Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim05G0112400 Rhododendron simsii HOM05D011579 ORTHO05D011435 1.6e-136 489.6 278 100.0
Rhsim06G0111000 Rhododendron simsii HOM05D000107 ORTHO05D011435 1.9e-81 306.6 266 72.9
Rhsim01G0119600 Rhododendron simsii HOM05D011579 ORTHO05D011435 1.6e-72 276.9 152 84.9
Rhsim05G0108800 Rhododendron simsii HOM05D000808 ORTHO05D000863 2.4e-55 219.9 166 61.4
Rhsim05G0087700 Rhododendron simsii HOM05D011579 ORTHO05D011435 1.7e-48 197.2 157 58.6
Rhsim02G0150600 Rhododendron simsii HOM05D011579 ORTHO05D011435 8.2e-48 194.9 198 55.1
Rhsim10G0076500 Rhododendron simsii HOM05D003738 ORTHO05D011435 3.5e-46 189.5 94 89.4
Rhsim03G0082400 Rhododendron simsii HOM05D000874 ORTHO05D001049 1.0e-45 188.0 95 89.5
RhsimUnG0164400 Rhododendron simsii HOM05D011579 ORTHO05D011435 8.5e-45 184.9 154 55.8
Rhsim08G0127400 Rhododendron simsii HOM05D011579 ORTHO05D011435 1.5e-41 174.1 162 52.5
vmacro16050 Vaccinium macrocarpon HOM05D000176 ORTHO05D000106 5.0e-37 159.1 176 44.9
Rhsim04G0154500 Rhododendron simsii HOM05D011579 ORTHO05D011435 1.1e-36 157.9 111 64.0
vmacro03392 Vaccinium macrocarpon HOM05D000176 ORTHO05D000106 2.7e-35 153.3 171 45.0
Rhsim10G0126300 Rhododendron simsii HOM05D011579 ORTHO05D011435 4.7e-35 152.5 167 46.1
RhsimUnG0076900 Rhododendron simsii HOM05D011579 ORTHO05D011435 1.8e-34 150.6 93 67.7
Rhsim01G0135900 Rhododendron simsii HOM05D000030 ORTHO05D000009 6.3e-32 142.1 184 42.4
Rhsim09G0078700 Rhododendron simsii HOM05D011579 ORTHO05D011435 5.4e-31 139.0 151 45.7
Hma1.2p1_0293F.1_g116320 Hydrangea macrophylla HOM05D000176 ORTHO05D000106 1.0e-29 134.8 147 45.6
Hma1.2p1_0690F.1_g203890 Hydrangea macrophylla HOM05D000176 ORTHO05D000106 3.8e-29 132.9 147 44.2
RcHm_v2.0_Chr1g0332031 Rosa chinensis HOM05D000176 ORTHO05D000106 1.2e-27 127.9 194 35.1
Hma1.2p1_1995F.1_g310310 Hydrangea macrophylla HOM05D000176 ORTHO05D000106 6.8e-26 122.1 119 49.6
FvH4_6g36961 Fragaria vesca HOM05D000176 ORTHO05D000106 8.9e-26 121.7 194 35.6
FAN24G0751 Fragaria x ananassa HOM05D000176 ORTHO05D002183 7.5e-25 118.6 141 42.6
RcHm_v2.0_Chr5g0043391 Rosa chinensis HOM05D000176 ORTHO05D000106 1.7e-24 117.5 146 41.8
Rhsim01G0121300 Rhododendron simsii HOM05D011579 ORTHO05D011435 6.3e-24 115.5 153 39.9
Rhsim09G0063300 Rhododendron simsii HOM05D000030 ORTHO05D000031 2.4e-23 113.6 110 46.4
Hma1.2p1_0913F.1_g236030 Hydrangea macrophylla HOM05D000176 ORTHO05D000106 5.4e-23 112.5 119 47.1
Lju1034C2T5 Lonicera japonica HOM05D000176 ORTHO05D000106 5.0e-21 105.9 159 37.1
Lj9C281T4 Lonicera japonica HOM05D000176 ORTHO05D000106 8.6e-21 105.1 179 34.6
MD17G1028300 Malus domestica HOM05D000176 ORTHO05D000106 1.1e-20 104.8 122 41.8
Hma1.2p1_0111F.1_g053640 Hydrangea macrophylla HOM05D000176 ORTHO05D000106 1.5e-20 104.4 95 49.5
