Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim05G0143100 Rhododendron simsii HOM05D006625 ORTHO05D008060 1.5e-228 795.8 407 100.0
vmacro19631 Vaccinium macrocarpon HOM05D006625 ORTHO05D008060 1.9e-109 400.2 233 82.4
Actinidia19797 Actinidia chinensis HOM05D006625 ORTHO05D008060 3.1e-96 356.3 230 73.9
Dinv40271 Davidia involucrata HOM05D006625 ORTHO05D008060 3.8e-94 349.4 233 69.1
CSS0023168 Camellia sinensis var. sinensis HOM05D006625 ORTHO05D008060 8.5e-94 348.2 233 71.2
GSVIVG01000035001 Vitis vinifera HOM05D006625 ORTHO05D008060 2.8e-89 333.2 234 67.9
Rhsim05G0144100 Rhododendron simsii HOM05D006625 ORTHO05D008060 1.1e-88 331.3 266 65.4
Nitab4.5_0002031g0060 Nicotiana tabacum HOM05D006625 ORTHO05D008060 9.1e-88 328.2 289 55.7
Hma1.2p1_0617F.1_g190230 Hydrangea macrophylla HOM05D006625 ORTHO05D008060 6.5e-86 322.0 233 65.2
Ciclev10002145m.g Citrus clementina HOM05D006625 ORTHO05D008060 1.6e-84 317.4 234 65.0
QL03p005837 Quercus lobata HOM05D006625 ORTHO05D008060 8.0e-84 315.1 233 64.4
Nitab4.5_0005388g0010 Nicotiana tabacum HOM05D006625 ORTHO05D008060 1.8e-83 313.9 233 62.2
CiPaw.07G016100 Carya illinoinensis HOM05D006625 ORTHO05D008060 6.8e-83 312.0 234 64.5
Cfa006572 Carpinus fangiana HOM05D006625 ORTHO05D008060 8.8e-83 311.6 234 63.7
Sabra05G0036200 Salix brachista HOM05D006625 ORTHO05D008060 3.4e-82 309.7 275 56.0
Oeu043355.5 Olea europaea HOM05D006625 ORTHO05D008060 2.8e-81 306.6 236 59.7
Potri.005G035600 Populus trichocarpa HOM05D006625 ORTHO05D008060 2.8e-81 306.6 232 61.2
PGSC0003DMG400028585 Solanum tuberosum HOM05D006625 ORTHO05D008060 2.8e-81 306.6 233 60.9
Manes.09G165400 Manihot esculenta HOM05D006625 ORTHO05D008060 3.7e-81 306.2 236 63.1
Sopen01g042370 Solanum pennellii HOM05D006625 ORTHO05D008060 4.8e-81 305.8 233 60.5
Solyc01g098830.3 Solanum lycopersicum HOM05D006625 ORTHO05D008060 1.8e-80 303.9 233 60.1
Lj5A588T22 Lonicera japonica HOM05D006625 ORTHO05D008060 1.2e-79 301.2 264 58.3
CANSAT54G0428 Cannabis sativa HOM05D006625 ORTHO05D008060 1.6e-79 300.8 234 60.7
Lj5A588T21 Lonicera japonica HOM05D006625 ORTHO05D008060 2.0e-79 300.4 250 58.8
Peaxi162Scf00037g00234 Petunia axillaris HOM05D006625 ORTHO05D008060 2.0e-79 300.4 243 61.3
Lj5A9T24 Lonicera japonica HOM05D006625 ORTHO05D008060 4.5e-79 299.3 251 59.0
TAR362G1087 Trochodendron aralioides HOM05D006625 ORTHO05D008060 7.7e-79 298.5 234 62.0
arahy.Tifrunner.gnm1.ann1.A4Z4CH Arachis hypogaea HOM05D006625 ORTHO05D008060 1.7e-78 297.4 234 59.8
Cpa.g.sc48.33 Carica papaya HOM05D006625 ORTHO05D008060 2.3e-78 297.0 234 61.5
Haze_04209 Corylus avellana HOM05D006625 ORTHO05D008060 8.6e-78 295.0 237 61.6
arahy.Tifrunner.gnm1.ann1.P1SK02 Arachis hypogaea HOM05D006625 ORTHO05D008060 1.1e-77 294.7 234 59.0
Prupe.6G327800 Prunus persica HOM05D006625 ORTHO05D008060 1.1e-77 294.7 234 62.0
