Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim05G0145900 Rhododendron simsii HOM05D002099 ORTHO05D002080 9.4e-223 776.5 396 100.0
Dinv29097 Davidia involucrata HOM05D002099 ORTHO05D002080 1.4e-37 161.4 200 51.0
CSS0048982 Camellia sinensis var. sinensis HOM05D002099 ORTHO05D002080 6.7e-35 152.5 153 55.6
Oeu046894.1 Olea europaea HOM05D002099 ORTHO05D002080 1.6e-33 147.9 186 50.0
vmacro19652 Vaccinium macrocarpon HOM05D002099 ORTHO05D002080 1.6e-33 147.9 111 72.1
Eucgr.H01389 Eucalyptus grandis HOM05D002099 ORTHO05D002080 2.1e-33 147.5 185 47.0
Lj3A637T23 Lonicera japonica HOM05D002099 ORTHO05D002080 6.2e-33 146.0 199 48.2
Cfa006262 Carpinus fangiana HOM05D000001 ORTHO05D000003 8.2e-33 145.6 196 46.4
PGR031G1225 Punica granatum HOM05D002099 ORTHO05D002080 1.4e-32 144.8 197 46.2
Lj1g0024785 Lotus japonicus HOM05D002099 ORTHO05D002080 1.8e-32 144.4 187 48.1
Ca_07988_v3 Cicer arietinum L. HOM05D002099 ORTHO05D002080 2.4e-32 144.1 196 45.4
Actinidia06808 Actinidia chinensis HOM05D002099 ORTHO05D002080 3.1e-32 143.7 177 46.9
Prupe.6G361500 Prunus persica HOM05D002099 ORTHO05D002080 3.1e-32 143.7 220 42.3
Haze_02117 Corylus avellana HOM05D002099 ORTHO05D002080 5.3e-32 142.9 196 45.4
TAR362G0096 Trochodendron aralioides HOM05D002099 ORTHO05D002080 5.3e-32 142.9 212 42.0
RcHm_v2.0_Chr3g0447871 Rosa chinensis HOM05D002099 ORTHO05D002080 9.0e-32 142.1 200 46.0
Potri.013G085850 Populus trichocarpa HOM05D002099 ORTHO05D002080 1.2e-31 141.7 185 46.5
CANSAT54G1934 Cannabis sativa HOM05D002099 ORTHO05D002080 4.5e-31 139.8 200 43.0
Cc09_g03650 Coffea canephora HOM05D002099 ORTHO05D002080 1.0e-30 138.7 204 45.6
Nn2g12612 Nelumbo nucifera HOM05D002099 ORTHO05D002080 1.0e-30 138.7 186 47.8
MD04G1244900 Malus domestica HOM05D002099 ORTHO05D002080 2.2e-30 137.5 196 44.4
PSO675G9338 Papaver somniferum HOM05D002099 ORTHO05D002080 3.8e-30 136.7 184 45.1
PSO017G0082 Papaver somniferum HOM05D002099 ORTHO05D002080 5.0e-30 136.3 184 45.1
Glyma.09G250400 Glycine max HOM05D002099 ORTHO05D002080 5.5e-29 132.9 196 43.9
Sabra13G0077900 Salix brachista HOM05D002099 ORTHO05D002080 1.2e-28 131.7 186 44.6
Glyma.18G242100 Glycine max HOM05D002099 ORTHO05D002080 1.6e-28 131.3 196 42.9
MBI11_g19463_MAGBIO Magnolia biondii HOM05D002099 ORTHO05D002080 2.7e-28 130.6 177 43.5
Phvul.008G054075 Phaseolus vulgaris HOM05D002099 ORTHO05D002080 6.1e-28 129.4 186 42.5
Manes.12G005700 Manihot esculenta HOM05D002099 ORTHO05D002080 1.0e-27 128.6 186 45.2
