Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim05G0144100 Rhododendron simsii HOM05D006625 ORTHO05D008060 1.4e-144 516.2 243 100.0
vmacro19631 Vaccinium macrocarpon HOM05D006625 ORTHO05D008060 4.6e-95 351.7 268 66.4
Rhsim05G0143100 Rhododendron simsii HOM05D006625 ORTHO05D008060 9.0e-91 337.4 266 65.4
Actinidia19797 Actinidia chinensis HOM05D006625 ORTHO05D008060 1.1e-83 313.9 272 61.4
CSS0023168 Camellia sinensis var. sinensis HOM05D006625 ORTHO05D008060 2.9e-81 305.8 269 59.5
Dinv40271 Davidia involucrata HOM05D006625 ORTHO05D008060 6.4e-81 304.7 260 57.7
QL03p005837 Quercus lobata HOM05D006625 ORTHO05D008060 4.8e-76 288.5 261 55.9
Hma1.2p1_0617F.1_g190230 Hydrangea macrophylla HOM05D006625 ORTHO05D008060 2.4e-75 286.2 255 55.3
GSVIVG01000035001 Vitis vinifera HOM05D006625 ORTHO05D008060 3.4e-74 282.3 258 54.7
CiPaw.07G016100 Carya illinoinensis HOM05D006625 ORTHO05D008060 1.1e-72 277.3 270 53.0
Nitab4.5_0005388g0010 Nicotiana tabacum HOM05D006625 ORTHO05D008060 1.9e-72 276.6 260 52.7
Ciclev10002145m.g Citrus clementina HOM05D006625 ORTHO05D008060 2.5e-72 276.2 273 52.0
PGSC0003DMG400028585 Solanum tuberosum HOM05D006625 ORTHO05D008060 7.1e-72 274.6 260 52.7
Manes.09G165400 Manihot esculenta HOM05D006625 ORTHO05D008060 1.0e-70 270.8 257 54.1
Potri.005G035600 Populus trichocarpa HOM05D006625 ORTHO05D008060 1.3e-70 270.4 261 52.1
Cfa006572 Carpinus fangiana HOM05D006625 ORTHO05D008060 1.8e-70 270.0 270 53.0
Sopen01g042370 Solanum pennellii HOM05D006625 ORTHO05D008060 3.9e-70 268.9 273 50.2
Solyc01g098830.3 Solanum lycopersicum HOM05D006625 ORTHO05D008060 8.7e-70 267.7 273 49.8
Nitab4.5_0002031g0060 Nicotiana tabacum HOM05D006625 ORTHO05D008060 7.4e-69 264.6 287 48.8
Lj5g0018133 Lotus japonicus HOM05D006625 ORTHO05D008060 1.3e-68 263.8 270 50.7
arahy.Tifrunner.gnm1.ann1.A4Z4CH Arachis hypogaea HOM05D006625 ORTHO05D008060 1.6e-68 263.5 267 50.9
arahy.Tifrunner.gnm1.ann1.P1SK02 Arachis hypogaea HOM05D006625 ORTHO05D008060 3.7e-68 262.3 267 50.6
Peaxi162Scf00037g00234 Petunia axillaris HOM05D006625 ORTHO05D008060 8.2e-68 261.2 283 50.5
DCAR_029427 Daucus carota HOM05D006625 ORTHO05D008060 1.8e-67 260.0 259 51.0
Cc00_g15580 Coffea canephora HOM05D006625 ORTHO05D008060 9.0e-67 257.7 253 52.2
Prupe.6G327800 Prunus persica HOM05D006625 ORTHO05D008060 2.0e-66 256.5 255 51.8
Glyma.10G155500 Glycine max HOM05D006625 ORTHO05D008060 2.6e-66 256.1 257 49.8
Medtr1g082740 Medicago truncatula HOM05D006625 ORTHO05D008060 4.5e-66 255.4 269 48.7
TPR.G6108 Trifolium pratense HOM05D006625 ORTHO05D008060 4.5e-66 255.4 270 49.6
Ca_10103_v3 Cicer arietinum L. HOM05D006625 ORTHO05D008060 1.0e-65 254.2 263 48.7