Cc00_g15580 Coffea canephora HOM05D006625 ORTHO05D008060 2.5e-77 293.5 232 60.3
FAN02G3749 Fragaria x ananassa HOM05D006625 ORTHO05D008060 3.3e-77 293.1 227 62.1
FvH4_6g05630 Fragaria vesca HOM05D006625 ORTHO05D008060 5.5e-77 292.4 227 61.7
FAN05G0213 Fragaria x ananassa HOM05D001310 ORTHO05D008060 9.5e-77 291.6 227 62.1
Lj5A576T32 Lonicera japonica HOM05D006625 ORTHO05D008060 9.5e-77 291.6 250 58.8
DCAR_029427 Daucus carota HOM05D006625 ORTHO05D008060 1.6e-76 290.8 227 61.2
Lj5g0018133 Lotus japonicus HOM05D006625 ORTHO05D008060 4.7e-76 289.3 261 55.2
Glyma.20G232800 Glycine max HOM05D006625 ORTHO05D008060 6.1e-76 288.9 266 54.1
FAN14G5181 Fragaria x ananassa HOM05D001310 ORTHO05D008060 2.3e-75 287.0 227 60.8
Glyma.10G155500 Glycine max HOM05D006625 ORTHO05D008060 5.2e-75 285.8 266 54.1
Lalb_Chr21g0310751 Lupinus albus HOM05D006625 ORTHO05D008060 5.2e-75 285.8 262 55.0
RcHm_v2.0_Chr3g0454381 Rosa chinensis HOM05D006625 ORTHO05D008060 5.2e-75 285.8 255 56.5
MSTRG.28006 Avicennia marina HOM05D006625 ORTHO05D008060 8.9e-75 285.0 252 55.6
FAN09G2049 Fragaria x ananassa HOM05D001310 ORTHO05D008060 8.9e-75 285.0 227 60.4
FAN14G5649 Fragaria x ananassa HOM05D001310 ORTHO05D008060 8.9e-75 285.0 227 60.4
VMungo0720G0027 Vigna mungo HOM05D006625 ORTHO05D008060 5.7e-74 282.3 263 53.6
Hund07059 Selenicereus undatus HOM05D006625 ORTHO05D008060 7.5e-74 282.0 235 56.2
Lj5A11T18 Lonicera japonica HOM05D006625 ORTHO05D008060 1.3e-73 281.2 236 59.3
Thecc.05G305300 Theobroma cacao HOM05D006625 ORTHO05D008060 2.2e-73 280.4 236 58.1
Psat6g149480 Pisum sativum HOM05D006625 ORTHO05D008060 2.8e-73 280.0 234 56.8
TPR.G6108 Trifolium pratense HOM05D006625 ORTHO05D008060 2.8e-73 280.0 238 58.0
Duzib106G0694 Durio zibethinus HOM05D006625 ORTHO05D008060 3.7e-73 279.6 236 58.1
Ca_10103_v3 Cicer arietinum L. HOM05D006625 ORTHO05D008060 3.2e-72 276.6 234 56.8
Lsat_1_v5_gn_2_64300 Lactuca sativa HOM05D006625 ORTHO05D008060 4.1e-72 276.2 231 55.8
Sc16g0008430 Simmondsia chinensis HOM05D006625 ORTHO05D008060 9.2e-72 275.0 230 55.7
HanXRQChr10g0295051 Helianthus annuus HOM05D006625 ORTHO05D008060 2.7e-71 273.5 229 56.8
Medtr1g082740 Medicago truncatula HOM05D006625 ORTHO05D008060 2.7e-71 273.5 237 55.7
EL10Ac4g09338 Beta vulgaris HOM05D006625 ORTHO05D008060 5.9e-71 272.3 238 55.0
ECA238G3785 Erigeron canadensis HOM05D006625 ORTHO05D008060 1.7e-70 270.8 229 57.2
THA.LOC104821879 Tarenaya hassleriana HOM05D006625 ORTHO05D008060 8.6e-70 268.5 231 53.7
Migut.N01952 Erythranthe guttata HOM05D006625 ORTHO05D008060 2.5e-69 266.9 233 54.1
Eucgr.H04479 Eucalyptus grandis HOM05D006625 ORTHO05D008060 5.6e-69 265.8 234 54.3
ClCG02G015910 Citrullus lanatus HOM05D006625 ORTHO05D008060 2.1e-68 263.8 234 54.7
