Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim05G0117800 Rhododendron simsii HOM05D000314 ORTHO05D000189 6.3e-69 263.8 121 100.0
Rhsim03G0094300 Rhododendron simsii HOM05D000314 ORTHO05D000189 7.5e-22 107.5 62 80.6
vmacro07274 Vaccinium macrocarpon HOM05D000314 ORTHO05D000189 6.6e-18 94.4 62 74.2
CSS0048558 Camellia sinensis var. sinensis HOM05D000314 ORTHO05D000189 2.0e-14 82.8 63 65.1
Lj5g0006764 Lotus japonicus HOM05D000314 ORTHO05D000189 8.3e-13 77.4 62 54.8
Lalb_Chr02g0150901 Lupinus albus HOM05D000314 ORTHO05D000189 8.3e-13 77.4 62 59.7
Ciclev10017624m.g Citrus clementina HOM05D000314 ORTHO05D000189 1.9e-12 76.3 62 59.7
CANSAT56G0913 Cannabis sativa HOM05D000314 ORTHO05D000189 3.2e-12 75.5 63 57.1
MSTRG.9028 Avicennia marina HOM05D000314 ORTHO05D000189 7.1e-12 74.3 62 56.5
Sc09g0005040 Simmondsia chinensis HOM05D000314 ORTHO05D000189 7.1e-12 74.3 65 55.4
TWI15G1032 Tripterygium wilfordii HOM05D000314 ORTHO05D000189 7.1e-12 74.3 61 55.7
Hma1.2p1_0153F.1_g067810 Hydrangea macrophylla HOM05D000314 ORTHO05D000189 9.2e-12 73.9 62 56.5
Manes.10G064400 Manihot esculenta HOM05D000314 ORTHO05D000189 1.2e-11 73.6 62 56.5
Sed0027605 Sechium edule HOM05D000314 ORTHO05D000189 1.2e-11 73.6 63 55.6
Glyma.10G195200 Glycine max HOM05D000314 ORTHO05D000189 1.6e-11 73.2 62 54.8
Actinidia34064 Actinidia chinensis HOM05D000314 ORTHO05D000189 2.7e-11 72.4 55 63.6
Atru.chr12.1086 Acer truncatum HOM05D000314 ORTHO05D000189 3.5e-11 72.0 62 54.8
Eucgr.J00303 Eucalyptus grandis HOM05D000314 ORTHO05D000189 3.5e-11 72.0 62 54.8
Duzib128G0192 Durio zibethinus HOM05D000314 ORTHO05D000189 4.6e-11 71.6 62 53.2
Lj2C36T8 Lonicera japonica HOM05D000314 ORTHO05D000189 4.6e-11 71.6 64 53.1
MD02G1258300 Malus domestica HOM05D000314 ORTHO05D000189 4.6e-11 71.6 62 56.5
TAR633G1197 Trochodendron aralioides HOM05D000314 ORTHO05D000189 4.6e-11 71.6 63 57.1
RcHm_v2.0_Chr1g0332071 Rosa chinensis HOM05D000314 ORTHO05D000189 6.0e-11 71.2 62 53.2
VMungo0720G1777 Vigna mungo HOM05D000314 ORTHO05D000189 6.0e-11 71.2 62 53.2
Cfa010510 Carpinus fangiana HOM05D000314 ORTHO05D000189 7.8e-11 70.9 62 56.5
CiPaw.13G044900 Carya illinoinensis HOM05D000314 ORTHO05D000189 7.8e-11 70.9 62 56.5
QL04p048596 Quercus lobata HOM05D000314 ORTHO05D000189 7.8e-11 70.9 61 54.1
Ca_10427_v3 Cicer arietinum L. HOM05D000314 ORTHO05D000189 1.0e-10 70.5 60 53.3
TWI38G1164 Tripterygium wilfordii HOM05D000314 ORTHO05D000189 1.0e-10 70.5 61 52.5
MD12G1042900 Malus domestica HOM05D000314 ORTHO05D000189 1.3e-10 70.1 65 53.8
Migut.F00833 Erythranthe guttata HOM05D000314 ORTHO05D000189 1.7e-10 69.7 62 51.6
Manes.07G084800 Manihot esculenta HOM05D000314 ORTHO05D000189 1.7e-10 69.7 62 54.8
Phvul.007G137300 Phaseolus vulgaris HOM05D000314 ORTHO05D000189 1.7e-10 69.7 62 51.6