Peaxi162Scf00048g00816 Petunia axillaris HOM05D002099 ORTHO05D002080 1.0e-27 128.6 180 45.6
Lalb_Chr03g0038621 Lupinus albus HOM05D002099 ORTHO05D002080 1.3e-27 128.3 186 41.9
Gorai.012G028100 Gossypium raimondii HOM05D002099 ORTHO05D002080 1.8e-27 127.9 178 47.2
Gohir.A05G391800 Gossypium hirsutum HOM05D002099 ORTHO05D002080 2.3e-27 127.5 178 46.1
Gohir.D04G025500 Gossypium hirsutum HOM05D002099 ORTHO05D002080 3.0e-27 127.1 178 47.2
Nitab4.5_0001435g0060 Nicotiana tabacum HOM05D002099 ORTHO05D002080 3.0e-27 127.1 228 42.5
MBI11_g39359_MAGBIO Magnolia biondii HOM05D002099 ORTHO05D002080 3.9e-27 126.7 177 43.5
Medtr7g080030 Medicago truncatula HOM05D002099 ORTHO05D002080 3.9e-27 126.7 171 43.3
VMungo1383G2001 Vigna mungo HOM05D002099 ORTHO05D002080 3.9e-27 126.7 186 43.0
Psat3g138200 Pisum sativum HOM05D002099 ORTHO05D002080 8.7e-27 125.6 176 42.6
FAN09G2981 Fragaria x ananassa HOM05D002099 ORTHO05D002080 1.1e-26 125.2 191 43.5
TPR.G31800 Trifolium pratense HOM05D002099 ORTHO05D002080 1.5e-26 124.8 171 43.9
Thecc.05G199100 Theobroma cacao HOM05D002099 ORTHO05D002080 1.9e-26 124.4 201 43.3
FvH4_6g00490 Fragaria vesca HOM05D002099 ORTHO05D002080 2.5e-26 124.0 191 42.9
FAN05G4152 Fragaria x ananassa HOM05D002099 ORTHO05D002080 2.5e-26 124.0 203 42.4
FAN14G4226 Fragaria x ananassa HOM05D002099 ORTHO05D002080 2.5e-26 124.0 191 42.9
Aqoxy2G02749 Aquilegia oxysepala HOM05D002099 ORTHO05D002080 4.3e-26 123.2 186 41.9
Atru.chr12.2088 Acer truncatum HOM05D002099 ORTHO05D002080 1.6e-25 121.3 184 42.4
Ciclev10013740m.g Citrus clementina HOM05D002099 ORTHO05D002080 2.2e-25 120.9 185 42.2
CAN.G1191.11 Capsicum annuum HOM05D002099 ORTHO05D002080 2.8e-25 120.6 228 40.4
CAN.G1191.12 Capsicum annuum HOM05D002099 ORTHO05D002080 2.8e-25 120.6 228 40.4
arahy.Tifrunner.gnm1.ann1.U4C2R0 Arachis hypogaea HOM05D002099 ORTHO05D002080 2.6e-23 114.0 189 40.2
arahy.Tifrunner.gnm1.ann1.05THYH Arachis hypogaea HOM05D002099 ORTHO05D002080 3.4e-23 113.6 189 40.2
EL10Ac4g09964 Beta vulgaris HOM05D002099 ORTHO05D002080 4.5e-23 113.2 140 46.4
SHI13718 Sapria himalayana HOM05D002099 ORTHO05D002080 7.7e-23 112.5 186 39.2
TWI36G0914 Tripterygium wilfordii HOM05D002099 ORTHO05D002080 7.7e-23 112.5 199 42.7
Sopen04g025290 Solanum pennellii HOM05D002099 ORTHO05D002080 8.5e-22 109.0 175 41.1
AUR62000310 Chenopodium quinoa HOM05D002099 ORTHO05D002080 2.5e-21 107.5 140 43.6
PGSC0003DMG400007260 Solanum tuberosum HOM05D002099 ORTHO05D002080 2.5e-21 107.5 178 40.4
