Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim05G0119100 Rhododendron simsii HOM05D004930 ORTHO05D006531 4.2e-210 734.6 403 100.0
CSS0021494 Camellia sinensis var. sinensis HOM05D004930 ORTHO05D006531 3.5e-156 555.4 401 74.6
PGSC0003DMG400023754 Solanum tuberosum HOM05D004930 ORTHO05D006531 2.3e-155 552.7 413 70.5
Solyc01g104310.3 Solanum lycopersicum HOM05D004930 ORTHO05D006531 1.5e-154 550.1 413 69.5
TAR628G0980 Trochodendron aralioides HOM05D004930 ORTHO05D006531 1.5e-154 550.1 398 73.4
Sopen01g046750 Solanum pennellii HOM05D004930 ORTHO05D006531 1.9e-154 549.7 413 69.7
TAR376G0678 Trochodendron aralioides HOM05D004930 ORTHO05D006531 2.1e-153 546.2 398 71.9
CiPaw.06G148500 Carya illinoinensis HOM05D004930 ORTHO05D006531 5.2e-152 541.6 402 70.4
Nitab4.5_0011195g0040 Nicotiana tabacum HOM05D004930 ORTHO05D006531 8.6e-147 524.2 432 66.9
GSVIVG01022999001 Vitis vinifera HOM05D004930 ORTHO05D006531 1.5e-146 523.5 402 68.7
FAN13G1313 Fragaria x ananassa HOM05D004930 ORTHO05D006531 3.3e-146 522.3 405 67.4
Lj6g0009653 Lotus japonicus HOM05D004930 ORTHO05D006531 5.6e-146 521.5 338 76.0
arahy.Tifrunner.gnm1.ann1.PLNC5S Arachis hypogaea HOM05D004930 ORTHO05D006531 9.5e-146 520.8 406 69.7
Cc02_g22360 Coffea canephora HOM05D004930 ORTHO05D006531 9.5e-146 520.8 407 69.8
Ca_00086_v3 Cicer arietinum L. HOM05D004930 ORTHO05D006531 1.2e-145 520.4 372 71.0
Cfa005536 Carpinus fangiana HOM05D004930 ORTHO05D006531 2.1e-145 519.6 401 68.1
FvH4_5g29680 Fragaria vesca HOM05D004930 ORTHO05D006531 2.8e-145 519.2 339 75.2
Psat1g224280 Pisum sativum HOM05D004930 ORTHO05D006531 4.7e-145 518.5 375 69.6
RcHm_v2.0_Chr7g0223001 Rosa chinensis HOM05D004930 ORTHO05D006531 3.1e-144 515.8 338 75.1
SalBow6G0918 Salvia bowleyana HOM05D004930 ORTHO05D006531 3.1e-144 515.8 410 66.8
SalBow6G1869 Salvia bowleyana HOM05D004930 ORTHO05D006531 3.1e-144 515.8 410 66.8
Nn1g08650 Nelumbo nucifera HOM05D004930 ORTHO05D006531 4.0e-144 515.4 400 67.5
Cpa.g.sc2.5 Carica papaya HOM05D004930 ORTHO05D006531 5.2e-144 515.0 415 66.7
VMungo0540G0757 Vigna mungo HOM05D004930 ORTHO05D006531 1.2e-143 513.8 372 71.0
FAN04G2298 Fragaria x ananassa HOM05D004930 ORTHO05D006531 1.5e-143 513.5 417 64.7
Potri.003G020800 Populus trichocarpa HOM05D004930 ORTHO05D006531 1.5e-143 513.5 400 66.5
MD15G1421100 Malus domestica HOM05D004930 ORTHO05D006531 3.4e-143 512.3 340 75.3
TPR.G2103 Trifolium pratense HOM05D004930 ORTHO05D006531 3.4e-143 512.3 345 72.2
CsaV3_3G018910 Cucumis sativus L. HOM05D004930 ORTHO05D006531 4.4e-143 511.9 393 68.4
