Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim05G0127900 Rhododendron simsii HOM05D004470 ORTHO05D005079 2.5e-40 168.3 83 100.0
vmacro01577 Vaccinium macrocarpon HOM05D004470 ORTHO05D005079 3.5e-18 94.7 58 77.6
CSS0034232 Camellia sinensis var. sinensis HOM05D004470 ORTHO05D005079 1.7e-17 92.4 51 88.2
Rhsim11G0097400 Rhododendron simsii HOM05D004470 ORTHO05D005079 2.2e-17 92.0 53 83.0
Sc16g0009110 Simmondsia chinensis HOM05D004470 ORTHO05D005079 3.8e-17 91.3 51 84.3
DCAR_002036 Daucus carota HOM05D004470 ORTHO05D005079 5.0e-17 90.9 68 64.7
SGA_v2.0_scaffold37G14596 Striga asiatica HOM05D004470 ORTHO05D005079 5.0e-17 90.9 51 80.4
Potri.005G011800 Populus trichocarpa HOM05D004470 ORTHO05D005079 6.5e-17 90.5 52 80.8
Potri.013G007600 Populus trichocarpa HOM05D004470 ORTHO05D005079 6.5e-17 90.5 52 80.8
Sabra05G0008600 Salix brachista HOM05D004470 ORTHO05D005079 6.5e-17 90.5 52 80.8
Sabra05G0020100 Salix brachista HOM05D004470 ORTHO05D005079 6.5e-17 90.5 52 80.8
Sabra13G0006500 Salix brachista HOM05D004470 ORTHO05D005079 6.5e-17 90.5 52 80.8
Phvul.007G202300 Phaseolus vulgaris HOM05D004470 ORTHO05D005079 8.5e-17 90.1 52 82.7
CANSAT56G4147 Cannabis sativa HOM05D004470 ORTHO05D005079 1.1e-16 89.7 51 80.4
Hma1.2p1_0052F.1_g030690 Hydrangea macrophylla HOM05D004470 ORTHO05D005079 1.1e-16 89.7 51 82.4
Lju926A3T37 Lonicera japonica HOM05D004470 ORTHO05D005079 1.1e-16 89.7 53 77.4
Nitab4.5_0001255g0050 Nicotiana tabacum HOM05D004470 ORTHO05D005079 1.1e-16 89.7 59 74.6
Atru.chr1.2932 Acer truncatum HOM05D004470 ORTHO05D005079 1.5e-16 89.4 51 82.4
CAN.G1076.31 Capsicum annuum HOM05D004470 ORTHO05D005079 1.5e-16 89.4 51 84.3
MBI18_g35544_MAGBIO Magnolia biondii HOM05D004470 ORTHO05D005079 1.5e-16 89.4 59 71.2
Peaxi162Scf00357g00829 Petunia axillaris HOM05D004470 ORTHO05D005079 1.5e-16 89.4 51 84.3
Sopen01g044200 Solanum pennellii HOM05D004470 ORTHO05D005079 1.5e-16 89.4 51 84.3
PGSC0003DMG400002761 Solanum tuberosum HOM05D004470 ORTHO05D005079 1.5e-16 89.4 51 84.3
ATR0693G181 Amborella trichopoda HOM05D004470 ORTHO05D005079 1.9e-16 89.0 51 84.3
Haze_04037 Corylus avellana HOM05D004470 ORTHO05D005079 1.9e-16 89.0 53 79.2
Hma1.2p1_0008F-1.1_g005470 Hydrangea macrophylla HOM05D004470 ORTHO05D005079 1.9e-16 89.0 51 82.4
CDE09G1304 Ceratophyllum demersum HOM05D004470 ORTHO05D005079 2.5e-16 88.6 51 82.4
Dinv30905 Davidia involucrata HOM05D004470 ORTHO05D005079 2.5e-16 88.6 51 82.4
Thecc.05G324600 Theobroma cacao HOM05D004470 ORTHO05D005079 2.5e-16 88.6 51 84.3
CiPaw.08G154600 Carya illinoinensis HOM05D004470 ORTHO05D005079 3.2e-16 88.2 53 79.2