AUR62006654 Chenopodium quinoa HOM05D002099 ORTHO05D002080 4.2e-21 106.7 115 52.2
Solyc04g056380.3 Solanum lycopersicum HOM05D002099 ORTHO05D002080 3.6e-20 103.6 175 38.9
Ah.06g195480 Amaranthus hybridus HOM05D002099 ORTHO05D002080 1.0e-19 102.1 145 40.7
Hund07347 Selenicereus undatus HOM05D002099 ORTHO05D002080 5.1e-19 99.8 120 45.0
QL01p045495 Quercus lobata HOM05D002099 ORTHO05D002080 6.7e-19 99.4 224 35.7
CARHR196790 Cardamine hirsuta HOM05D002099 ORTHO05D002080 8.8e-19 99.0 202 33.7
DCAR_002121 Daucus carota HOM05D002099 ORTHO05D002080 1.1e-18 98.6 115 44.3
Thhalv10015351m.g Eutrema salsugineum HOM05D002099 ORTHO05D002080 2.0e-18 97.8 201 35.3
Lsat_1_v5_gn_9_49060 Lactuca sativa HOM05D002099 ORTHO05D002080 2.0e-18 97.8 189 36.5
Sc16g0010380 Simmondsia chinensis HOM05D002099 ORTHO05D002080 2.0e-18 97.8 133 41.4
A02p03540 Brassica napus HOM05D002099 ORTHO05D002080 2.5e-18 97.4 200 37.0
MELO3C010056.2 Cucumis melo HOM05D002099 ORTHO05D002080 4.3e-18 96.7 198 37.4
C02p08360 Brassica napus HOM05D002099 ORTHO05D002080 5.7e-18 96.3 201 36.3
Sp6g27720 Schrenkiella parvula HOM05D002099 ORTHO05D002080 5.7e-18 96.3 205 36.6
Aa31LG11G13200 Aethionema arabicum HOM05D002099 ORTHO05D002080 9.7e-18 95.5 201 35.8
BraA02t05325Z Brassica rapa HOM05D002099 ORTHO05D002080 9.7e-18 95.5 200 36.5
Carub.0006s1466 Capsella rubella HOM05D002099 ORTHO05D002080 1.3e-17 95.1 202 32.2
AL6G27400 Arabidopsis lyrata HOM05D002099 ORTHO05D002080 2.2e-17 94.4 202 32.2
BolC2t06753H Brassica oleracea HOM05D002099 ORTHO05D002080 2.2e-17 94.4 201 35.8
THA.LOC104827173 Tarenaya hassleriana HOM05D002099 ORTHO05D002080 2.8e-17 94.0 124 43.5
ClCG03G010670 Citrullus lanatus HOM05D002099 ORTHO05D002080 3.7e-17 93.6 173 35.8
AT5G16460 Arabidopsis thaliana HOM05D002099 ORTHO05D002080 6.3e-17 92.8 202 32.7
BcaB01g04981 Brassica carinata HOM05D002099 ORTHO05D002080 1.1e-16 92.0 201 33.3
A03p07790 Brassica napus HOM05D002099 ORTHO05D002080 1.1e-16 92.0 201 32.8
BolC3t13397H Brassica oleracea HOM05D002099 ORTHO05D002080 1.1e-16 92.0 201 33.3
BraA03t10106Z Brassica rapa HOM05D002099 ORTHO05D002080 1.1e-16 92.0 201 32.8
SEGI_09886 Sequoiadendron giganteum HOM05D002099 ORTHO05D002080 1.8e-16 91.3 189 30.7
C03p09010 Brassica napus HOM05D002099 ORTHO05D002080 3.1e-16 90.5 201 31.8
SGA_v2.0_scaffold62G21503 Striga asiatica HOM05D002099 ORTHO05D002080 9.1e-16 89.0 200 32.0
Nitab4.5_0000083g0130 Nicotiana tabacum HOM05D002099 ORTHO05D002080 1.2e-15 88.6 101 50.5
