Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim05G0126700 Rhododendron simsii HOM05D007435 ORTHO05D009338 7.7e-68 260.4 135 100.0
Actinidia02252 Actinidia chinensis HOM05D007435 ORTHO05D009338 3.0e-43 178.7 138 73.2
Actinidia21528 Actinidia chinensis HOM05D007435 ORTHO05D009338 5.6e-42 174.5 138 72.5
vmacro19756 Vaccinium macrocarpon HOM05D007435 ORTHO05D009338 9.2e-37 157.1 272 42.6
CSS0019859 Camellia sinensis var. sinensis HOM05D007435 ORTHO05D009338 3.1e-32 142.1 139 61.2
Dinv32059 Davidia involucrata HOM05D007435 ORTHO05D009338 3.1e-32 142.1 111 69.4
MD07G1027000 Malus domestica HOM05D007435 ORTHO05D009338 6.4e-30 134.4 130 59.2
Prupe.2G027100 Prunus persica HOM05D007435 ORTHO05D009338 8.4e-30 134.0 128 57.0
Dinv03572 Davidia involucrata HOM05D007435 ORTHO05D009338 5.4e-29 131.3 93 69.9
Dinv05039 Davidia involucrata HOM05D007435 ORTHO05D009338 5.4e-29 131.3 93 69.9
Cpa.g.sc197.17 Carica papaya HOM05D007435 ORTHO05D009338 6.6e-27 124.4 135 53.3
Thecc.10G004500 Theobroma cacao HOM05D007435 ORTHO05D009338 8.7e-27 124.0 134 55.2
RcHm_v2.0_Chr1g0319401 Rosa chinensis HOM05D007435 ORTHO05D009338 2.5e-26 122.5 129 55.8
MD02G1297000 Malus domestica HOM05D007435 ORTHO05D009338 5.6e-26 121.3 130 56.2
TAR065G0004 Trochodendron aralioides HOM05D007435 ORTHO05D009338 9.6e-26 120.6 127 52.8
FvH4_7g02100 Fragaria vesca HOM05D007435 ORTHO05D009338 2.1e-25 119.4 116 57.8
TAR369G0027 Trochodendron aralioides HOM05D007435 ORTHO05D009338 3.6e-25 118.6 122 54.1
Nitab4.5_0001775g0080 Nicotiana tabacum HOM05D007435 ORTHO05D009338 1.1e-24 117.1 108 62.0
FAN03G1772 Fragaria x ananassa HOM05D007435 ORTHO05D009338 2.4e-24 115.9 127 54.3
Solyc01g068190.3 Solanum lycopersicum HOM05D007435 ORTHO05D009338 4.0e-24 115.2 94 63.8
Sopen01g030130 Solanum pennellii HOM05D007435 ORTHO05D009338 4.0e-24 115.2 94 63.8
PGSC0003DMG401006753 Solanum tuberosum HOM05D007435 ORTHO05D009338 4.0e-24 115.2 94 63.8
Nitab4.5_0000316g0230 Nicotiana tabacum HOM05D002000 ORTHO05D002027 5.3e-24 114.8 109 60.6
Peaxi162Scf00087g00129 Petunia axillaris HOM05D007435 ORTHO05D009338 3.4e-23 112.1 152 49.3
TWI63G0886 Tripterygium wilfordii HOM05D007435 ORTHO05D009338 3.4e-23 112.1 143 51.0
COL.COLO4_19345 Corchorus olitorius HOM05D007435 ORTHO05D009338 4.5e-23 111.7 136 52.9
Lj3g0014273 Lotus japonicus HOM05D007435 ORTHO05D009338 5.8e-23 111.3 104 57.7
Manes.11G002100 Manihot esculenta HOM05D007435 ORTHO05D009338 9.9e-23 110.5 134 54.5
DCAR_009211 Daucus carota HOM05D007435 ORTHO05D009338 1.7e-22 109.8 94 60.6
CiPaw.13G009600 Carya illinoinensis HOM05D007435 ORTHO05D009338 2.2e-22 109.4 149 47.0
ECA248G3437 Erigeron canadensis HOM05D000002 ORTHO05D000001 2.9e-22 109.0 91 63.7
Lsat_1_v5_gn_1_100400 Lactuca sativa HOM05D007435 ORTHO05D009338 4.9e-22 108.2 112 52.7
HanXRQChr01g0020861 Helianthus annuus HOM05D007435 ORTHO05D009338 8.4e-22 107.5 110 53.6
Hma1.2p1_0269F.1_g107800 Hydrangea macrophylla HOM05D007435 ORTHO05D009338 1.1e-21 107.1 203 38.9
