Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim05G0139400 Rhododendron simsii HOM05D005965 ORTHO05D007283 6.2e-285 983.4 487 100.0
Actinidia21493 Actinidia chinensis HOM05D005965 ORTHO05D007283 1.3e-213 746.5 488 77.7
CSS0001755 Camellia sinensis var. sinensis HOM05D005965 ORTHO05D007283 5.1e-210 734.6 489 78.1
vmacro19747 Vaccinium macrocarpon HOM05D005965 ORTHO05D007283 5.1e-202 708.0 454 81.1
GSVIVG01031150001 Vitis vinifera HOM05D005965 ORTHO05D007283 2.1e-187 659.4 487 70.6
MD04G1201200 Malus domestica HOM05D005965 ORTHO05D007283 3.6e-184 648.7 489 68.5
Gorai.007G299800 Gossypium raimondii HOM05D005965 ORTHO05D007283 4.9e-181 638.3 489 68.9
Gohir.D11G277600 Gossypium hirsutum HOM05D005965 ORTHO05D007283 1.2e-179 633.6 489 68.1
TAR362G0609 Trochodendron aralioides HOM05D005965 ORTHO05D007283 3.5e-179 632.1 487 68.4
Prupe.6G321300 Prunus persica HOM05D005965 ORTHO05D007283 1.5e-177 626.7 490 66.7
Cfa006624 Carpinus fangiana HOM05D005965 ORTHO05D007283 9.6e-177 624.0 494 68.0
CiPaw.07G021000 Carya illinoinensis HOM05D005965 ORTHO05D007283 1.6e-176 623.2 490 66.5
Oeu043357.2 Olea europaea HOM05D005965 ORTHO05D007283 2.1e-176 622.9 490 65.9
Atru.chr2.26 Acer truncatum HOM05D005965 ORTHO05D007283 5.3e-175 618.2 490 67.6
MSTRG.20421 Avicennia marina HOM05D005965 ORTHO05D007283 4.5e-174 615.1 486 65.4
DCAR_003352 Daucus carota HOM05D005965 ORTHO05D007283 1.3e-173 613.6 506 63.6
Sabra13G0016500 Salix brachista HOM05D005965 ORTHO05D007283 4.9e-173 611.7 494 66.6
QL03p021207 Quercus lobata HOM05D005965 ORTHO05D007283 1.2e-171 607.1 493 66.5
Ciclev10001128m.g Citrus clementina HOM05D005965 ORTHO05D007283 5.1e-170 601.7 488 66.0
Potri.013G017500 Populus trichocarpa HOM05D005965 ORTHO05D007283 6.7e-170 601.3 493 66.1
Manes.08G118100 Manihot esculenta HOM05D005965 ORTHO05D007283 1.9e-169 599.7 487 65.1
Gohir.A11G267700 Gossypium hirsutum HOM05D005965 ORTHO05D007283 2.5e-169 599.4 488 65.8
Sc16g0008610 Simmondsia chinensis HOM05D005965 ORTHO05D007283 5.7e-169 598.2 492 64.8
Sabra13G0020500 Salix brachista HOM05D005965 ORTHO05D007283 9.6e-169 597.4 467 67.9
TWI12G0462 Tripterygium wilfordii HOM05D005965 ORTHO05D007283 6.3e-168 594.7 490 66.3
Cpa.g.sc48.91 Carica papaya HOM05D005965 ORTHO05D007283 1.1e-167 594.0 490 65.1
Dinv40342 Davidia involucrata HOM05D005965 ORTHO05D007283 9.0e-167 590.9 378 78.6
CsaV3_2G006620 Cucumis sativus L. HOM05D005965 ORTHO05D007283 4.5e-166 588.6 493 63.5
ClCG02G015450 Citrullus lanatus HOM05D005965 ORTHO05D007283 2.9e-165 585.9 491 64.2
Sed0024378 Sechium edule HOM05D005965 ORTHO05D007283 2.9e-165 585.9 494 63.6
Sopen10g013470 Solanum pennellii HOM05D005965 ORTHO05D007283 5.0e-165 585.1 484 63.8
Solyc10g044780.2 Solanum lycopersicum HOM05D005965 ORTHO05D007283 1.4e-164 583.6 484 63.4
Lalb_Chr18g0045721 Lupinus albus HOM05D005965 ORTHO05D007283 1.9e-164 583.2 489 63.2