Thecc.10G118800 Theobroma cacao HOM05D000314 ORTHO05D000189 1.7e-10 69.7 62 50.0
GSVIVG01034614001 Vitis vinifera HOM05D000314 ORTHO05D000189 1.7e-10 69.7 64 51.6
Gohir.A13G003200 Gossypium hirsutum HOM05D000314 ORTHO05D000189 2.3e-10 69.3 62 51.6
MD07G1062500 Malus domestica HOM05D000314 ORTHO05D000189 2.3e-10 69.3 62 54.8
PGR044G1159 Punica granatum HOM05D000314 ORTHO05D000189 2.3e-10 69.3 64 51.6
Gorai.013G003000 Gossypium raimondii HOM05D000314 ORTHO05D000189 3.0e-10 68.9 62 51.6
Nn2g14366 Nelumbo nucifera HOM05D000314 ORTHO05D000189 3.0e-10 68.9 62 56.5
Oeu033269.1 Olea europaea HOM05D000314 ORTHO05D000189 3.0e-10 68.9 62 51.6
Sabra08G0009800 Salix brachista HOM05D000314 ORTHO05D000189 3.0e-10 68.9 63 55.6
FvH4_1g27790 Fragaria vesca HOM05D000314 ORTHO05D000189 3.9e-10 68.6 62 53.2
FvH4_7g05400 Fragaria vesca HOM05D000314 ORTHO05D000189 3.9e-10 68.6 62 53.2
FAN01G0019 Fragaria x ananassa HOM05D000314 ORTHO05D000189 3.9e-10 68.6 62 53.2
FAN06G2563 Fragaria x ananassa HOM05D000314 ORTHO05D000189 3.9e-10 68.6 62 53.2
FAN10G1075 Fragaria x ananassa HOM05D000314 ORTHO05D000189 3.9e-10 68.6 62 53.2
Gohir.D13G003100 Gossypium hirsutum HOM05D000314 ORTHO05D000189 3.9e-10 68.6 62 51.6
Aqoxy1G00619 Aquilegia oxysepala HOM05D000314 ORTHO05D000189 5.1e-10 68.2 63 52.4
Duzib106G1525 Durio zibethinus HOM05D000314 ORTHO05D000189 5.1e-10 68.2 60 51.7
Nitab4.5_0001781g0160 Nicotiana tabacum HOM05D000314 ORTHO05D000189 5.1e-10 68.2 62 53.2
Potri.010G243700 Populus trichocarpa HOM05D000314 ORTHO05D000189 5.1e-10 68.2 63 54.0
Glyma.02G193800 Glycine max HOM05D000314 ORTHO05D000189 8.6e-10 67.4 65 49.2
Potri.008G016100 Populus trichocarpa HOM05D000314 ORTHO05D000189 8.6e-10 67.4 63 54.0
CAN.G143.51 Capsicum annuum HOM05D000314 ORTHO05D000189 1.1e-09 67.0 62 51.6
Dinv01279 Davidia involucrata HOM05D000314 ORTHO05D000189 1.1e-09 67.0 62 56.5
Prupe.2G073600 Prunus persica HOM05D000314 ORTHO05D000189 1.1e-09 67.0 62 54.8
PGSC0003DMG400001987 Solanum tuberosum HOM05D000314 ORTHO05D000189 1.1e-09 67.0 64 51.6
MSTRG.27549 Avicennia marina HOM05D000314 ORTHO05D000189 1.5e-09 66.6 62 51.6
ECA238G2867 Erigeron canadensis HOM05D000314 ORTHO05D000189 1.5e-09 66.6 62 54.8
Nitab4.5_0003986g0010 Nicotiana tabacum HOM05D000314 ORTHO05D000189 1.5e-09 66.6 62 51.6
unitig_46.g18647 Utricularia gibba HOM05D000314 ORTHO05D000189 1.9e-09 66.2 114 35.1
Ah.06g191180 Amaranthus hybridus HOM05D000314 ORTHO05D000189 2.5e-09 65.9 68 47.1
Solyc11g006430.1 Solanum lycopersicum HOM05D000314 ORTHO05D000189 2.5e-09 65.9 65 50.8
Sopen11g002330 Solanum pennellii HOM05D000314 ORTHO05D000189 2.5e-09 65.9 65 50.8
Cc02_g09300 Coffea canephora HOM05D000314 ORTHO05D000189 4.3e-09 65.1 63 49.2
