHO05D000062 4.8e-06 56.6 116 33.6
SHI45316 Sapria himalayana HOM05D000107 ORTHO05D000062 4.8e-06 56.6 82 39.0
CANSAT64G1084 Cannabis sativa HOM05D000107 ORTHO05D000062 6.2e-06 56.2 147 25.2
AUR62040758 Chenopodium quinoa HOM05D006468 ORTHO05D006908 6.2e-06 56.2 60 46.7
PSO063G5761 Papaver somniferum HOM05D000107 ORTHO05D000062 6.2e-06 56.2 63 41.3
PSO210G2390 Papaver somniferum HOM05D000107 ORTHO05D000062 6.2e-06 56.2 63 41.3
PSO210G4818 Papaver somniferum HOM05D000107 ORTHO05D000062 6.2e-06 56.2 63 41.3
PSO210G4883 Papaver somniferum HOM05D000107 ORTHO05D000062 6.2e-06 56.2 63 41.3
PSO210G6071 Papaver somniferum HOM05D000107 ORTHO05D000062 6.2e-06 56.2 63 41.3
PSO210G6963 Papaver somniferum HOM05D000107 ORTHO05D000062 6.2e-06 56.2 63 41.3
PSO461G0010 Papaver somniferum HOM05D000107 ORTHO05D000062 6.2e-06 56.2 63 41.3
PSO541G0711 Papaver somniferum HOM05D000107 ORTHO05D000062 6.2e-06 56.2 63 41.3
PSO566G0081 Papaver somniferum HOM05D000107 ORTHO05D000062 6.2e-06 56.2 63 41.3
PSO675G6583 Papaver somniferum HOM05D000107 ORTHO05D000062 6.2e-06 56.2 63 41.3
EL10Ac9g22369 Beta vulgaris HOM05D000107 ORTHO05D000062 8.2e-06 55.8 77 36.4


User provided reference genes

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