FAN14G0885 Fragaria x ananassa HOM05D005965 ORTHO05D007283 5.5e-164 581.6 489 63.0
PGSC0003DMG400007478 Solanum tuberosum HOM05D005965 ORTHO05D007283 5.5e-164 581.6 484 63.6
Aqoxy2G02987 Aquilegia oxysepala HOM05D005965 ORTHO05D007283 7.2e-164 581.3 491 62.9
Peaxi162Scf00949g00112 Petunia axillaris HOM05D005965 ORTHO05D007283 2.3e-162 576.2 484 63.8
PGR031G2641 Punica granatum HOM05D005965 ORTHO05D007283 2.3e-162 576.2 487 62.0
Nn3g21434 Nelumbo nucifera HOM05D005965 ORTHO05D007283 3.0e-162 575.9 486 61.3
Cc02_g33090 Coffea canephora HOM05D005965 ORTHO05D007283 3.9e-162 575.5 490 63.9
Lj1g0019406 Lotus japonicus HOM05D005965 ORTHO05D007283 8.7e-162 574.3 490 62.9
PSO151G0070 Papaver somniferum HOM05D005965 ORTHO05D007283 8.7e-162 574.3 487 62.4
Medtr7g113100 Medicago truncatula HOM05D005965 ORTHO05D007283 1.5e-161 573.5 489 62.2
Nitab4.5_0001129g0130 Nicotiana tabacum HOM05D005965 ORTHO05D007283 1.5e-161 573.5 496 63.5
RcHm_v2.0_Chr3g0455661 Rosa chinensis HOM05D005965 ORTHO05D007283 3.3e-161 572.4 490 62.4
Hma1.2p1_1292F.1_g273670 Hydrangea macrophylla HOM05D005965 ORTHO05D007283 1.6e-160 570.1 378 76.7
EL10Ac4g09921 Beta vulgaris HOM05D005965 ORTHO05D007283 6.3e-160 568.2 489 62.4
CAN.G1.32 Capsicum annuum HOM05D005965 ORTHO05D007283 1.8e-159 566.6 484 62.2
Migut.G01001 Erythranthe guttata HOM05D005965 ORTHO05D007283 1.5e-158 563.5 487 61.8
FAN02G0246 Fragaria x ananassa HOM05D005965 ORTHO05D007283 1.5e-158 563.5 490 61.6
Thhalv10020753m.g Eutrema salsugineum HOM05D005965 ORTHO05D007283 4.5e-158 562.0 486 60.9
AL3G16080 Arabidopsis lyrata HOM05D005965 ORTHO05D007283 2.5e-156 556.2 487 60.0
AT3G05480 Arabidopsis thaliana HOM05D005965 ORTHO05D007283 5.5e-156 555.1 486 59.1
ECA246G4331 Erigeron canadensis HOM05D005965 ORTHO05D007283 5.5e-156 555.1 493 62.1
COL.COLO4_10514 Corchorus olitorius HOM05D005965 ORTHO05D007283 9.4e-156 554.3 424 68.9
Psat0s4314g0040 Pisum sativum HOM05D005965 ORTHO05D007283 1.6e-155 553.5 513 58.7
C05p61750 Brassica napus HOM05D005965 ORTHO05D007283 2.7e-155 552.7 487 59.5
BcaC05g30118 Brassica carinata HOM05D005965 ORTHO05D007283 4.6e-155 552.0 486 59.5
Lj9A144T46 Lonicera japonica HOM05D005965 ORTHO05D007283 4.6e-155 552.0 378 74.3
arahy.Tifrunner.gnm1.ann1.DHC6FB Arachis hypogaea HOM05D005965 ORTHO05D007283 7.9e-155 551.2 471 63.3
Sp3g04310 Schrenkiella parvula HOM05D005965 ORTHO05D007283 7.9e-155 551.2 486 59.5
Hund07094 Selenicereus undatus HOM05D005965 ORTHO05D007283 7.9e-155 551.2 497 61.2
Eucgr.H04531 Eucalyptus grandis HOM05D005965 ORTHO05D007283 2.3e-154 549.7 496 60.5
TPR.G33209 Trifolium pratense HOM05D005965 ORTHO05D007283 3.9e-154 548.9 490 60.2
VMungo0540G0496 Vigna mungo HOM05D005965 ORTHO05D007283 3.9e-154 548.9 491 61.1
arahy.Tifrunner.gnm1.ann1.79NSX3 Arachis hypogaea HOM05D005965 ORTHO05D007283 5.1e-154 548.5 471 62.8
THA.LOC104818713 Tarenaya hassleriana HOM05D005965 ORTHO05D007283 5.1e-154 548.5 490 59.4