CsaV3_6G004420 Cucumis sativus L. HOM05D000314 ORTHO05D000189 4.3e-09 65.1 64 50.0
Sabra10G0190500 Salix brachista HOM05D000314 ORTHO05D000189 4.3e-09 65.1 63 52.4
Cfa020060 Carpinus fangiana HOM05D000314 ORTHO05D000189 5.6e-09 64.7 64 48.4
Haze_20138 Corylus avellana HOM05D000314 ORTHO05D000189 5.6e-09 64.7 66 50.0
MBI11_g18532_MAGBIO Magnolia biondii HOM05D000314 ORTHO05D000189 5.6e-09 64.7 66 45.5
Prupe.7G092000 Prunus persica HOM05D000314 ORTHO05D000189 5.6e-09 64.7 66 45.5
Glyma.10G083400 Glycine max HOM05D000314 ORTHO05D000189 9.5e-09 63.9 64 46.9
Nn6g34622 Nelumbo nucifera HOM05D000314 ORTHO05D000189 9.5e-09 63.9 68 51.5
ClCG08G008430 Citrullus lanatus HOM05D000314 ORTHO05D000189 1.2e-08 63.5 63 50.8
Lsat_1_v5_gn_2_106200 Lactuca sativa HOM05D000314 ORTHO05D000189 1.2e-08 63.5 62 53.2
EL10Ac4g08733 Beta vulgaris HOM05D000314 ORTHO05D000189 1.6e-08 63.2 62 48.4
AUR62014276 Chenopodium quinoa HOM05D000314 ORTHO05D000189 1.6e-08 63.2 65 44.6
Peaxi162Scf00120g01319 Petunia axillaris HOM05D000314 ORTHO05D000189 1.6e-08 63.2 62 51.6
RcHm_v2.0_Chr3g0476541 Rosa chinensis HOM05D000314 ORTHO05D000189 1.6e-08 63.2 65 49.2
CANSAT64G0778 Cannabis sativa HOM05D000314 ORTHO05D000189 2.1e-08 62.8 65 49.2
CANSAT64G2604 Cannabis sativa HOM05D000314 ORTHO05D000189 2.1e-08 62.8 65 49.2
Atru.chr8.1315 Acer truncatum HOM05D000314 ORTHO05D000189 2.8e-08 62.4 66 50.0
FvH4_6g20660 Fragaria vesca HOM05D000314 ORTHO05D000189 2.8e-08 62.4 65 49.2
Hma1.2p1_0391F.1_g142710 Hydrangea macrophylla HOM05D000314 ORTHO05D000189 2.8e-08 62.4 62 45.2
Medtr1g090400 Medicago truncatula HOM05D000314 ORTHO05D000189 3.6e-08 62.0 60 46.7
Oeu040011.1 Olea europaea HOM05D000314 ORTHO05D000189 3.6e-08 62.0 63 52.4
QL07p027303 Quercus lobata HOM05D000314 ORTHO05D000189 6.2e-08 61.2 62 45.2
GSVIVG01022568001 Vitis vinifera HOM05D000314 ORTHO05D000189 6.2e-08 61.2 68 47.1
MELO3C019913.2 Cucumis melo HOM05D000314 ORTHO05D000189 8.1e-08 60.8 61 49.2
Sed0008248 Sechium edule HOM05D000314 ORTHO05D000189 8.1e-08 60.8 67 43.3
Cpa.g.sc33.131 Carica papaya HOM05D000314 ORTHO05D000189 1.1e-07 60.5 63 49.2
vmacro22391 Vaccinium macrocarpon HOM05D000314 ORTHO05D000189 2.3e-07 59.3 65 46.2
Oeu063090.1 Olea europaea HOM05D000314 ORTHO05D000189 3.1e-07 58.9 62 48.4
Potri.006G201300 Populus trichocarpa HOM05D000314 ORTHO05D000189 3.1e-07 58.9 64 48.4
Sabra06G0155000 Salix brachista HOM05D000314 ORTHO05D000189 3.1e-07 58.9 63 49.2
TPR.G10269 Trifolium pratense HOM05D000314 ORTHO05D000189 3.1e-07 58.9 60 46.7
PGR004G1486 Punica granatum HOM05D000314 ORTHO05D000189 4.0e-07 58.5 60 41.7
arahy.Tifrunner.gnm1.ann1.45A2QZ Arachis hypogaea HOM05D000314 ORTHO05D000189 5.2e-07 58.2 68 39.7
MD14G1041800 Malus domestica HOM05D000314 ORTHO05D000189 5.2e-07 58.2 65 46.2