Eucgr.G00613 Eucalyptus grandis HOM05D004930 ORTHO05D006531 7.5e-143 511.1 426 66.4
arahy.Tifrunner.gnm1.ann1.3M9FW6 Arachis hypogaea HOM05D004930 ORTHO05D006531 9.8e-143 510.8 404 68.1
TWI59G0754 Tripterygium wilfordii HOM05D004930 ORTHO05D006531 1.3e-142 510.4 416 65.9
MELO3C019485.2 Cucumis melo HOM05D004930 ORTHO05D006531 1.7e-142 510.0 401 67.8
Glyma.08G184900 Glycine max HOM05D004930 ORTHO05D006531 2.2e-142 509.6 400 66.8
FAN18G2930 Fragaria x ananassa HOM05D004930 ORTHO05D006531 2.9e-142 509.2 385 68.3
Glyma.15G047800 Glycine max HOM05D004930 ORTHO05D006531 2.9e-142 509.2 373 69.4
Phvul.006G213000 Phaseolus vulgaris HOM05D004930 ORTHO05D006531 4.9e-142 508.4 381 69.6
SGA_v2.0_scaffold145G36067 Striga asiatica HOM05D004930 ORTHO05D006531 4.9e-142 508.4 339 76.4
Duzib248G0906 Durio zibethinus HOM05D004930 ORTHO05D006531 6.4e-142 508.1 361 69.0
Potri.001G209500 Populus trichocarpa HOM05D004930 ORTHO05D006531 6.4e-142 508.1 407 65.4
Medtr2g007650 Medicago truncatula HOM05D004930 ORTHO05D006531 5.4e-141 505.0 341 72.1
CANSAT11G0917 Cannabis sativa HOM05D004930 ORTHO05D006531 7.0e-141 504.6 337 72.7
Ciclev10001315m.g Citrus clementina HOM05D004930 ORTHO05D006531 1.6e-140 503.4 412 63.6
HanXRQChr11g0333531 Helianthus annuus HOM05D004930 ORTHO05D006531 2.0e-140 503.1 359 72.1
Lj5A251T70 Lonicera japonica HOM05D004930 ORTHO05D006531 2.0e-140 503.1 400 72.2
Lsat_1_v5_gn_7_77761 Lactuca sativa HOM05D004930 ORTHO05D006531 2.7e-140 502.7 403 66.5
Thecc.02G040000 Theobroma cacao HOM05D004930 ORTHO05D006531 2.7e-140 502.7 409 67.5
Lalb_Chr18g0060861 Lupinus albus HOM05D004930 ORTHO05D006531 6.0e-140 501.5 400 64.5
Atru.chr6.830 Acer truncatum HOM05D004930 ORTHO05D006531 7.8e-140 501.1 411 66.7
Duzib052G0674 Durio zibethinus HOM05D004930 ORTHO05D006531 1.0e-139 500.7 408 64.0
COL.COLO4_17882 Corchorus olitorius HOM05D004930 ORTHO05D006531 1.3e-139 500.4 339 72.3
ClCG05G009760 Citrullus lanatus HOM05D004930 ORTHO05D006531 3.9e-139 498.8 339 72.0
Gorai.002G001200 Gossypium raimondii HOM05D004930 ORTHO05D006531 3.9e-139 498.8 338 71.3
PGR042G0956 Punica granatum HOM05D004930 ORTHO05D006531 5.0e-139 498.4 431 61.9
Gohir.A01G001000 Gossypium hirsutum HOM05D004930 ORTHO05D006531 6.6e-139 498.0 338 71.0
Gohir.D01G000700 Gossypium hirsutum HOM05D004930 ORTHO05D006531 6.6e-139 498.0 338 71.0
DCAR_001819 Daucus carota HOM05D004930 ORTHO05D006531 1.5e-138 496.9 403 66.0
ECA236G4599 Erigeron canadensis HOM05D004930 ORTHO05D006531 1.1e-136 490.7 407 70.8
Aqoxy5G02422 Aquilegia oxysepala HOM05D004930 ORTHO05D006531 2.3e-136 489.6 360 73.6