Lj5A683T12 Lonicera japonica HOM05D000176 ORTHO05D000106 3.3e-20 103.2 168 36.3
Rhsim07G0148300 Rhododendron simsii HOM05D011579 ORTHO05D011435 3.3e-20 103.2 105 44.8
Lj3C888T3 Lonicera japonica HOM05D000176 ORTHO05D000106 4.3e-20 102.8 178 33.7
Lju1680C2T1 Lonicera japonica HOM05D000176 ORTHO05D000106 4.3e-20 102.8 145 37.9
Lj9C183T0 Lonicera japonica HOM05D000176 ORTHO05D002183 1.2e-19 101.3 137 38.7
CSS0007507 Camellia sinensis var. sinensis HOM05D000176 ORTHO05D000106 2.8e-19 100.1 168 32.1
CSS0048717 Camellia sinensis var. sinensis HOM05D000176 ORTHO05D011435 2.8e-19 100.1 168 32.7
Lj7A410T9 Lonicera japonica HOM05D000176 ORTHO05D000106 2.8e-19 100.1 157 34.4
CSS0039650 Camellia sinensis var. sinensis HOM05D000176 ORTHO05D000106 3.6e-19 99.8 168 32.7
Lj7C245G13 Lonicera japonica HOM05D000176 ORTHO05D000106 4.7e-19 99.4 123 40.7
Lj6C514G1 Lonicera japonica HOM05D000176 ORTHO05D000106 6.1e-19 99.0 195 32.3
Lju279A7T18 Lonicera japonica HOM05D000176 ORTHO05D000106 1.4e-18 97.8 160 36.2
Lj6C562T7 Lonicera japonica HOM05D000176 ORTHO05D000106 2.3e-18 97.1 145 34.5
Lj5C240T11 Lonicera japonica HOM05D000176 ORTHO05D000106 5.2e-18 95.9 160 35.6
Lj5C659T2 Lonicera japonica HOM05D000176 ORTHO05D000106 5.2e-18 95.9 117 40.2
Lj5A265T32 Lonicera japonica HOM05D000176 ORTHO05D000106 8.9e-18 95.1 205 29.8
Lj9C343T5 Lonicera japonica HOM05D000176 ORTHO05D000106 1.2e-17 94.7 117 40.2
Lj6A472T10 Lonicera japonica HOM05D000176 ORTHO05D000106 1.5e-17 94.4 121 39.7
MD06G1202700 Malus domestica HOM05D000115 ORTHO05D003511 1.5e-17 94.4 194 29.9
CSS0009167 Camellia sinensis var. sinensis HOM05D000176 ORTHO05D000106 2.6e-17 93.6 168 31.5
Lj1A172T27 Lonicera japonica HOM05D000176 ORTHO05D000106 2.6e-17 93.6 168 33.3
Lju188C3T12 Lonicera japonica HOM05D000176 ORTHO05D000106 2.6e-17 93.6 119 36.1
CSS0001401 Camellia sinensis var. sinensis HOM05D000176 ORTHO05D011435 4.4e-17 92.8 168 31.5
Lj3A82T20 Lonicera japonica HOM05D000176 ORTHO05D000106 4.4e-17 92.8 168 32.7
Lj3C84G3 Lonicera japonica HOM05D000176 ORTHO05D000106 5.8e-17 92.4 167 32.9
Lj8C418G4 Lonicera japonica HOM05D000176 ORTHO05D000106 7.5e-17 92.0 118 39.8
Lj2C466G13 Lonicera japonica HOM05D000176 ORTHO05D000106 9.8e-17 91.7 119 39.5
Lj1A491T22 Lonicera japonica HOM05D000176 ORTHO05D000106 1.7e-16 90.9 118 39.0
Lj3C54G11 Lonicera japonica HOM05D000176 ORTHO05D000106 1.7e-16 90.9 150 33.3
Lj5C702T0 Lonicera japonica HOM05D000176 ORTHO05D000106 1.7e-16 90.9 118 39.0
Lj2A866T16 Lonicera japonica HOM05D000176 ORTHO05D000106 2.2e-16 90.5 139 38.8
Lju188C6G6 Lonicera japonica HOM05D000176 ORTHO05D000106 2.2e-16 90.5 170 32.4
Lj8C518G1 Lonicera japonica HOM05D000176 ORTHO05D000106 2.9e-16 90.1 206 28.2
Lj2C1107G22 Lonicera japonica HOM05D000176 ORTHO05D000106 4.9e-16 89.4 119 38.7