ECA232G1944 Erigeron canadensis HOM05D002099 ORTHO05D002080 1.5e-15 88.2 119 44.5
HanXRQChr05g0141781 Helianthus annuus HOM05D002099 ORTHO05D002080 1.5e-15 88.2 116 40.5
SalBow1G1769 Salvia bowleyana HOM05D002099 ORTHO05D002080 2.6e-15 87.4 116 42.2
Migut.F02134 Erythranthe guttata HOM05D002099 ORTHO05D002080 1.0e-14 85.5 91 51.6
DCAR_031610 Daucus carota HOM05D002099 ORTHO05D002080 2.9e-14 84.0 115 45.2
Cpa.g.sc39.11 Carica papaya HOM05D002099 ORTHO05D002080 5.0e-14 83.2 127 44.1
Sed0005400 Sechium edule HOM05D002099 ORTHO05D002080 8.5e-14 82.4 183 37.2
CsaV3_1G044520 Cucumis sativus L. HOM05D000081 ORTHO05D000036 3.2e-13 80.5 190 36.8
Mapoly0115s0029 Marchantia polymorpha HOM05D002099 ORTHO05D002080 6.7e-11 72.8 192 32.3
unitig_749.g14053 Utricularia gibba HOM05D002099 ORTHO05D002080 7.4e-10 69.3 118 36.4
Pp3c3_38050 Physcomitrium patens HOM05D002099 ORTHO05D002080 1.7e-09 68.2 138 31.9
Cc02_g15900 Coffea canephora HOM05D002099 ORTHO05D002080 2.2e-09 67.8 124 34.7
ATR0165G010 Amborella trichopoda HOM05D002099 ORTHO05D002080 4.8e-09 66.6 146 34.9
Actinidia39530 Actinidia chinensis HOM05D002099 ORTHO05D002080 2.4e-08 64.3 122 35.2
Solyc02g071900.3 Solanum lycopersicum HOM05D002099 ORTHO05D002080 2.4e-08 64.3 123 32.5
Sopen02g020890 Solanum pennellii HOM05D002099 ORTHO05D002080 2.4e-08 64.3 123 32.5
vmacro10941 Vaccinium macrocarpon HOM05D002099 ORTHO05D002080 2.4e-08 64.3 196 28.6
PGSC0003DMG400028410 Solanum tuberosum HOM05D002099 ORTHO05D002080 3.1e-08 63.9 123 32.5
TWI53G0885 Tripterygium wilfordii HOM05D002099 ORTHO05D002080 3.1e-08 63.9 124 35.5
Nitab4.5_0008572g0030 Nicotiana tabacum HOM05D004109 ORTHO05D005867 4.1e-08 63.5 125 35.2
Os12g0148700 Oryza sativa ssp. japonica HOM05D002099 ORTHO05D002080 4.1e-08 63.5 125 30.4
CAN.G411.28 Capsicum annuum HOM05D002099 ORTHO05D002080 5.3e-08 63.2 128 32.0
SMO367G0850 Selaginella moellendorffii HOM05D002099 ORTHO05D002080 5.3e-08 63.2 122 33.6
Nitab4.5_0001778g0180 Nicotiana tabacum HOM05D002099 ORTHO05D002080 7.0e-08 62.8 125 34.4
MBI06_g16566_MAGBIO Magnolia biondii HOM05D002099 ORTHO05D002080 9.1e-08 62.4 123 32.5
Rhsim02G0137700 Rhododendron simsii HOM05D002099 ORTHO05D002080 1.5e-07 61.6 122 33.6
CSS0006478 Camellia sinensis var. sinensis HOM05D002099 ORTHO05D002080 2.6e-07 60.8 122 32.0
Actinidia07658 Actinidia chinensis HOM05D002099 ORTHO05D002080 3.5e-07 60.5 120 33.3
Potri.011G072200 Populus trichocarpa HOM05D002099 ORTHO05D002080 3.5e-07 60.5 122 31.1