Lalb_Chr02g0147721 Lupinus albus HOM05D004470 ORTHO05D005079 3.2e-16 88.2 52 78.8
Nitab4.5_0010074g0010 Nicotiana tabacum HOM05D004470 ORTHO05D005079 3.2e-16 88.2 51 82.4
SGA_v2.0_scaffold5G02899 Striga asiatica HOM05D004470 ORTHO05D005079 3.2e-16 88.2 51 78.4
ClCG03G017770 Citrullus lanatus HOM05D004470 ORTHO05D005079 4.2e-16 87.8 57 78.9
Nitab4.5_0001338g0040 Nicotiana tabacum HOM05D004470 ORTHO05D005079 4.2e-16 87.8 51 82.4
TWI34G1281 Tripterygium wilfordii HOM05D004470 ORTHO05D005079 4.2e-16 87.8 51 82.4
VMungo0720G0966 Vigna mungo HOM05D004470 ORTHO05D005079 4.2e-16 87.8 53 77.4
CANSAT54G2827 Cannabis sativa HOM05D004470 ORTHO05D005079 5.5e-16 87.4 53 77.4
Eucgr.H03299 Eucalyptus grandis HOM05D004470 ORTHO05D005079 5.5e-16 87.4 51 80.4
Glyma.20G096000 Glycine max HOM05D004470 ORTHO05D005079 5.5e-16 87.4 51 80.4
Medtr2g023920 Medicago truncatula HOM05D004470 ORTHO05D005079 5.5e-16 87.4 51 80.4
PGR031G2302 Punica granatum HOM05D004470 ORTHO05D005079 5.5e-16 87.4 51 80.4
TPR.G29395 Trifolium pratense HOM05D004470 ORTHO05D005079 5.5e-16 87.4 51 80.4
TPR.G34849 Trifolium pratense HOM05D004470 ORTHO05D005079 5.5e-16 87.4 51 80.4
CDE02G2719 Ceratophyllum demersum HOM05D004470 ORTHO05D005079 7.2e-16 87.0 51 80.4
Lj6g0017458 Lotus japonicus HOM05D004470 ORTHO05D005079 7.2e-16 87.0 51 80.4
QL03p015399 Quercus lobata HOM05D004470 ORTHO05D005079 7.2e-16 87.0 53 77.4
TWI63G0379 Tripterygium wilfordii HOM05D004470 ORTHO05D005079 7.2e-16 87.0 51 80.4
AL3G16550 Arabidopsis lyrata HOM05D004470 ORTHO05D005079 9.4e-16 86.7 51 76.5
AT3G05810 Arabidopsis thaliana HOM05D004470 ORTHO05D005079 9.4e-16 86.7 51 76.5
MSTRG.5145 Avicennia marina HOM05D004470 ORTHO05D005079 9.4e-16 86.7 51 76.5
Carub.0003s0517 Capsella rubella HOM05D004470 ORTHO05D005079 9.4e-16 86.7 51 76.5
CiPaw.07G030800 Carya illinoinensis HOM05D004470 ORTHO05D005079 9.4e-16 86.7 53 77.4
Duzib128G0232 Durio zibethinus HOM05D004470 ORTHO05D005079 9.4e-16 86.7 51 82.4
Prupe.3G062500 Prunus persica HOM05D004470 ORTHO05D005079 9.4e-16 86.7 51 80.4
Actinidia35512 Actinidia chinensis HOM05D004470 ORTHO05D005079 1.2e-15 86.3 51 78.4
CARHR080260 Cardamine hirsuta HOM05D004470 ORTHO05D005079 1.2e-15 86.3 51 74.5
Prupe.2G047800 Prunus persica HOM05D004470 ORTHO05D005079 1.2e-15 86.3 51 78.4
GSVIVG01031257001 Vitis vinifera HOM05D004470 ORTHO05D005079 1.2e-15 86.3 51 78.4
MELO3C015252.2 Cucumis melo HOM05D004470 ORTHO05D005079 1.6e-15 85.9 51 80.4
Eucgr.A00650 Eucalyptus grandis HOM05D004470 ORTHO05D005079 1.6e-15 85.9 51 76.5