CAN.G1577.7 Capsicum annuum HOM05D004930 ORTHO05D006531 1.3e-134 483.8 272 86.0
Actinidia39050 Actinidia chinensis HOM05D004930 ORTHO05D006531 8.3e-134 481.1 356 68.5
QL02p098488 Quercus lobata HOM05D004930 ORTHO05D006531 8.3e-134 481.1 519 53.8
EL10Ac6g15372 Beta vulgaris HOM05D004930 ORTHO05D006531 4.1e-133 478.8 338 69.8
CDE05G0822 Ceratophyllum demersum HOM05D004930 ORTHO05D006531 9.2e-133 477.6 342 67.3
THA.LOC104810264 Tarenaya hassleriana HOM05D004930 ORTHO05D006531 3.9e-131 472.2 339 67.0
Sp1g28730 Schrenkiella parvula HOM05D004930 ORTHO05D006531 2.5e-130 469.5 339 67.3
Lalb_Chr20g0123411 Lupinus albus HOM05D004930 ORTHO05D006531 4.3e-130 468.8 339 67.6
BcaB04g17919 Brassica carinata HOM05D004930 ORTHO05D006531 1.6e-129 466.8 339 66.1
AL1G47670 Arabidopsis lyrata HOM05D004930 ORTHO05D006531 2.1e-129 466.5 374 63.1
CARHR032640 Cardamine hirsuta HOM05D004930 ORTHO05D006531 4.7e-129 465.3 339 66.7
Carub.0001s3147 Capsella rubella HOM05D004930 ORTHO05D006531 8.1e-129 464.5 376 62.8
A08p08610 Brassica napus HOM05D004930 ORTHO05D006531 1.1e-128 464.2 339 65.8
BraA08t32874Z Brassica rapa HOM05D004930 ORTHO05D006531 1.1e-128 464.2 339 65.8
Peaxi162Scf00011g00243 Petunia axillaris HOM05D004930 ORTHO05D006531 2.3e-128 463.0 406 63.8
Aa31LG6G7800 Aethionema arabicum HOM05D004930 ORTHO05D006531 5.2e-128 461.8 339 65.2
AT1G33270 Arabidopsis thaliana HOM05D004930 ORTHO05D006531 5.2e-128 461.8 374 62.6
ATR0684G093 Amborella trichopoda HOM05D004930 ORTHO05D006531 8.9e-128 461.1 338 68.6
Gorai.004G003500 Gossypium raimondii HOM05D004930 ORTHO05D006531 1.2e-127 460.7 339 65.2
BcaC07g37556 Brassica carinata HOM05D004930 ORTHO05D006531 2.0e-127 459.9 339 64.9
Gohir.D08G010200 Gossypium hirsutum HOM05D004930 ORTHO05D006531 2.6e-127 459.5 339 65.5
Gohir.A08G000149 Gossypium hirsutum HOM05D004930 ORTHO05D006531 1.3e-126 457.2 336 65.2
PSO170G4712 Papaver somniferum HOM05D004930 ORTHO05D006531 4.9e-126 455.3 384 62.5
Hund04330 Selenicereus undatus HOM05D004930 ORTHO05D006531 4.9e-126 455.3 338 67.2
Nitab4.5_0002245g0180 Nicotiana tabacum HOM05D004930 ORTHO05D006531 1.9e-125 453.4 409 61.6
BraA09t38838Z Brassica rapa HOM05D004930 ORTHO05D006531 9.2e-125 451.1 340 65.6
Os11g0546300 Oryza sativa ssp. japonica HOM05D004930 ORTHO05D006531 1.2e-124 450.7 339 64.9
A09p32980 Brassica napus HOM05D004930 ORTHO05D006531 2.7e-124 449.5 340 65.3
BcaC08g43878 Brassica carinata HOM05D004930 ORTHO05D006531 6.0e-124 448.4 340 65.0
BolC6t36417H Brassica oleracea HOM05D004930 ORTHO05D006531 6.0e-124 448.4 340 65.0