Sabra11G0056600 Salix brachista HOM05D002099 ORTHO05D002080 3.5e-07 60.5 124 29.8
Sabra11G0060000 Salix brachista HOM05D002099 ORTHO05D002080 3.5e-07 60.5 124 29.8
ATR0048G072 Amborella trichopoda HOM05D061989 ORTHO05D002080 4.5e-07 60.1 111 33.3
TAR629G0376 Trochodendron aralioides HOM05D002099 ORTHO05D002080 4.5e-07 60.1 130 30.0
Atru.chr10.1518 Acer truncatum HOM05D002099 ORTHO05D002080 5.9e-07 59.7 124 29.0
Eucgr.D00420 Eucalyptus grandis HOM05D002099 ORTHO05D002080 5.9e-07 59.7 127 29.9
THA.LOC104820633 Tarenaya hassleriana HOM05D002099 ORTHO05D002080 5.9e-07 59.7 205 28.8
ECA236G4752 Erigeron canadensis HOM05D002099 ORTHO05D002080 7.7e-07 59.3 118 36.4
Os09g0534000 Oryza sativa ssp. japonica HOM05D002099 ORTHO05D002080 7.7e-07 59.3 187 27.8
Peaxi162Scf00112g01717 Petunia axillaris HOM05D002099 ORTHO05D002080 7.7e-07 59.3 123 33.3
Peaxi162Scf00854g00214 Petunia axillaris HOM05D002099 ORTHO05D002080 7.7e-07 59.3 116 31.0
TAR626G1033 Trochodendron aralioides HOM05D002099 ORTHO05D002080 7.7e-07 59.3 125 29.6
DCAR_003969 Daucus carota HOM05D002099 ORTHO05D002080 1.3e-06 58.5 126 34.1
Dinv32323 Davidia involucrata HOM05D002099 ORTHO05D002080 1.3e-06 58.5 124 30.6
Ciclev10014980m.g Citrus clementina HOM05D002099 ORTHO05D002080 1.7e-06 58.2 238 24.8
Duzib160G0890 Durio zibethinus HOM05D002099 ORTHO05D002080 1.7e-06 58.2 126 31.7
Aqoxy1G01946 Aquilegia oxysepala HOM05D002099 ORTHO05D002080 2.2e-06 57.8 124 29.0
Lj1A826G60 Lonicera japonica HOM05D002099 ORTHO05D002080 2.9e-06 57.4 119 30.3
Medtr2g017670 Medicago truncatula HOM05D002099 ORTHO05D002080 2.9e-06 57.4 128 29.7
Oeu033707.1 Olea europaea HOM05D002099 ORTHO05D002080 3.8e-06 57.0 134 31.3
TPR.G4518 Trifolium pratense HOM05D002099 ORTHO05D002080 3.8e-06 57.0 125 30.4
Pp3c8_820 Physcomitrium patens HOM05D002099 ORTHO05D002080 5.0e-06 56.6 186 28.0
Aa31LG6G5860 Aethionema arabicum HOM05D002099 ORTHO05D002080 6.5e-06 56.2 124 30.6
Glyma.05G162700 Glycine max HOM05D002099 ORTHO05D002080 6.5e-06 56.2 241 26.6
SalBow7G4550 Salvia bowleyana HOM05D002099 ORTHO05D002080 6.5e-06 56.2 126 31.0
EL10Ac3g05623 Beta vulgaris HOM05D002099 ORTHO05D002080 8.5e-06 55.8 123 30.1
CsaV3_6G051160 Cucumis sativus L. HOM05D002099 ORTHO05D002080 8.5e-06 55.8 125 30.4
HanXRQChr04g0116231 Helianthus annuus HOM05D002099 ORTHO05D002080 8.5e-06 55.8 212 27.4
SalBow7G2784 Salvia bowleyana HOM05D002099 ORTHO05D002080 8.5e-06 55.8 126 29.4


User provided reference genes

Program Settings