MSTRG.28006 Avicennia marina HOM05D006625 ORTHO05D008060 1.3e-65 253.8 266 49.2
CANSAT54G0428 Cannabis sativa HOM05D006625 ORTHO05D008060 1.7e-65 253.4 266 48.1
FAN14G5181 Fragaria x ananassa HOM05D001310 ORTHO05D008060 2.2e-65 253.1 252 50.0
Thecc.05G305300 Theobroma cacao HOM05D006625 ORTHO05D008060 2.2e-65 253.1 272 51.1
Cpa.g.sc48.33 Carica papaya HOM05D006625 ORTHO05D008060 2.9e-65 252.7 267 51.7
FvH4_6g05630 Fragaria vesca HOM05D006625 ORTHO05D008060 3.8e-65 252.3 252 49.6
Glyma.20G232800 Glycine max HOM05D006625 ORTHO05D008060 6.5e-65 251.5 257 48.6
Psat6g149480 Pisum sativum HOM05D006625 ORTHO05D008060 6.5e-65 251.5 269 48.3
FAN05G0213 Fragaria x ananassa HOM05D001310 ORTHO05D008060 8.5e-65 251.1 252 50.4
FAN14G5649 Fragaria x ananassa HOM05D001310 ORTHO05D008060 8.5e-65 251.1 252 49.6
TAR362G1087 Trochodendron aralioides HOM05D006625 ORTHO05D008060 1.1e-64 250.8 260 50.4
Duzib106G0694 Durio zibethinus HOM05D006625 ORTHO05D008060 2.5e-64 249.6 262 51.5
Lalb_Chr21g0310751 Lupinus albus HOM05D006625 ORTHO05D008060 1.6e-63 246.9 264 48.5
FAN09G2049 Fragaria x ananassa HOM05D001310 ORTHO05D008060 6.1e-63 245.0 252 48.8
Sabra05G0036200 Salix brachista HOM05D006625 ORTHO05D008060 1.0e-62 244.2 287 46.0
COL.COLO4_13497 Corchorus olitorius HOM05D006625 ORTHO05D008060 6.7e-62 241.5 260 51.2
RcHm_v2.0_Chr3g0454381 Rosa chinensis HOM05D006625 ORTHO05D008060 8.8e-62 241.1 256 48.4
Eucgr.H04479 Eucalyptus grandis HOM05D006625 ORTHO05D008060 3.3e-61 239.2 259 48.6
ClCG02G015910 Citrullus lanatus HOM05D006625 ORTHO05D008060 9.7e-61 237.7 270 47.8
Lsat_1_v5_gn_2_64300 Lactuca sativa HOM05D006625 ORTHO05D008060 1.3e-60 237.3 266 45.9
Hund07059 Selenicereus undatus HOM05D006625 ORTHO05D008060 2.2e-60 236.5 264 46.6
THA.LOC104821879 Tarenaya hassleriana HOM05D006625 ORTHO05D008060 3.7e-60 235.7 262 46.2
ECA238G3785 Erigeron canadensis HOM05D006625 ORTHO05D008060 4.8e-60 235.3 264 47.3
CsaV3_2G005130 Cucumis sativus L. HOM05D006625 ORTHO05D008060 6.3e-60 235.0 258 48.4
SalBow3G1529 Salvia bowleyana HOM05D006857 ORTHO05D008679 6.3e-60 235.0 268 45.1
VMungo0720G0027 Vigna mungo HOM05D006625 ORTHO05D008060 6.3e-60 235.0 279 45.9
HanXRQChr10g0295051 Helianthus annuus HOM05D006625 ORTHO05D008060 1.8e-59 233.4 262 46.6
Migut.N01952 Erythranthe guttata HOM05D006625 ORTHO05D008060 2.4e-59 233.0 255 45.5
Aa31LG5G15780 Aethionema arabicum HOM05D006625 ORTHO05D008060 5.3e-59 231.9 269 43.9
PGR031G0551 Punica granatum HOM05D006625 ORTHO05D008060 5.3e-59 231.9 256 48.8
Oeu043355.5 Olea europaea HOM05D006625 ORTHO05D008060 9.1e-59 231.1 245 49.4