Haze_03106 Corylus avellana HOM05D007435 ORTHO05D009338 1.9e-21 106.3 145 46.9
Eucgr.G03266 Eucalyptus grandis HOM05D007435 ORTHO05D009338 2.4e-21 105.9 136 52.2
ClCG01G007560 Citrullus lanatus HOM05D007435 ORTHO05D009338 3.2e-21 105.5 121 52.9
AUR62026808 Chenopodium quinoa HOM05D007435 ORTHO05D009338 7.1e-21 104.4 115 54.8
Duzib128G0703 Durio zibethinus HOM05D007435 ORTHO05D009338 7.1e-21 104.4 113 57.5
Ah.10g030920 Amaranthus hybridus HOM05D007435 ORTHO05D009338 9.3e-21 104.0 132 50.0
Duzib114G0226 Durio zibethinus HOM05D007435 ORTHO05D009338 9.3e-21 104.0 147 47.6
Nn7g36439 Nelumbo nucifera HOM05D007435 ORTHO05D009338 9.3e-21 104.0 104 54.8
unitig_578.g16053 Utricularia gibba HOM05D007435 ORTHO05D009338 1.2e-20 103.6 137 48.9
MBI13_g04786_MAGBIO Magnolia biondii HOM05D007435 ORTHO05D009338 1.6e-20 103.2 91 62.6
SalBow6G1324 Salvia bowleyana HOM05D007435 ORTHO05D009338 2.1e-20 102.8 135 47.4
Cfa010840 Carpinus fangiana HOM05D007435 ORTHO05D009338 2.7e-20 102.4 145 45.5
SGA_v2.0_scaffold354G49740 Striga asiatica HOM05D007435 ORTHO05D009338 2.7e-20 102.4 141 47.5
MELO3C005141.2 Cucumis melo HOM05D007435 ORTHO05D009338 7.9e-20 100.9 122 51.6
Sc10g0004150 Simmondsia chinensis HOM05D007435 ORTHO05D009338 1.8e-19 99.8 133 46.6
Aa31LG2G18760 Aethionema arabicum HOM05D007435 ORTHO05D009338 2.3e-19 99.4 93 58.1
AUR62037244 Chenopodium quinoa HOM05D007435 ORTHO05D009338 3.0e-19 99.0 115 51.3
Migut.N01821 Erythranthe guttata HOM05D007435 ORTHO05D009338 3.0e-19 99.0 143 41.3
PSO339G5565 Papaver somniferum HOM05D007435 ORTHO05D009338 3.0e-19 99.0 88 59.1
Sed0015818 Sechium edule HOM05D007435 ORTHO05D009338 3.0e-19 99.0 120 50.8
CsaV3_5G024570 Cucumis sativus L. HOM05D007435 ORTHO05D009338 5.1e-19 98.2 122 50.8
CANSAT80G0490 Cannabis sativa HOM05D007435 ORTHO05D009338 6.7e-19 97.8 146 45.2
Psat5g213320 Pisum sativum HOM05D007435 ORTHO05D009338 8.7e-19 97.4 108 51.9
PGR031G0502 Punica granatum HOM05D007435 ORTHO05D009338 9.6e-18 94.0 92 58.7
Lalb_Chr25g0282731 Lupinus albus HOM05D007435 ORTHO05D009338 2.8e-17 92.4 161 39.1
AT4G31560 Arabidopsis thaliana HOM05D007435 ORTHO05D009338 4.8e-17 91.7 92 54.3
Medtr3g023160 Medicago truncatula HOM05D007435 ORTHO05D009338 4.8e-17 91.7 111 51.4
AL343U10010 Arabidopsis lyrata HOM05D007435 ORTHO05D009338 6.2e-17 91.3 118 48.3
Carub.0007s0901 Capsella rubella HOM05D007435 ORTHO05D009338 6.2e-17 91.3 92 54.3
CARHR239440 Cardamine hirsuta HOM05D007435 ORTHO05D009338 1.4e-16 90.1 92 53.3
CDE08G0963 Ceratophyllum demersum HOM05D000584 ORTHO05D009338 3.1e-16 89.0 122 45.1
QL04p012434 Quercus lobata HOM05D007435 ORTHO05D009338 4.0e-16 88.6 159 40.9
QL04p013057 Quercus lobata HOM05D007435 ORTHO05D009338 5.3e-16 88.2 159 42.1
ATR0006G035 Amborella trichopoda HOM05D007435 ORTHO05D009338 2.0e-15 86.3 134 45.5
A01p06670 Brassica napus HOM05D005366 ORTHO05D006323 2.6e-15 85.9 94 51.1
Gohir.D10G251200 Gossypium hirsutum HOM05D007435 ORTHO05D009338 2.6e-15 85.9 154 40.3