Gohir.A11G000800 Gossypium hirsutum HOM05D006625 ORTHO05D008060 6.1e-68 262.3 246 53.7
SalBow3G1529 Salvia bowleyana HOM05D006857 ORTHO05D008679 8.0e-68 261.9 227 52.9
COL.COLO4_13497 Corchorus olitorius HOM05D006625 ORTHO05D008060 1.0e-67 261.5 231 55.4
CsaV3_2G005130 Cucumis sativus L. HOM05D006625 ORTHO05D008060 2.3e-67 260.4 233 53.6
Gorai.007G001300 Gossypium raimondii HOM05D006625 ORTHO05D008060 2.3e-67 260.4 237 54.0
Aa31LG5G15780 Aethionema arabicum HOM05D006625 ORTHO05D008060 4.0e-67 259.6 237 51.9
Gohir.D11G000400 Gossypium hirsutum HOM05D006625 ORTHO05D008060 5.2e-67 259.2 237 54.0
MD04G1207100 Malus domestica HOM05D006625 ORTHO05D008060 5.2e-67 259.2 227 55.5
Phvul.007G181000 Phaseolus vulgaris HOM05D006625 ORTHO05D008060 6.8e-67 258.8 263 49.8
Nn4g26222 Nelumbo nucifera HOM05D006625 ORTHO05D008060 1.2e-66 258.1 234 52.1
TWI56G0867 Tripterygium wilfordii HOM05D006625 ORTHO05D008060 9.8e-66 255.0 244 53.3
CiPaw.07G016300 Carya illinoinensis HOM05D006625 ORTHO05D008060 1.9e-64 250.8 284 48.9
Thhalv10021312m.g Eutrema salsugineum HOM05D006625 ORTHO05D008060 1.9e-64 250.8 236 50.0
PGR031G0551 Punica granatum HOM05D006625 ORTHO05D008060 1.9e-64 250.8 233 51.9
SGA_v2.0_scaffold81G26083 Striga asiatica HOM05D006625 ORTHO05D008060 3.2e-64 250.0 233 54.5
AL3G15690 Arabidopsis lyrata HOM05D006625 ORTHO05D008060 1.6e-63 247.7 237 51.1
Sp3g04100 Schrenkiella parvula HOM05D006625 ORTHO05D008060 2.7e-63 246.9 235 49.4
Aqoxy2G03295 Aquilegia oxysepala HOM05D006625 ORTHO05D008060 4.6e-63 246.1 230 48.3
Carub.0003s0450 Capsella rubella HOM05D006625 ORTHO05D008060 3.0e-62 243.4 238 48.7
BcaC05g30013 Brassica carinata HOM05D006625 ORTHO05D008060 3.3e-61 240.0 235 49.8
C05p61940 Brassica napus HOM05D006625 ORTHO05D008060 4.7e-60 236.1 235 48.1
BcaC05g30142 Brassica carinata HOM05D006625 ORTHO05D008060 2.3e-59 233.8 236 49.2
BraA05t23018Z Brassica rapa HOM05D006625 ORTHO05D008060 2.3e-59 233.8 235 48.1
BolC5t34854H Brassica oleracea HOM05D006625 ORTHO05D008060 3.1e-59 233.4 235 47.7
PSO339G1258 Papaver somniferum HOM05D006625 ORTHO05D008060 4.0e-59 233.0 241 49.0
A05p42330 Brassica napus HOM05D006625 ORTHO05D008060 5.2e-59 232.6 235 47.7
Sed0016985 Sechium edule HOM05D006625 ORTHO05D008060 8.9e-59 231.9 232 49.1
ATR0626G410 Amborella trichopoda HOM05D006625 ORTHO05D008060 1.9e-56 224.2 230 50.0
TWI77G0294 Tripterygium wilfordii HOM05D006625 ORTHO05D008060 1.9e-56 224.2 195 55.9
AUR62005130 Chenopodium quinoa HOM05D006625 ORTHO05D008060 7.3e-53 212.2 177 58.2
PSO801G0350 Papaver somniferum HOM05D000048 ORTHO05D000207 2.4e-48 197.2 177 53.1
CDE11G1261 Ceratophyllum demersum HOM05D006625 ORTHO05D008060 1.6e-47 194.5 230 41.7
CARHR079590 Cardamine hirsuta HOM05D006625 ORTHO05D008060 1.7e-46 191.0 262 41.6
Zm00001eb212380 Zea mays HOM05D006625 ORTHO05D008060 6.6e-46 189.1 233 44.6