CSS0023765 Camellia sinensis var. sinensis HOM05D014304 ORTHO05D011435 6.4e-16 89.0 66 59.1
Lj4C121T9 Lonicera japonica HOM05D000176 ORTHO05D000106 6.4e-16 89.0 118 38.1
CSS0036407 Camellia sinensis var. sinensis HOM05D014304 ORTHO05D011435 1.1e-15 88.2 66 59.1
CSS0048540 Camellia sinensis var. sinensis HOM05D014304 ORTHO05D011435 1.1e-15 88.2 66 59.1
Lj1C595G6 Lonicera japonica HOM05D000176 ORTHO05D000106 1.4e-15 87.8 190 31.6
Rhsim07G0168900 Rhododendron simsii HOM05D011579 ORTHO05D011435 2.4e-15 87.0 67 92.5
CSS0008763 Camellia sinensis var. sinensis HOM05D014304 ORTHO05D011435 3.2e-15 86.7 66 57.6
CSS0020110 Camellia sinensis var. sinensis HOM05D014304 ORTHO05D011435 3.2e-15 86.7 66 57.6
CSS0030884 Camellia sinensis var. sinensis HOM05D014304 ORTHO05D011435 3.2e-15 86.7 66 57.6
CSS0045734 Camellia sinensis var. sinensis HOM05D014304 ORTHO05D011435 3.2e-15 86.7 66 57.6
CSS0049005 Camellia sinensis var. sinensis HOM05D014304 ORTHO05D011435 3.2e-15 86.7 66 57.6
Lj8A506T8 Lonicera japonica HOM05D000176 ORTHO05D000106 3.2e-15 86.7 146 32.2
PSO017G5879 Papaver somniferum HOM05D000176 ORTHO05D000106 3.2e-15 86.7 194 30.9
CSS0048564 Camellia sinensis var. sinensis HOM05D000176 ORTHO05D011435 4.1e-15 86.3 158 33.5
Lj3A160G33 Lonicera japonica HOM05D000176 ORTHO05D000106 7.0e-15 85.5 151 33.1
Lj5C312G4 Lonicera japonica HOM05D000176 ORTHO05D000106 7.0e-15 85.5 113 38.9
Lj9C207T4 Lonicera japonica HOM05D000176 ORTHO05D000106 1.2e-14 84.7 119 32.8
PSO675G7692 Papaver somniferum HOM05D000176 ORTHO05D000106 1.2e-14 84.7 131 38.2
CSS0021615 Camellia sinensis var. sinensis HOM05D014304 ORTHO05D011435 1.6e-14 84.3 66 54.5
Lj4A736T37 Lonicera japonica HOM05D000176 ORTHO05D000106 1.6e-14 84.3 115 38.3
Lju124P4T4 Lonicera japonica HOM05D000176 ORTHO05D011435 1.6e-14 84.3 107 42.1
Lj8A112T24 Lonicera japonica HOM05D000176 ORTHO05D000106 2.0e-14 84.0 142 30.3
Lj5A194T79 Lonicera japonica HOM05D000176 ORTHO05D000106 4.6e-14 82.8 117 35.9
Rhsim09G0063800 Rhododendron simsii HOM05D011579 ORTHO05D011435 4.6e-14 82.8 97 40.2
CSS0002224 Camellia sinensis var. sinensis HOM05D014304 ORTHO05D011435 2.3e-13 80.5 66 56.1
FvH4_5g13891 Fragaria vesca HOM05D000176 ORTHO05D000106 3.9e-13 79.7 141 33.3
Lj9C449G12 Lonicera japonica HOM05D000176 ORTHO05D000106 1.9e-12 77.4 102 38.2
EL10Ac3g06792 Beta vulgaris HOM05D000176 ORTHO05D000106 3.3e-12 76.6 117 33.3
EL10Ac7g17342 Beta vulgaris HOM05D000176 ORTHO05D000106 3.3e-12 76.6 117 33.3
EL10Ac7g17344 Beta vulgaris HOM05D000176 ORTHO05D000106 3.3e-12 76.6 117 33.3
EL10Ac2g02712 Beta vulgaris HOM05D000176 ORTHO05D000106 4.3e-12 76.3 117 33.3
EL10Ac9g21153 Beta vulgaris HOM05D000176 ORTHO05D000106 7.3e-12 75.5 122 34.4