PSO339G5838 Papaver somniferum HOM05D000314 ORTHO05D000189 5.2e-07 58.2 63 47.6
Actinidia06679 Actinidia chinensis HOM05D000314 ORTHO05D000189 6.8e-07 57.8 51 54.9
COL.COLO4_29526 Corchorus olitorius HOM05D000314 ORTHO05D000189 6.8e-07 57.8 66 47.0
DCAR_018986 Daucus carota HOM05D000314 ORTHO05D000189 6.8e-07 57.8 63 52.4
Rhsim03G0058800 Rhododendron simsii HOM05D000314 ORTHO05D000189 6.8e-07 57.8 64 46.9
Duzib093G0889 Durio zibethinus HOM05D000314 ORTHO05D000189 8.9e-07 57.4 65 47.7
Nitab4.5_0000220g0040 Nicotiana tabacum HOM05D000314 ORTHO05D000189 8.9e-07 57.4 62 45.2
Nitab4.5_0000692g0030 Nicotiana tabacum HOM05D000314 ORTHO05D000189 8.9e-07 57.4 61 50.8
PSO384G5032 Papaver somniferum HOM05D000314 ORTHO05D000189 8.9e-07 57.4 63 47.6
Duzib106G0017 Durio zibethinus HOM05D000314 ORTHO05D000189 1.2e-06 57.0 44 56.8
VMungo1383G1603 Vigna mungo HOM05D000314 ORTHO05D000189 1.2e-06 57.0 63 46.0
ClCG10G018170 Citrullus lanatus HOM05D000314 ORTHO05D000189 1.5e-06 56.6 66 43.9
HanXRQChr08g0229851 Helianthus annuus HOM05D000314 ORTHO05D000189 1.5e-06 56.6 61 45.9
Lsat_1_v5_gn_0_26101 Lactuca sativa HOM05D000041 ORTHO05D000452 1.5e-06 56.6 60 48.3
Lsat_1_v5_gn_5_54140 Lactuca sativa HOM05D000041 ORTHO05D000452 1.5e-06 56.6 60 48.3
Peaxi162Scf00074g00633 Petunia axillaris HOM05D000314 ORTHO05D000189 1.5e-06 56.6 42 59.5
Phvul.001G197100 Phaseolus vulgaris HOM05D000314 ORTHO05D000189 1.5e-06 56.6 63 46.0
Duzib128G0020 Durio zibethinus HOM05D000314 ORTHO05D000189 2.0e-06 56.2 62 48.4
Thecc.05G090200 Theobroma cacao HOM05D000314 ORTHO05D000189 2.0e-06 56.2 61 49.2
MELO3C009556.2 Cucumis melo HOM05D000314 ORTHO05D000189 2.6e-06 55.8 78 41.0
CsaV3_3G038140 Cucumis sativus L. HOM05D000314 ORTHO05D000189 2.6e-06 55.8 67 41.8
Duzib093G1236 Durio zibethinus HOM05D000314 ORTHO05D000189 2.6e-06 55.8 60 48.3
AagrBONN_evm.TU.Sc2ySwM_362.469 Anthoceros agrestis HOM05D000314 ORTHO05D000189 3.4e-06 55.5 66 42.4
CANSAT32G0001 Cannabis sativa HOM05D000314 ORTHO05D000189 3.4e-06 55.5 85 38.8
CiPaw.10G019400 Carya illinoinensis HOM05D000314 ORTHO05D000189 3.4e-06 55.5 64 45.3
MELO3C009478.2 Cucumis melo HOM05D000314 ORTHO05D000189 3.4e-06 55.5 59 45.8
CsaV3_3G037340 Cucumis sativus L. HOM05D000314 ORTHO05D000189 3.4e-06 55.5 59 45.8
Duzib093G0927 Durio zibethinus HOM05D000314 ORTHO05D000189 3.4e-06 55.5 66 48.5
Migut.J01027 Erythranthe guttata HOM05D000314 ORTHO05D000189 3.4e-06 55.5 61 47.5
Glyma.03G203500 Glycine max HOM05D000314 ORTHO05D000189 3.4e-06 55.5 60 45.0
Sabra06G0163700 Salix brachista HOM05D000314 ORTHO05D000189 3.4e-06 55.5 61 45.9
HPP92_019714 Vanilla planifolia HOM05D000314 ORTHO05D000189 3.4e-06 55.5 58 48.3
ATR0697G057 Amborella trichopoda HOM05D000314 ORTHO05D000189 4.4e-06 55.1 80 38.8