TWI36G1558 Tripterygium wilfordii HOM05D004470 ORTHO05D005079 1.6e-15 85.9 51 80.4
unitig_37.g12917 Utricularia gibba HOM05D004470 ORTHO05D005079 1.6e-15 85.9 53 75.5
Aa31LG1G17020 Aethionema arabicum HOM05D004470 ORTHO05D005079 2.1e-15 85.5 50 80.0
BraA09t36207Z Brassica rapa HOM05D004470 ORTHO05D005079 2.1e-15 85.5 63 66.7
CsaV3_1G037920 Cucumis sativus L. HOM05D004470 ORTHO05D005079 2.1e-15 85.5 51 80.4
Gohir.A08G205100 Gossypium hirsutum HOM05D004470 ORTHO05D005079 2.1e-15 85.5 51 80.4
Gohir.D08G222200 Gossypium hirsutum HOM05D004470 ORTHO05D005079 2.1e-15 85.5 51 80.4
Gorai.004G236000 Gossypium raimondii HOM05D004470 ORTHO05D005079 2.1e-15 85.5 51 80.4
Nn4g25533 Nelumbo nucifera HOM05D004470 ORTHO05D005079 2.1e-15 85.5 51 78.4
Psat1g179040 Pisum sativum HOM05D004470 ORTHO05D005079 2.1e-15 85.5 51 78.4
THA.LOC104802774 Tarenaya hassleriana HOM05D004470 ORTHO05D005079 2.1e-15 85.5 51 78.4
arahy.Tifrunner.gnm1.ann1.3R4C35 Arachis hypogaea HOM05D004470 ORTHO05D005079 2.7e-15 85.1 51 78.4
arahy.Tifrunner.gnm1.ann1.44SN5D Arachis hypogaea HOM05D004470 ORTHO05D005079 2.7e-15 85.1 51 78.4
arahy.Tifrunner.gnm1.ann1.IGN13F Arachis hypogaea HOM05D004470 ORTHO05D005079 2.7e-15 85.1 51 78.4
BcaNung03672 Brassica carinata HOM05D004470 ORTHO05D005079 2.7e-15 85.1 63 66.7
BcaNung03915 Brassica carinata HOM05D004470 ORTHO05D005079 2.7e-15 85.1 63 66.7
A06p37040 Brassica napus HOM05D004470 ORTHO05D005079 2.7e-15 85.1 63 66.7
BraA06t26628Z Brassica rapa HOM05D004470 ORTHO05D005079 2.7e-15 85.1 63 66.7
COL.COLO4_05537 Corchorus olitorius HOM05D004470 ORTHO05D005079 2.7e-15 85.1 51 78.4
Glyma.10G146200 Glycine max HOM05D004470 ORTHO05D005079 2.7e-15 85.1 51 78.4
Sp2g21200 Schrenkiella parvula HOM05D004470 ORTHO05D005079 2.7e-15 85.1 63 66.7
THA.LOC104821881 Tarenaya hassleriana HOM05D004470 ORTHO05D005079 2.7e-15 85.1 51 78.4
TAR362G0763 Trochodendron aralioides HOM05D004470 ORTHO05D005079 2.7e-15 85.1 51 78.4
Aqoxy2G02663 Aquilegia oxysepala HOM05D004470 ORTHO05D005079 3.6e-15 84.7 51 78.4
BcaC04g23637 Brassica carinata HOM05D004470 ORTHO05D005079 3.6e-15 84.7 63 66.7
A09p05650 Brassica napus HOM05D004470 ORTHO05D005079 3.6e-15 84.7 63 66.7
C09p06260 Brassica napus HOM05D004470 ORTHO05D005079 3.6e-15 84.7 63 66.7
BolC9t53546H Brassica oleracea HOM05D004470 ORTHO05D005079 3.6e-15 84.7 63 66.7
Carub.0006s2445 Capsella rubella HOM05D004470 ORTHO05D005079 3.6e-15 84.7 52 75.0
Ciclev10002908m.g Citrus clementina HOM05D004470 ORTHO05D005079 3.6e-15 84.7 51 78.4
Nn3g21765 Nelumbo nucifera HOM05D004470 ORTHO05D005079 3.6e-15 84.7 51 78.4