AT3G05250 Arabidopsis thaliana HOM05D006625 ORTHO05D008060 1.5e-45 188.0 208 45.7
QL03p006436 Quercus lobata HOM05D006625 ORTHO05D008060 8.1e-44 182.2 114 70.2
MELO3C004279.2 Cucumis melo HOM05D006625 ORTHO05D008060 1.4e-43 181.4 133 61.7
Lj5A1T20 Lonicera japonica HOM05D006625 ORTHO05D008060 5.8e-42 176.0 250 43.6
unitig_578.g16758 Utricularia gibba HOM05D004142 ORTHO05D005411 7.6e-42 175.6 246 39.8
Lj5A1T18 Lonicera japonica HOM05D006625 ORTHO05D008060 1.2e-39 168.3 251 42.2
AUR62000843 Chenopodium quinoa HOM05D006625 ORTHO05D008060 2.5e-37 160.6 172 48.3
SEGI_37357 Sequoiadendron giganteum HOM05D006625 ORTHO05D008060 6.2e-36 156.0 192 40.1
MD12G1221000 Malus domestica HOM05D006625 ORTHO05D008060 8.1e-36 155.6 136 54.4
MBI19_g05826_MAGBIO Magnolia biondii HOM05D006625 ORTHO05D008060 2.2e-33 147.5 102 67.6
Lj5A11T17 Lonicera japonica HOM05D006625 ORTHO05D008060 3.9e-30 136.7 131 55.0
COL.COLO4_10909 Corchorus olitorius HOM05D006625 ORTHO05D008060 7.3e-29 132.5 240 37.1
Mapoly0224s0007 Marchantia polymorpha HOM05D006625 ORTHO05D008060 4.8e-28 129.8 199 36.2
FAN05G4155 Fragaria x ananassa HOM05D001310 ORTHO05D001283 6.2e-28 129.4 115 54.8
Hma1.2p1_0617F.1_g190240 Hydrangea macrophylla HOM05D006625 ORTHO05D008060 4.0e-27 126.7 106 58.5
Os03g0809800 Oryza sativa ssp. japonica HOM05D006625 ORTHO05D008060 1.5e-26 124.8 179 41.9
AagrBONN_evm.TU.Sc2ySwM_362.2578 Anthoceros agrestis HOM05D006625 ORTHO05D008060 4.2e-24 116.7 201 34.3
Lj5A18T33 Lonicera japonica HOM05D006625 ORTHO05D008060 9.3e-24 115.5 109 54.1
Lj5A10T21 Lonicera japonica HOM05D006625 ORTHO05D008060 1.0e-22 112.1 111 52.3
Pp3c3_27350 Physcomitrium patens HOM05D006625 ORTHO05D008060 5.1e-22 109.8 242 31.0
BolC3t17028H Brassica oleracea HOM05D006625 ORTHO05D008060 2.8e-20 104.0 196 32.7
Atru.chr2.446 Acer truncatum HOM05D000091 ORTHO05D009985 3.1e-19 100.5 56 75.0
MBI19_g05827_MAGBIO Magnolia biondii HOM05D006625 ORTHO05D008060 3.0e-14 84.0 119 38.7
CSS0021359 Camellia sinensis var. sinensis HOM05D006625 ORTHO05D008060 3.9e-14 83.6 91 48.4
MD12G1221200 Malus domestica HOM05D006625 ORTHO05D008060 3.7e-12 77.0 53 64.2
HPP92_025561 Vanilla planifolia HOM05D006625 ORTHO05D008060 3.1e-11 73.9 88 44.3
CBR_g7977 Chara braunii HOM05D006625 ORTHO05D008060 1.4e-08 65.1 128 31.2
MD13G1171700 Malus domestica HOM05D007775 ORTHO05D009858 3.5e-07 60.5 90 36.7
CAN.G256.16 Capsicum annuum HOM05D007775 ORTHO05D009858 2.3e-06 57.8 92 43.5
CiPaw.02G085200 Carya illinoinensis HOM05D007775 ORTHO05D009858 2.3e-06 57.8 91 38.5
Prupe.1G140100 Prunus persica HOM05D007775 ORTHO05D009858 5.1e-06 56.6 88 36.4
FAN07G2931 Fragaria x ananassa HOM05D007775 ORTHO05D009858 8.7e-06 55.8 90 34.4


User provided reference genes

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