TWI56G0867 Tripterygium wilfordii HOM05D006625 ORTHO05D008060 1.5e-58 230.3 230 51.3
Phvul.007G181000 Phaseolus vulgaris HOM05D006625 ORTHO05D008060 1.0e-57 227.6 257 45.9
Sc16g0008430 Simmondsia chinensis HOM05D006625 ORTHO05D008060 1.7e-57 226.9 266 44.0
Gorai.007G001300 Gossypium raimondii HOM05D006625 ORTHO05D008060 3.8e-57 225.7 267 46.8
Gohir.D11G000400 Gossypium hirsutum HOM05D006625 ORTHO05D008060 8.5e-57 224.6 267 46.8
Sed0016985 Sechium edule HOM05D006625 ORTHO05D008060 8.5e-57 224.6 237 47.7
AL3G15690 Arabidopsis lyrata HOM05D006625 ORTHO05D008060 1.9e-56 223.4 268 45.9
Thhalv10021312m.g Eutrema salsugineum HOM05D006625 ORTHO05D008060 1.9e-56 223.4 275 43.3
MD04G1207100 Malus domestica HOM05D006625 ORTHO05D008060 2.5e-56 223.0 258 46.9
Nn4g26222 Nelumbo nucifera HOM05D006625 ORTHO05D008060 2.5e-56 223.0 268 44.4
SGA_v2.0_scaffold81G26083 Striga asiatica HOM05D006625 ORTHO05D008060 4.2e-56 222.2 263 46.0
Aqoxy2G03295 Aquilegia oxysepala HOM05D006625 ORTHO05D008060 5.5e-56 221.9 254 43.7
EL10Ac4g09338 Beta vulgaris HOM05D006625 ORTHO05D008060 1.2e-55 220.7 256 45.3
FAN02G3749 Fragaria x ananassa HOM05D006625 ORTHO05D008060 3.6e-55 219.2 234 48.3
BolC5t34854H Brassica oleracea HOM05D006625 ORTHO05D008060 7.9e-55 218.0 265 43.4
Haze_04209 Corylus avellana HOM05D006625 ORTHO05D008060 7.9e-55 218.0 240 49.6
C05p61940 Brassica napus HOM05D006625 ORTHO05D008060 1.4e-54 217.2 265 43.4
BraA05t23018Z Brassica rapa HOM05D006625 ORTHO05D008060 2.3e-54 216.5 270 43.0
A05p42330 Brassica napus HOM05D006625 ORTHO05D008060 5.1e-54 215.3 270 42.6
Lj5A588T22 Lonicera japonica HOM05D006625 ORTHO05D008060 5.1e-54 215.3 242 48.3
Lj5A576T32 Lonicera japonica HOM05D006625 ORTHO05D008060 8.8e-54 214.5 242 49.2
Lj5A9T24 Lonicera japonica HOM05D006625 ORTHO05D008060 8.8e-54 214.5 244 49.2
BcaC05g30013 Brassica carinata HOM05D006625 ORTHO05D008060 1.5e-53 213.8 265 43.8
Carub.0003s0450 Capsella rubella HOM05D006625 ORTHO05D008060 2.0e-53 213.4 266 42.9
Sp3g04100 Schrenkiella parvula HOM05D006625 ORTHO05D008060 2.0e-53 213.4 258 43.4
Lj5A588T21 Lonicera japonica HOM05D006625 ORTHO05D008060 5.7e-53 211.8 243 47.7
BcaC05g30142 Brassica carinata HOM05D006625 ORTHO05D008060 1.1e-51 207.6 266 43.2
TWI77G0294 Tripterygium wilfordii HOM05D006625 ORTHO05D008060 1.1e-51 207.6 225 48.4
Lj5A11T18 Lonicera japonica HOM05D006625 ORTHO05D008060 2.0e-50 203.4 239 48.1
PSO339G1258 Papaver somniferum HOM05D006625 ORTHO05D008060 4.5e-50 202.2 265 41.1
CiPaw.07G016300 Carya illinoinensis HOM05D006625 ORTHO05D008060 5.9e-50 201.8 235 45.1
ATR0626G410 Amborella trichopoda HOM05D006625 ORTHO05D008060 2.9e-49 199.5 252 45.2
