Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim05G0138400 Rhododendron simsii HOM05D005191 ORTHO05D006725 8.4e-48 193.4 97 100.0
Rhsim03G0251800 Rhododendron simsii HOM05D005191 ORTHO05D006725 1.4e-23 112.8 115 64.3
vmacro06157 Vaccinium macrocarpon HOM05D005191 ORTHO05D006725 2.7e-22 108.6 115 61.7
CSS0021683 Camellia sinensis var. sinensis HOM05D005191 ORTHO05D006725 3.0e-21 105.1 115 60.0
Actinidia38723 Actinidia chinensis HOM05D005191 ORTHO05D006725 1.5e-20 102.8 115 60.0
Dinv41468 Davidia involucrata HOM05D005191 ORTHO05D006725 1.9e-20 102.4 115 58.3
Lj7A435G51 Lonicera japonica HOM05D005191 ORTHO05D006725 5.6e-20 100.9 115 56.5
Thecc.09G133700 Theobroma cacao HOM05D005191 ORTHO05D006725 5.6e-20 100.9 115 56.5
PGR142G3543 Punica granatum HOM05D005191 ORTHO05D006725 9.6e-20 100.1 114 56.1
Cpa.g.sc46.51 Carica papaya HOM05D005191 ORTHO05D006725 1.6e-19 99.4 115 55.7
Eucgr.E03534 Eucalyptus grandis HOM05D005191 ORTHO05D006725 1.6e-19 99.4 115 55.7
RcHm_v2.0_Chr2g0087561 Rosa chinensis HOM05D005191 ORTHO05D006725 1.6e-19 99.4 115 55.7
THA.LOC104826555 Tarenaya hassleriana HOM05D005191 ORTHO05D006725 2.1e-19 99.0 115 55.7
GSVIVG01002648001 Vitis vinifera HOM05D005191 ORTHO05D006725 3.7e-19 98.2 115 54.8
COL.COLO4_15579 Corchorus olitorius HOM05D005191 ORTHO05D006725 4.8e-19 97.8 115 55.7
TWI32G0152 Tripterygium wilfordii HOM05D005191 ORTHO05D006725 4.8e-19 97.8 115 54.8
QL02p090053 Quercus lobata HOM05D005191 ORTHO05D006725 6.2e-19 97.4 115 53.9
TWI63G0111 Tripterygium wilfordii HOM05D005191 ORTHO05D006725 6.2e-19 97.4 115 55.7
Gohir.D08G100100 Gossypium hirsutum HOM05D005191 ORTHO05D006725 1.1e-18 96.7 115 53.9
Gorai.004G107900 Gossypium raimondii HOM05D005191 ORTHO05D006725 1.1e-18 96.7 115 53.9
Prupe.7G249300 Prunus persica HOM05D005191 ORTHO05D006725 1.1e-18 96.7 116 53.4
BcaC01g02222 Brassica carinata HOM05D005191 ORTHO05D006725 1.4e-18 96.3 115 54.8
C03p67700 Brassica napus HOM05D005191 ORTHO05D006725 1.4e-18 96.3 115 54.8
BolSC21t60229H Brassica oleracea HOM05D005191 ORTHO05D006725 1.4e-18 96.3 115 54.8
Atru.chr7.1956 Acer truncatum HOM05D005191 ORTHO05D006725 2.4e-18 95.5 115 53.0
FvH4_1g02530 Fragaria vesca HOM05D005191 ORTHO05D006725 2.4e-18 95.5 115 53.9
FAN19G1407 Fragaria x ananassa HOM05D005191 ORTHO05D006725 2.4e-18 95.5 115 53.9
FAN23G0864 Fragaria x ananassa HOM05D005191 ORTHO05D006725 2.4e-18 95.5 115 53.9
FAN26G1428 Fragaria x ananassa HOM05D005191 ORTHO05D006725 2.4e-18 95.5 115 53.9
FAN28G1162 Fragaria x ananassa HOM05D005191 ORTHO05D006725 2.4e-18 95.5 115 53.9
A06p26710 Brassica napus HOM05D005191 ORTHO05D006725 3.1e-18 95.1 115 53.9
CiPaw.03G249200 Carya illinoinensis HOM05D005191 ORTHO05D006725 3.1e-18 95.1 115 54.8
Migut.K00420 Erythranthe guttata HOM05D005191 ORTHO05D006725 3.1e-18 95.1 115 53.0
Lsat_1_v5_gn_8_61061 Lactuca sativa HOM05D005191 ORTHO05D006725 3.1e-18 95.1 121 52.1
MD02G1022800 Malus domestica HOM05D005191 ORTHO05D006725 3.1e-18 95.1 115 54.8
Aa31LG8G12200 Aethionema arabicum HOM05D005191 ORTHO05D006725 4.0e-18 94.7 115 53.9
BraA06t25606Z Brassica rapa HOM05D005191 ORTHO05D006725 4.0e-18 94.7 115 53.0