C06p12670 Brassica napus HOM05D004930 ORTHO05D006531 1.3e-123 447.2 340 64.4
Sabra03G0012100 Salix brachista HOM05D004930 ORTHO05D006531 1.3e-123 447.2 534 50.4
BcaB07g32965 Brassica carinata HOM05D004930 ORTHO05D006531 3.3e-122 442.6 340 63.8
Zm00001eb113740 Zea mays HOM05D004930 ORTHO05D006531 2.1e-121 439.9 339 64.0
Dinv19356 Davidia involucrata HOM05D004930 ORTHO05D006531 1.4e-120 437.2 328 71.6
vmacro19901 Vaccinium macrocarpon HOM05D004930 ORTHO05D006531 1.4e-120 437.2 585 49.2
Sc07g0007240 Simmondsia chinensis HOM05D004930 ORTHO05D006531 4.0e-120 435.6 340 65.6
SEGI_13232 Sequoiadendron giganteum HOM05D004930 ORTHO05D006531 1.2e-119 434.1 336 63.1
MBI03_g28294_MAGBIO Magnolia biondii HOM05D004930 ORTHO05D006531 2.9e-118 429.5 272 75.7
Ah.03g147430 Amaranthus hybridus HOM05D004930 ORTHO05D006531 7.1e-117 424.9 404 56.4
vmacro01769 Vaccinium macrocarpon HOM05D004930 ORTHO05D006531 4.3e-114 415.6 402 57.2
Sabra01G0161800 Salix brachista HOM05D004930 ORTHO05D006531 2.0e-111 406.8 460 53.5
BolC8t47898H Brassica oleracea HOM05D004930 ORTHO05D006531 9.9e-111 404.4 386 54.1
Thhalv10007991m.g Eutrema salsugineum HOM05D004930 ORTHO05D006531 1.9e-109 400.2 298 65.1
Rhsim11G0130300 Rhododendron simsii HOM05D004930 ORTHO05D006531 6.0e-108 395.2 214 86.0
AUR62017811 Chenopodium quinoa HOM05D004930 ORTHO05D006531 7.9e-108 394.8 288 68.8
Oeu012747.1 Olea europaea HOM05D004930 ORTHO05D006531 1.0e-107 394.4 215 86.0
Ca_29925_v3 Cicer arietinum L. HOM05D004930 ORTHO05D006531 2.5e-106 389.8 213 85.0
THA.LOC104813074 Tarenaya hassleriana HOM05D004930 ORTHO05D006531 8.1e-105 384.8 298 64.1
SMO145G0200 Selaginella moellendorffii HOM05D004930 ORTHO05D006531 2.0e-103 380.2 266 67.7
AagrBONN_evm.TU.Sc2ySwM_344.3941 Anthoceros agrestis HOM05D004930 ORTHO05D006531 2.3e-99 366.7 262 67.6
Mapoly0101s0012 Marchantia polymorpha HOM05D004930 ORTHO05D006531 4.5e-95 352.4 258 66.7
HPP92_002187 Vanilla planifolia HOM05D004930 ORTHO05D006531 1.3e-94 350.9 336 56.8
Pp3c11_20720 Physcomitrium patens HOM05D004930 ORTHO05D006531 6.5e-94 348.6 268 63.8
HanXRQChr02g0058791 Helianthus annuus HOM05D004930 ORTHO05D006531 1.3e-89 334.3 196 79.6
Prupe.1G566300 Prunus persica HOM05D004930 ORTHO05D006531 5.9e-87 325.5 305 61.6
Manes.07G014400 Manihot esculenta HOM05D004930 ORTHO05D006531 3.2e-85 319.7 237 71.3
CSS0024235 Camellia sinensis var. sinensis HOM05D004930 ORTHO05D006531 9.3e-85 318.2 408 50.2
Sed0026856 Sechium edule HOM05D004930 ORTHO05D006531 2.1e-84 317.0 297 64.3
AUR62003501 Chenopodium quinoa HOM05D004930 ORTHO05D006531 5.1e-83 312.4 214 71.0