SalBow5G0245 Salvia bowleyana HOM05D004470 ORTHO05D005079 3.6e-15 84.7 51 76.5
EL10Ac4g09488 Beta vulgaris HOM05D004470 ORTHO05D005079 4.7e-15 84.3 51 78.4
Sc18g0006160 Simmondsia chinensis HOM05D004470 ORTHO05D005079 4.7e-15 84.3 48 81.2
Ah.06g196140 Amaranthus hybridus HOM05D004470 ORTHO05D005079 6.1e-15 84.0 51 78.4
Ah.16g100620 Amaranthus hybridus HOM05D004470 ORTHO05D005079 6.1e-15 84.0 51 78.4
Cpa.g.sc48.175 Carica papaya HOM05D004470 ORTHO05D005079 8.0e-15 83.6 52 78.8
Migut.N00943 Erythranthe guttata HOM05D004470 ORTHO05D005079 8.0e-15 83.6 51 76.5
MD10G1090000 Malus domestica HOM05D004470 ORTHO05D005079 8.0e-15 83.6 51 74.5
Duzib106G0025 Durio zibethinus HOM05D004470 ORTHO05D005079 1.0e-14 83.2 48 83.3
Aa31LG5G16190 Aethionema arabicum HOM05D004470 ORTHO05D005079 1.4e-14 82.8 51 76.5
BcaB04g19711 Brassica carinata HOM05D004470 ORTHO05D005079 1.4e-14 82.8 63 65.1
Ca_10181_v3 Cicer arietinum L. HOM05D004470 ORTHO05D005079 1.4e-14 82.8 51 76.5
FvH4_6g32060 Fragaria vesca HOM05D004470 ORTHO05D005079 1.4e-14 82.8 50 76.0
Sed0027904 Sechium edule HOM05D004470 ORTHO05D005079 1.4e-14 82.8 51 80.4
AL6G38670 Arabidopsis lyrata HOM05D004470 ORTHO05D005079 1.8e-14 82.4 51 74.5
CARHR186760 Cardamine hirsuta HOM05D004470 ORTHO05D005079 1.8e-14 82.4 51 74.5
Cfa006723 Carpinus fangiana HOM05D004470 ORTHO05D005079 1.8e-14 82.4 62 69.4
AUR62000416 Chenopodium quinoa HOM05D004470 ORTHO05D005079 2.3e-14 82.0 51 76.5
Manes.08G110300 Manihot esculenta HOM05D004470 ORTHO05D005079 2.3e-14 82.0 51 76.5
BolC7t44679H Brassica oleracea HOM05D004470 ORTHO05D005079 3.0e-14 81.6 63 65.1
AUR62006764 Chenopodium quinoa HOM05D004470 ORTHO05D005079 3.0e-14 81.6 51 76.5
FAN02G2550 Fragaria x ananassa HOM05D004470 ORTHO05D005079 3.0e-14 81.6 49 77.6
FAN05G2322 Fragaria x ananassa HOM05D004470 ORTHO05D005079 3.0e-14 81.6 49 77.6
FAN14G0179 Fragaria x ananassa HOM05D004470 ORTHO05D005079 3.0e-14 81.6 49 77.6
Hund21865 Selenicereus undatus HOM05D004470 ORTHO05D005079 3.0e-14 81.6 51 74.5
Manes.09G177800 Manihot esculenta HOM05D004470 ORTHO05D005079 5.2e-14 80.9 51 74.5
FAN09G3660 Fragaria x ananassa HOM05D004470 ORTHO05D005079 6.8e-14 80.5 49 75.5
HPP92_002708 Vanilla planifolia HOM05D004470 ORTHO05D005079 6.8e-14 80.5 51 72.5
HPP92_027934 Vanilla planifolia HOM05D004470 ORTHO05D005079 6.8e-14 80.5 51 72.5
Sp3g04670 Schrenkiella parvula HOM05D004470 ORTHO05D005079 8.8e-14 80.1 49 77.6
Thhalv10021798m.g Eutrema salsugineum HOM05D004470 ORTHO05D005079 1.5e-13 79.3 48 77.1
Thhalv10026672m.g Eutrema salsugineum HOM05D004470 ORTHO05D005079 1.5e-13 79.3 48 77.1