Rhsim10G0150400 Rhododendron simsii HOM05D005191 ORTHO05D030537 4.0e-18 94.7 54 87.0
ClCG06G011590 Citrullus lanatus HOM05D005191 ORTHO05D006725 5.3e-18 94.4 115 53.0
CsaV3_1G027890 Cucumis sativus L. HOM05D005191 ORTHO05D006725 5.3e-18 94.4 115 53.0
CAN.G1663.1 Capsicum annuum HOM05D005191 ORTHO05D006725 6.9e-18 94.0 121 52.1
CANSAT11G2540 Cannabis sativa HOM05D005191 ORTHO05D006725 9.0e-18 93.6 115 51.3
Actinidia26371 Actinidia chinensis HOM05D005191 ORTHO05D006725 1.2e-17 93.2 112 56.2
Lalb_Chr12g0198261 Lupinus albus HOM05D005191 ORTHO05D006725 1.2e-17 93.2 115 53.0
Nitab4.5_0000374g0090 Nicotiana tabacum HOM05D005191 ORTHO05D006725 1.2e-17 93.2 121 51.2
Cfa002299 Carpinus fangiana HOM05D005191 ORTHO05D006725 1.5e-17 92.8 115 53.0
Haze_25489 Corylus avellana HOM05D005191 ORTHO05D006725 1.5e-17 92.8 115 53.0
Sopen07g001100 Solanum pennellii HOM05D005191 ORTHO05D006725 1.5e-17 92.8 121 52.1
MD15G1165500 Malus domestica HOM05D005191 ORTHO05D006725 2.0e-17 92.4 115 53.9
Sabra18G0106500 Salix brachista HOM05D005191 ORTHO05D006725 2.0e-17 92.4 115 48.7
BcaB02g10775 Brassica carinata HOM05D005191 ORTHO05D006725 2.6e-17 92.0 115 53.0
CARHR104890 Cardamine hirsuta HOM05D005191 ORTHO05D006725 2.6e-17 92.0 115 53.9
Ciclev10007583m.g Citrus clementina HOM05D005191 ORTHO05D006725 2.6e-17 92.0 115 53.9
Solyc07g007810.3 Solanum lycopersicum HOM05D005191 ORTHO05D006725 2.6e-17 92.0 121 52.1
arahy.Tifrunner.gnm1.ann1.0L2UMW Arachis hypogaea HOM05D005191 ORTHO05D006725 3.4e-17 91.7 115 51.3
arahy.Tifrunner.gnm1.ann1.W0WM15 Arachis hypogaea HOM05D005191 ORTHO05D006725 3.4e-17 91.7 115 51.3
Sc18g0000280 Simmondsia chinensis HOM05D005191 ORTHO05D006725 3.4e-17 91.7 116 50.0
SGA_v2.0_scaffold63G21813 Striga asiatica HOM05D005191 ORTHO05D006725 3.4e-17 91.7 115 52.2
VMungo1215G2132 Vigna mungo HOM05D005191 ORTHO05D006725 3.4e-17 91.7 115 52.2
Cc06_g08000 Coffea canephora HOM05D005191 ORTHO05D006725 4.5e-17 91.3 115 52.2
Cc06_g08010 Coffea canephora HOM05D005191 ORTHO05D006725 4.5e-17 91.3 115 52.2
Manes.06G046300 Manihot esculenta HOM05D005191 ORTHO05D006725 5.8e-17 90.9 123 49.6
Sp3g26260 Schrenkiella parvula HOM05D005191 ORTHO05D006725 5.8e-17 90.9 115 53.0
TAR625G1134 Trochodendron aralioides HOM05D005191 ORTHO05D006725 5.8e-17 90.9 116 50.9
ECA236G3625 Erigeron canadensis HOM05D005191 ORTHO05D006725 7.6e-17 90.5 121 47.9
Potri.006G065000 Populus trichocarpa HOM05D005191 ORTHO05D006725 7.6e-17 90.5 115 50.4
Duzib150G0407 Durio zibethinus HOM05D005191 ORTHO05D006725 1.0e-16 90.1 81 58.0
HanXRQChr05g0143851 Helianthus annuus HOM05D005191 ORTHO05D006725 1.0e-16 90.1 121 51.2
Peaxi162Scf00088g01225 Petunia axillaris HOM05D005191 ORTHO05D006725 1.0e-16 90.1 121 51.2
Potri.018G125171 Populus trichocarpa HOM05D005191 ORTHO05D006725 1.0e-16 90.1 115 48.7
MSTRG.26350 Avicennia marina HOM05D005191 ORTHO05D006725 1.3e-16 89.7 115 53.0
Ca_21665_v3 Cicer arietinum L. HOM05D005191 ORTHO05D006725 1.3e-16 89.7 115 50.4
Phvul.003G169500 Phaseolus vulgaris HOM05D005191 ORTHO05D006725 1.3e-16 89.7 115 50.4