Glyma.19G233800 Glycine max HOM05D005965 ORTHO05D007283 7.4e-153 544.7 490 61.0
Carub.0003s0477 Capsella rubella HOM05D005965 ORTHO05D007283 2.8e-152 542.7 486 59.1
Glyma.03G236100 Glycine max HOM05D005965 ORTHO05D007283 6.3e-152 541.6 491 60.7
MBI19_g29225_MAGBIO Magnolia biondii HOM05D005965 ORTHO05D007283 1.4e-151 540.4 497 59.4
HanXRQChr03g0072671 Helianthus annuus HOM05D005965 ORTHO05D007283 1.2e-150 537.3 489 61.6
BcaC05g30164 Brassica carinata HOM05D005965 ORTHO05D007283 1.5e-150 537.0 512 57.2
BolC5t34833H Brassica oleracea HOM05D005965 ORTHO05D007283 1.5e-150 537.0 503 57.7
Ca_05803_v3 Cicer arietinum L. HOM05D005965 ORTHO05D007283 1.5e-150 537.0 424 66.3
Ah.04g161100 Amaranthus hybridus HOM05D005965 ORTHO05D007283 5.9e-150 535.0 489 60.3
unitig_699.g19668 Utricularia gibba HOM05D005965 ORTHO05D007283 1.3e-149 533.9 485 58.4
HanXRQChr03g0072661 Helianthus annuus HOM05D005965 ORTHO05D007283 1.4e-148 530.4 512 59.6
Hma1.2p1_1292F.1_g273680 Hydrangea macrophylla HOM05D005965 ORTHO05D007283 2.1e-147 526.6 375 72.5
FvH4_6g06510 Fragaria vesca HOM05D005965 ORTHO05D007283 1.4e-146 523.9 422 65.4
FAN05G3147 Fragaria x ananassa HOM05D005965 ORTHO05D007283 5.2e-146 521.9 422 65.2
Phvul.006G090000 Phaseolus vulgaris HOM05D005965 ORTHO05D007283 4.4e-145 518.8 493 59.2
SGA_v2.0_scaffold172G38992 Striga asiatica HOM05D005965 ORTHO05D007283 2.2e-144 516.5 510 56.9
Lsat_1_v5_gn_9_124801 Lactuca sativa HOM05D005965 ORTHO05D007283 9.1e-143 511.1 510 56.9
Aa31LG5G15920 Aethionema arabicum HOM05D005965 ORTHO05D007283 8.5e-141 504.6 538 52.6
AUR62000770 Chenopodium quinoa HOM05D005965 ORTHO05D007283 2.7e-139 499.6 439 62.4
Migut.G01092 Erythranthe guttata HOM05D005965 ORTHO05D007283 4.7e-139 498.8 379 66.8
Eucgr.H04558 Eucalyptus grandis HOM05D005965 ORTHO05D007283 1.1e-135 487.6 430 61.4
Thecc.05G312500 Theobroma cacao HOM05D005965 ORTHO05D007283 9.1e-135 484.6 409 63.3
HPP92_000400 Vanilla planifolia HOM05D005965 ORTHO05D007283 1.6e-126 457.2 494 51.8
ATR0796G244 Amborella trichopoda HOM05D005965 ORTHO05D007283 5.9e-126 455.3 498 51.8
HPP92_000403 Vanilla planifolia HOM05D005965 ORTHO05D007283 2.5e-124 449.9 494 51.6
Haze_04145 Corylus avellana HOM05D005965 ORTHO05D007283 3.0e-122 443.0 255 83.5
AUR62005199 Chenopodium quinoa HOM05D005965 ORTHO05D007283 8.8e-122 441.4 431 57.3
Migut.G01320 Erythranthe guttata HOM05D005965 ORTHO05D007283 4.4e-121 439.1 380 61.1
SHI18108 Sapria himalayana HOM05D005965 ORTHO05D007283 5.7e-121 438.7 336 67.9
SEGI_33282 Sequoiadendron giganteum HOM05D005965 ORTHO05D007283 4.5e-118 429.1 512 47.3
MELO3C031536.2 Cucumis melo HOM05D005965 ORTHO05D007283 2.3e-117 426.8 408 57.6
BraA05t23035Z Brassica rapa HOM05D005965 ORTHO05D007283 8.0e-115 418.3 397 56.7
CARHR079860 Cardamine hirsuta HOM05D005965 ORTHO05D007283 1.2e-113 414.5 255 75.3