MD07G1055000 Malus domestica HOM05D004470 ORTHO05D005079 1.5e-13 79.3 51 72.5
PSO339G4842 Papaver somniferum HOM05D004470 ORTHO05D005079 1.5e-13 79.3 51 74.5
Hund07308 Selenicereus undatus HOM05D004470 ORTHO05D005079 1.5e-13 79.3 52 75.0
RcHm_v2.0_Chr2g0139741 Rosa chinensis HOM05D004470 ORTHO05D005079 2.0e-13 79.0 49 75.5
PSO513G0108 Papaver somniferum HOM05D004470 ORTHO05D005079 2.6e-13 78.6 51 72.5
PSO541G1615 Papaver somniferum HOM05D004470 ORTHO05D005079 3.4e-13 78.2 51 76.5
PSO675G4687 Papaver somniferum HOM05D004470 ORTHO05D005079 3.4e-13 78.2 51 76.5
SEGI_31285 Sequoiadendron giganteum HOM05D004470 ORTHO05D005079 3.4e-13 78.2 61 65.6
DCAR_025290 Daucus carota HOM05D004470 ORTHO05D005079 4.4e-13 77.8 52 76.9
Cc02_g35220 Coffea canephora HOM05D004470 ORTHO05D005079 5.7e-13 77.4 51 74.5
HPP92_002665 Vanilla planifolia HOM05D004470 ORTHO05D005079 1.3e-12 76.3 51 70.6
Oeu000058.1 Olea europaea HOM05D004470 ORTHO05D005079 1.1e-11 73.2 52 63.5
Lsat_1_v5_gn_2_67201 Lactuca sativa HOM05D004470 ORTHO05D005079 7.0e-11 70.5 68 52.9
SHI42436 Sapria himalayana HOM05D004470 ORTHO05D005079 7.0e-11 70.5 51 62.7
AUR62036369 Chenopodium quinoa HOM05D004470 ORTHO05D005079 1.2e-10 69.7 50 68.0
HanXRQChr14g0445721 Helianthus annuus HOM05D004470 ORTHO05D005079 1.6e-10 69.3 69 50.7
Os01g0299400 Oryza sativa ssp. japonica HOM05D004470 ORTHO05D005079 1.6e-10 69.3 52 65.4
ECA238G3981 Erigeron canadensis HOM05D004470 ORTHO05D005079 2.7e-10 68.6 68 50.0
Os10g0150200 Oryza sativa ssp. japonica HOM05D004470 ORTHO05D005079 3.5e-10 68.2 53 64.2
Zm00001eb340410 Zea mays HOM05D004470 ORTHO05D005079 3.5e-10 68.2 52 65.4
Zm00001eb130040 Zea mays HOM05D004470 ORTHO05D005079 4.5e-10 67.8 52 63.5
HanXRQChr15g0471581 Helianthus annuus HOM05D004470 ORTHO05D005079 1.3e-09 66.2 48 62.5
MD15G1427600 Malus domestica HOM05D004470 ORTHO05D005079 1.1e-08 63.2 54 57.4
AUR62033672 Chenopodium quinoa HOM05D004470 ORTHO05D005079 1.9e-08 62.4 49 69.4
vmacro19787 Vaccinium macrocarpon HOM05D000003 ORTHO05D005079 2.5e-08 62.0 34 85.3
Mapoly0164s0021 Marchantia polymorpha HOM05D004470 ORTHO05D005079 1.6e-07 59.3 51 54.9
AagrBONN_evm.TU.Sc2ySwM_228.963 Anthoceros agrestis HOM05D004470 ORTHO05D005079 2.7e-07 58.5 64 45.3
C02p58610 Brassica napus HOM05D004470 ORTHO05D005079 8.0e-07 57.0 40 65.0
BcaC03g17832 Brassica carinata HOM05D004470 ORTHO05D005079 1.4e-06 56.2 38 65.8
BcaNung06220 Brassica carinata HOM05D004470 ORTHO05D005079 1.4e-06 56.2 38 65.8


User provided reference genes

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