Gohir.A11G000800 Gossypium hirsutum HOM05D006625 ORTHO05D008060 6.1e-47 191.8 240 46.7
QL03p006436 Quercus lobata HOM05D006625 ORTHO05D008060 4.5e-42 175.6 113 68.1
Zm00001eb212380 Zea mays HOM05D006625 ORTHO05D008060 1.9e-40 170.2 263 40.3
PSO801G0350 Papaver somniferum HOM05D000048 ORTHO05D000207 4.7e-39 165.6 199 42.7
MELO3C004279.2 Cucumis melo HOM05D006625 ORTHO05D008060 6.1e-39 165.2 165 50.9
Lj5A1T20 Lonicera japonica HOM05D006625 ORTHO05D008060 1.5e-37 160.6 218 44.5
CDE11G1261 Ceratophyllum demersum HOM05D006625 ORTHO05D008060 1.3e-36 157.5 214 39.3
unitig_578.g16758 Utricularia gibba HOM05D004142 ORTHO05D005411 1.6e-34 150.6 260 35.8
Lj5A1T18 Lonicera japonica HOM05D006625 ORTHO05D008060 7.7e-34 148.3 218 41.3
COL.COLO4_10909 Corchorus olitorius HOM05D006625 ORTHO05D008060 3.0e-30 136.3 243 37.0
AUR62005130 Chenopodium quinoa HOM05D006625 ORTHO05D008060 5.2e-30 135.6 175 45.1
AT3G05250 Arabidopsis thaliana HOM05D006625 ORTHO05D008060 1.8e-27 127.1 210 37.1
Atru.chr2.446 Acer truncatum HOM05D000091 ORTHO05D009985 1.2e-26 124.4 81 64.2
CARHR079590 Cardamine hirsuta HOM05D006625 ORTHO05D008060 1.6e-26 124.0 215 36.7
Hma1.2p1_0617F.1_g190240 Hydrangea macrophylla HOM05D006625 ORTHO05D008060 3.8e-25 119.4 105 58.1
Lj5A11T17 Lonicera japonica HOM05D006625 ORTHO05D008060 3.8e-25 119.4 129 51.9
FAN05G4155 Fragaria x ananassa HOM05D001310 ORTHO05D001283 5.5e-24 115.5 114 50.0
Mapoly0224s0007 Marchantia polymorpha HOM05D006625 ORTHO05D008060 9.5e-24 114.8 214 30.8
MD12G1221000 Malus domestica HOM05D006625 ORTHO05D008060 3.6e-23 112.8 112 50.0
AagrBONN_evm.TU.Sc2ySwM_362.2578 Anthoceros agrestis HOM05D006625 ORTHO05D008060 1.5e-21 107.5 229 31.9
AUR62000843 Chenopodium quinoa HOM05D006625 ORTHO05D008060 8.3e-20 101.7 166 38.0
Lj5A18T33 Lonicera japonica HOM05D006625 ORTHO05D008060 9.2e-19 98.2 111 50.5
Lj5A10T21 Lonicera japonica HOM05D006625 ORTHO05D008060 1.2e-18 97.8 113 49.6
MBI19_g05826_MAGBIO Magnolia biondii HOM05D006625 ORTHO05D008060 3.9e-17 92.8 201 33.3
Pp3c3_27350 Physcomitrium patens HOM05D006625 ORTHO05D008060 4.7e-15 85.9 259 26.6
MBI19_g05827_MAGBIO Magnolia biondii HOM05D006625 ORTHO05D008060 8.3e-12 75.1 120 39.2
Os03g0809800 Oryza sativa ssp. japonica HOM05D006625 ORTHO05D008060 1.1e-11 74.7 122 39.3
BolC3t17028H Brassica oleracea HOM05D006625 ORTHO05D008060 1.4e-11 74.3 217 24.9
HPP92_025561 Vanilla planifolia HOM05D006625 ORTHO05D008060 2.7e-10 70.1 68 55.9
CSS0021359 Camellia sinensis var. sinensis HOM05D006625 ORTHO05D008060 1.0e-09 68.2 96 42.7


User provided reference genes

Program Settings