Eucgr.H04576 Eucalyptus grandis HOM05D005965 ORTHO05D007283 1.8e-111 407.1 253 77.1
Os03g0345100 Oryza sativa ssp. japonica HOM05D005965 ORTHO05D007283 1.4e-106 391.0 501 46.3
Nitab4.5_0001057g0090 Nicotiana tabacum HOM05D005965 ORTHO05D007283 9.8e-105 384.8 390 56.2
CDE02G1352 Ceratophyllum demersum HOM05D005965 ORTHO05D007283 1.9e-103 380.6 414 50.0
Eucgr.H04573 Eucalyptus grandis HOM05D005965 ORTHO05D007283 4.0e-98 362.8 296 62.2
Eucgr.H04556 Eucalyptus grandis HOM05D005965 ORTHO05D007283 1.2e-97 361.3 429 51.3
Mapoly0078s0014 Marchantia polymorpha HOM05D005965 ORTHO05D007283 5.4e-95 352.4 430 47.2
Pp3c7_570 Physcomitrium patens HOM05D005965 ORTHO05D007283 6.0e-94 349.0 412 45.9
BraA05t19070Z Brassica rapa HOM05D005965 ORTHO05D007283 3.0e-93 346.7 242 68.2
Pp3c15_2650 Physcomitrium patens HOM05D005965 ORTHO05D007283 1.2e-91 341.3 400 46.0
SMO134G0282 Selaginella moellendorffii HOM05D005965 ORTHO05D007283 2.3e-90 337.0 384 47.4
SHI32441 Sapria himalayana HOM05D005965 ORTHO05D007283 5.8e-89 332.4 358 53.9
CBR_g180 Chara braunii HOM05D005965 ORTHO05D007283 1.1e-79 301.6 522 37.4
Zm00001eb016590 Zea mays HOM05D005965 ORTHO05D007283 5.6e-76 289.3 374 45.2
Eucgr.H04569 Eucalyptus grandis HOM05D005965 ORTHO05D007283 7.6e-73 278.9 491 40.5
Eucgr.H04571 Eucalyptus grandis HOM05D005965 ORTHO05D007283 6.4e-64 249.2 489 38.2
Thecc.07G184700 Theobroma cacao HOM05D005965 ORTHO05D007283 2.3e-53 214.2 191 62.3
Thecc.07G184800 Theobroma cacao HOM05D005965 ORTHO05D007283 2.5e-52 210.7 234 53.0
AL3G16050 Arabidopsis lyrata HOM05D005965 ORTHO05D007283 2.9e-48 197.2 332 38.3
Psat6g098120 Pisum sativum HOM05D005965 ORTHO05D007283 5.5e-47 193.0 202 52.0
Thhalv10022144m.g Eutrema salsugineum HOM05D005965 ORTHO05D007283 7.2e-39 166.0 285 39.6
CARHR079870 Cardamine hirsuta HOM05D005965 ORTHO05D007283 5.7e-36 156.4 195 50.8
Haze_04144 Corylus avellana HOM05D005965 ORTHO05D007283 2.2e-35 154.5 146 63.0
QL03p021253 Quercus lobata HOM05D005965 ORTHO05D007283 4.8e-35 153.3 94 74.5
PSO017G4250 Papaver somniferum HOM05D005965 ORTHO05D007283 2.4e-34 151.0 122 61.5
TAR633G2454 Trochodendron aralioides HOM05D005965 ORTHO05D007283 2.0e-28 131.3 134 56.0
Nitab4.5_0000524g0030 Nicotiana tabacum HOM05D005965 ORTHO05D007283 7.0e-26 122.9 210 41.9
MCO01G074 Micromonas commoda HOM05D005965 ORTHO05D007283 2.6e-25 120.9 393 28.2
DCAR_023086 Daucus carota HOM05D007620 ORTHO05D009568 6.5e-24 116.3 60 85.0
Eucgr.H04575 Eucalyptus grandis HOM05D005965 ORTHO05D007283 6.1e-22 109.8 122 46.7
TWI56G1489 Tripterygium wilfordii HOM05D005965 ORTHO05D007283 3.1e-18 97.4 73 71.2
Cre16.g682950 Chlamydomonas reinhardtii HOM05D005965 ORTHO05D007283 3.8e-16 90.5 172 34.3
PGSC0003DMG401006600 Solanum tuberosum HOM05D032728 ORTHO05D007283 9.1e-10 69.3 46 67.4
SMO274G0013 Selaginella moellendorffii HOM05D005965 ORTHO05D376736 2.9e-08 64.3 141 37.6


User provided reference genes

Program Settings