Aqoxy2G01155 Aquilegia oxysepala HOM05D000314 ORTHO05D000189 4.4e-06 55.1 62 46.8
CDE04G0058 Ceratophyllum demersum HOM05D000314 ORTHO05D000189 4.4e-06 55.1 60 43.3
Lsat_1_v5_gn_3_11340 Lactuca sativa HOM05D000314 ORTHO05D000189 4.4e-06 55.1 42 59.5
Lalb_Chr21g0312771 Lupinus albus HOM05D000314 ORTHO05D000189 4.4e-06 55.1 60 45.0
SEGI_36546 Sequoiadendron giganteum HOM05D000314 ORTHO05D000189 4.4e-06 55.1 63 42.9
TAR369G0892 Trochodendron aralioides HOM05D000314 ORTHO05D000189 4.4e-06 55.1 64 46.9
CDE02G4610 Ceratophyllum demersum HOM05D000314 ORTHO05D000189 5.8e-06 54.7 67 46.3
Ciclev10011852m.g Citrus clementina HOM05D000314 ORTHO05D000189 5.8e-06 54.7 62 48.4
Ciclev10012922m.g Citrus clementina HOM05D000314 ORTHO05D000189 5.8e-06 54.7 64 46.9
Lalb_Chr20g0111691 Lupinus albus HOM05D000314 ORTHO05D000189 5.8e-06 54.7 64 45.3
Potri.006G212700 Populus trichocarpa HOM05D000314 ORTHO05D000189 5.8e-06 54.7 61 45.9
PGSC0003DMG400008952 Solanum tuberosum HOM05D000314 ORTHO05D000189 5.8e-06 54.7 44 54.5
Thecc.05G107800 Theobroma cacao HOM05D000314 ORTHO05D000189 5.8e-06 54.7 44 59.1
AL6G44700 Arabidopsis lyrata HOM05D000314 ORTHO05D000189 7.6e-06 54.3 67 41.8
CSS0032078 Camellia sinensis var. sinensis HOM05D000314 ORTHO05D000189 7.6e-06 54.3 64 45.3
CiPaw.10G010400 Carya illinoinensis HOM05D000314 ORTHO05D000189 7.6e-06 54.3 63 49.2
Cc08_g16300 Coffea canephora HOM05D000314 ORTHO05D000189 7.6e-06 54.3 44 52.3
Haze_19620 Corylus avellana HOM05D000314 ORTHO05D000189 7.6e-06 54.3 63 47.6
MD14G1023700 Malus domestica HOM05D000314 ORTHO05D000189 7.6e-06 54.3 60 50.0
Oeu056545.1 Olea europaea HOM05D000314 ORTHO05D000189 7.6e-06 54.3 40 55.0
unitig_60.g25598 Utricularia gibba HOM05D000314 ORTHO05D000189 7.6e-06 54.3 46 54.3
CARHR086330 Cardamine hirsuta HOM05D000314 ORTHO05D000189 9.9e-06 53.9 39 53.8
Gohir.A09G133100 Gossypium hirsutum HOM05D000314 ORTHO05D000189 9.9e-06 53.9 62 45.2
Gohir.A09G139600 Gossypium hirsutum HOM05D000314 ORTHO05D000189 9.9e-06 53.9 61 49.2
Gohir.D04G092700 Gossypium hirsutum HOM05D000314 ORTHO05D000189 9.9e-06 53.9 61 45.9
Gohir.D09G129400 Gossypium hirsutum HOM05D000314 ORTHO05D000189 9.9e-06 53.9 62 45.2
Gohir.D09G135000 Gossypium hirsutum HOM05D000314 ORTHO05D000189 9.9e-06 53.9 61 49.2
Gorai.006G148100 Gossypium raimondii HOM05D000314 ORTHO05D000189 9.9e-06 53.9 62 45.2
Gorai.006G154900 Gossypium raimondii HOM05D000314 ORTHO05D000189 9.9e-06 53.9 61 49.2
SMO340G0312 Selaginella moellendorffii HOM05D000314 ORTHO05D000189 9.9e-06 53.9 42 50.0
SGA_v2.0_scaffold31G12909 Striga asiatica HOM05D000314 ORTHO05D000189 9.9e-06 53.9 60 45.0
TPR.G3373 Trifolium pratense HOM05D000314 ORTHO05D000189 9.9e-06 53.9 46 52.2


User provided reference genes

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