SMO139G0053 Selaginella moellendorffii HOM05D004930 ORTHO05D006531 1.2e-79 301.2 217 66.4
AagrBONN_evm.TU.Sc2ySwM_344.3947 Anthoceros agrestis HOM05D000001 ORTHO05D000003 2.0e-79 300.4 257 58.0
CBR_g22336 Chara braunii HOM05D004930 ORTHO05D006531 2.8e-73 280.0 225 61.8
Haze_01635 Corylus avellana HOM05D004930 ORTHO05D006531 4.7e-68 262.7 260 59.6
Cre12.g530950 Chlamydomonas reinhardtii HOM05D004930 ORTHO05D006531 1.4e-43 181.4 254 40.6
Cre03.g195500 Chlamydomonas reinhardtii HOM05D004930 ORTHO05D006531 2.8e-41 173.7 265 37.4
MCO11G494 Micromonas commoda HOM05D004930 ORTHO05D006531 8.6e-30 135.6 286 33.9
PRCOL_00005484 Prasinoderma coloniale HOM05D007321 ORTHO05D009244 1.7e-25 121.3 179 41.3
Migut.N01037 Erythranthe guttata HOM05D004930 ORTHO05D006531 1.9e-24 117.9 194 53.1
AUR62003500 Chenopodium quinoa HOM05D004930 ORTHO05D006531 7.0e-24 115.9 205 40.5
CARHR054090 Cardamine hirsuta HOM05D004930 ORTHO05D006531 6.0e-23 112.8 88 65.9
FvH4_3g29702 Fragaria vesca HOM05D004930 ORTHO05D011275 4.7e-20 103.2 125 48.8
FAN11G3733 Fragaria x ananassa HOM05D004930 ORTHO05D006531 6.8e-19 99.4 59 74.6
FvH4_3g12743 Fragaria vesca HOM05D004930 ORTHO05D006531 1.2e-18 98.6 59 76.3
FAN06G5097 Fragaria x ananassa HOM05D004930 ORTHO05D006531 3.4e-18 97.1 59 74.6
FAN25G1134 Fragaria x ananassa HOM05D004930 ORTHO05D006531 3.4e-18 97.1 59 74.6
FAN01G0209 Fragaria x ananassa HOM05D004930 ORTHO05D006531 2.2e-17 94.4 59 69.5
FAN12G1704 Fragaria x ananassa HOM05D004930 ORTHO05D006531 2.2e-17 94.4 59 69.5
FAN17G1951 Fragaria x ananassa HOM05D004930 ORTHO05D006531 2.2e-17 94.4 59 69.5
FAN17G0369 Fragaria x ananassa HOM05D004930 ORTHO05D011275 6.4e-17 92.8 59 67.8
FAN17G1425 Fragaria x ananassa HOM05D004930 ORTHO05D006531 8.3e-17 92.4 59 67.8
FvH4_4g16550 Fragaria vesca HOM05D004930 ORTHO05D011275 1.4e-16 91.7 59 66.1
MCO09G146 Micromonas commoda HOM05D004930 ORTHO05D270306 1.7e-14 84.7 235 27.7
PRCOL_00003693 Prasinoderma coloniale HOM05D004930 ORTHO05D006531 3.0e-14 84.0 170 35.3
Ca_20167_v3 Cicer arietinum L. HOM05D004930 ORTHO05D000002 5.1e-14 83.2 49 83.7
Cre09.g400219 Chlamydomonas reinhardtii HOM05D004930 ORTHO05D006531 2.8e-12 77.4 166 31.3
MCO01G237 Micromonas commoda HOM05D004930 ORTHO05D006531 4.7e-12 76.6 166 30.7
CBR_g45217 Chara braunii HOM05D004930 ORTHO05D028745 1.8e-11 74.7 168 31.5
Cre26.g756847 Chlamydomonas reinhardtii HOM05D004930 ORTHO05D028745 2.9e-09 67.4 172 32.6
Atru.chr3.79 Acer truncatum HOM05D037071 ORTHO05D010002 3.0e-06 57.4 28 89.3


User provided reference genes

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