Gorai.011G291600 Gossypium raimondii HOM05D007435 ORTHO05D009338 2.6e-15 85.9 154 40.3
C07p58750 Brassica napus HOM05D007435 ORTHO05D009338 3.4e-15 85.5 93 52.7
BolC7t46323H Brassica oleracea HOM05D007435 ORTHO05D009338 3.4e-15 85.5 93 52.7
Glyma.11G149600 Glycine max HOM05D007435 ORTHO05D009338 4.5e-15 85.1 143 39.2
BraA01t00625Z Brassica rapa HOM05D005366 ORTHO05D006323 7.6e-15 84.3 93 50.5
Thhalv10026511m.g Eutrema salsugineum HOM05D007435 ORTHO05D009338 9.9e-15 84.0 92 50.0
BcaNung01514 Brassica carinata HOM05D007435 ORTHO05D009338 1.3e-14 83.6 93 50.5
arahy.Tifrunner.gnm1.ann1.4Y0UDN Arachis hypogaea HOM05D007435 ORTHO05D009338 1.7e-14 83.2 96 49.0
Gohir.A10G239300 Gossypium hirsutum HOM05D007435 ORTHO05D009338 1.7e-14 83.2 162 41.4
BcaNung04129 Brassica carinata HOM05D007435 ORTHO05D009338 2.2e-14 82.8 135 40.7
A03p60860 Brassica napus HOM05D007435 ORTHO05D009338 2.9e-14 82.4 93 49.5
BraA03t15122Z Brassica rapa HOM05D007435 ORTHO05D009338 2.9e-14 82.4 93 49.5
C01p07440 Brassica napus HOM05D007435 ORTHO05D009338 3.8e-14 82.0 95 50.5
BolC1t00726H Brassica oleracea HOM05D007435 ORTHO05D009338 3.8e-14 82.0 95 50.5
CDE06G1029 Ceratophyllum demersum HOM05D007435 ORTHO05D009338 8.4e-14 80.9 108 44.4
BcaC09g51937 Brassica carinata HOM05D007435 ORTHO05D009338 1.1e-13 80.5 94 50.0
Sp7g29390 Schrenkiella parvula HOM05D007435 ORTHO05D009338 1.1e-13 80.5 141 41.1
Potri.001G022500 Populus trichocarpa HOM05D007435 ORTHO05D009338 1.9e-13 79.7 136 42.6
THA.LOC104826709 Tarenaya hassleriana HOM05D007435 ORTHO05D009338 3.2e-13 79.0 93 47.3
arahy.Tifrunner.gnm1.ann1.KRJM02 Arachis hypogaea HOM05D007435 ORTHO05D009338 7.1e-13 77.8 100 46.0
Ciclev10032994m.g Citrus clementina HOM05D007435 ORTHO05D009338 2.7e-12 75.9 151 39.7
Atru.chr11.2511 Acer truncatum HOM05D007435 ORTHO05D009338 3.0e-11 72.4 146 41.8
HPP92_025000 Vanilla planifolia HOM05D007435 ORTHO05D009338 3.0e-11 72.4 111 45.0
Aqoxy1G00332 Aquilegia oxysepala HOM05D007435 ORTHO05D009338 1.9e-10 69.7 76 52.6
Hund13323 Selenicereus undatus HOM05D000185 ORTHO05D000105 1.9e-10 69.7 80 51.2
Zm00001eb363190 Zea mays HOM05D007435 ORTHO05D009338 9.6e-10 67.4 139 38.8
VMungo1080G0635 Vigna mungo HOM05D007435 ORTHO05D009338 1.6e-09 66.6 142 33.8
Haze_19805 Corylus avellana HOM05D007435 ORTHO05D009338 2.1e-09 66.2 94 47.9
Phvul.005G033400 Phaseolus vulgaris HOM05D007435 ORTHO05D009338 2.1e-09 66.2 119 39.5
Sabra01G0016900 Salix brachista HOM05D007435 ORTHO05D009338 2.1e-09 66.2 54 57.4
Ca_27018_v3 Cicer arietinum L. HOM05D007435 ORTHO05D009338 8.2e-09 64.3 97 44.3
Os01g0940600 Oryza sativa ssp. japonica HOM05D007435 ORTHO05D009338 8.2e-09 64.3 95 44.2
Zm00001eb141550 Zea mays HOM05D007435 ORTHO05D009338 6.9e-08 61.2 111 41.4
PGSC0003DMG402006753 Solanum tuberosum HOM05D007435 ORTHO05D009338 3.4e-07 58.9 44 63.6
Oeu003913.1 Olea europaea HOM05D007435 ORTHO05D009338 1.3e-06 57.0 86 41.9


User provided reference genes

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