Sed0022210 Sechium edule HOM05D005191 ORTHO05D006725 1.3e-16 89.7 115 50.4
Gohir.A08G088900 Gossypium hirsutum HOM05D005191 ORTHO05D006725 1.7e-16 89.4 115 52.2
Rhsim13G0106800 Rhododendron simsii HOM05D005191 ORTHO05D006725 1.7e-16 89.4 101 59.4
Nn2g12129 Nelumbo nucifera HOM05D005191 ORTHO05D006725 2.2e-16 89.0 116 50.9
Psat4g036440 Pisum sativum HOM05D005191 ORTHO05D006725 2.2e-16 89.0 115 49.6
Aqoxy7G02403 Aquilegia oxysepala HOM05D005191 ORTHO05D006725 2.9e-16 88.6 116 50.9
Glyma.17G110600 Glycine max HOM05D005191 ORTHO05D006725 2.9e-16 88.6 115 49.6
Potri.T124807 Populus trichocarpa HOM05D005191 ORTHO05D006725 2.9e-16 88.6 115 47.8
AL3G44790 Arabidopsis lyrata HOM05D005191 ORTHO05D006725 3.8e-16 88.2 115 52.2
AT2G11000 Arabidopsis thaliana HOM05D005191 ORTHO05D006725 3.8e-16 88.2 115 52.2
Glyma.13G160800 Glycine max HOM05D005191 ORTHO05D006725 3.8e-16 88.2 115 48.7
Ah.14g079340 Amaranthus hybridus HOM05D005191 ORTHO05D006725 4.9e-16 87.8 116 48.3
PSO017G2350 Papaver somniferum HOM05D005191 ORTHO05D006725 6.5e-16 87.4 122 49.2
AUR62013300 Chenopodium quinoa HOM05D005191 ORTHO05D006725 1.1e-15 86.7 117 50.4
PSO170G6846 Papaver somniferum HOM05D005191 ORTHO05D006725 1.1e-15 86.7 122 49.2
AUR62011184 Chenopodium quinoa HOM05D005191 ORTHO05D006725 1.4e-15 86.3 116 49.1
TPR.G7618 Trifolium pratense HOM05D005191 ORTHO05D006725 1.4e-15 86.3 115 48.7
MELO3C010304.2 Cucumis melo HOM05D005191 ORTHO05D006725 3.2e-15 85.1 64 65.6
DCAR_009327 Daucus carota HOM05D005191 ORTHO05D006725 3.2e-15 85.1 81 54.3
Medtr4g115450 Medicago truncatula HOM05D005191 ORTHO05D006725 3.2e-15 85.1 115 47.8
Carub.0003s2755 Capsella rubella HOM05D005191 ORTHO05D006725 4.2e-15 84.7 115 50.4
Zm00001eb192130 Zea mays HOM05D005191 ORTHO05D006725 4.2e-15 84.7 116 48.3
Lj4g0015768 Lotus japonicus HOM05D005191 ORTHO05D006725 5.5e-15 84.3 115 50.4
Hund26552 Selenicereus undatus HOM05D005191 ORTHO05D006725 7.9e-14 80.5 116 47.4
HPP92_010843 Vanilla planifolia HOM05D005191 ORTHO05D006725 7.9e-14 80.5 116 48.3
unitig_0.g2715 Utricularia gibba HOM05D005191 ORTHO05D006725 1.3e-13 79.7 107 49.5
EL10Ac8g18733 Beta vulgaris HOM05D005191 ORTHO05D006725 3.9e-13 78.2 103 47.6
Nitab4.5_0005159g0020 Nicotiana tabacum HOM05D005191 ORTHO05D006725 5.1e-13 77.8 52 73.1
Psat6g224720 Pisum sativum HOM05D005191 ORTHO05D006725 8.7e-13 77.0 115 46.1
CDE05G1862 Ceratophyllum demersum HOM05D005191 ORTHO05D006725 1.9e-12 75.9 96 47.9
TPR.G8947 Trifolium pratense HOM05D005191 ORTHO05D006725 3.3e-12 75.1 51 68.6
Os02g0803250 Oryza sativa ssp. japonica HOM05D005191 ORTHO05D006725 9.7e-12 73.6 82 48.8
ATR0800G098 Amborella trichopoda HOM05D005191 ORTHO05D006725 1.3e-11 73.2 112 42.9
COL.COLO4_23752 Corchorus olitorius HOM05D005191 ORTHO05D016248 5.3e-10 67.8 54 68.5
COL.COLO4_21409 Corchorus olitorius HOM05D005191 ORTHO05D016248 1.3e-08 63.2 53 66.0
Thhalv10022959m.g Eutrema salsugineum HOM05D005191 ORTHO05D006725 5.5e-07 57.8 38 71.1
SEGI_14008 Sequoiadendron giganteum HOM05D005191 ORTHO05D006725 1.2e-06 56.6 122 40.2


User provided reference genes

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