EL10Ac5g12113 Beta vulgaris HOM05D000176 ORTHO05D002183 1.2e-11 74.7 117 32.5
EL10Ac3g06558 Beta vulgaris HOM05D000176 ORTHO05D000106 1.6e-11 74.3 122 34.4
EL10Ac6g14114 Beta vulgaris HOM05D000176 ORTHO05D000106 1.6e-11 74.3 117 33.3
Lj6P836T32 Lonicera japonica HOM05D000176 ORTHO05D000106 1.6e-11 74.3 105 37.1
EL10Ac4g08651 Beta vulgaris HOM05D000176 ORTHO05D000106 2.8e-11 73.6 122 35.2
EL10Ac4g08649 Beta vulgaris HOM05D000176 ORTHO05D000106 3.6e-11 73.2 119 35.3
Lju470C8G1 Lonicera japonica HOM05D000176 ORTHO05D000106 3.6e-11 73.2 77 45.5
Lj2C845T4 Lonicera japonica HOM05D000176 ORTHO05D000106 3.1e-10 70.1 108 35.2
Lj1C479G4 Lonicera japonica HOM05D000176 ORTHO05D000106 5.2e-10 69.3 90 33.3
Lju124C17G5 Lonicera japonica HOM05D000176 ORTHO05D000106 5.2e-10 69.3 115 33.0
TWI73G0304 Tripterygium wilfordii HOM05D000176 ORTHO05D000106 6.8e-10 68.9 125 38.4
Aqoxy2G02523 Aquilegia oxysepala HOM05D000176 ORTHO05D000106 2.0e-09 67.4 117 32.5
Ah.01g016400 Amaranthus hybridus HOM05D000176 ORTHO05D000106 4.4e-09 66.2 112 33.9
Aqoxy3G01710 Aquilegia oxysepala HOM05D000176 ORTHO05D011435 4.4e-09 66.2 95 38.9
Lj7P460T35 Lonicera japonica HOM05D000176 ORTHO05D000106 4.4e-09 66.2 101 34.7
Ah.01g016230 Amaranthus hybridus HOM05D000176 ORTHO05D000106 5.8e-09 65.9 113 33.6
Ah.01g016330 Amaranthus hybridus HOM05D018751 ORTHO05D012560 5.8e-09 65.9 113 33.6
Lj4C678T2 Lonicera japonica HOM05D000176 ORTHO05D000106 5.8e-09 65.9 74 44.6
Lj8C128T7 Lonicera japonica HOM05D000176 ORTHO05D000106 7.5e-09 65.5 159 32.7
SGA_v2.0_scaffold134G34684 Striga asiatica HOM05D018751 ORTHO05D012560 7.5e-09 65.5 134 33.6
Lj1A1169T72 Lonicera japonica HOM05D000176 ORTHO05D000106 9.8e-09 65.1 117 32.5
Ca_07982_v3 Cicer arietinum L. HOM05D004283 ORTHO05D002183 2.2e-08 63.9 176 25.6
Ca_00650_v3 Cicer arietinum L. HOM05D004283 ORTHO05D002183 6.4e-08 62.4 116 31.9
Lj3A75T5 Lonicera japonica HOM05D000176 ORTHO05D000106 6.4e-08 62.4 73 39.7
SGA_v2.0_scaffold124G33587 Striga asiatica HOM05D018751 ORTHO05D012560 8.3e-08 62.0 134 32.1
TPR.G8598 Trifolium pratense HOM05D005718 ORTHO05D004853 1.1e-07 61.6 171 28.1
Ca_02277_v3 Cicer arietinum L. HOM05D004283 ORTHO05D002183 1.9e-07 60.8 176 27.8
Ca_14105_v3 Cicer arietinum L. HOM05D000176 ORTHO05D002183 1.9e-07 60.8 123 34.1
SGA_v2.0_scaffold280G46866 Striga asiatica HOM05D018751 ORTHO05D012560 2.4e-07 60.5 138 31.2
Ca_04586_v3 Cicer arietinum L. HOM05D000176 ORTHO05D002183 3.2e-07 60.1 122 35.2
Ca_13581_v3 Cicer arietinum L. HOM05D000176 ORTHO05D002183 3.2e-07 60.1 121 34.7
Lj4A312T8 Lonicera japonica HOM05D000176 ORTHO05D000106 3.2e-07 60.1 74 40.5
Ca_06912_v3 Cicer arietinum L. HOM05D004283 ORTHO05D002183 4.1e-07 59.7 117 30.8
Ca_22851_v3 Cicer arietinum L. HOM05D000176 ORTHO05D002183 5.4e-07 59.3 123 33.3
PSO675G7301 Papaver somniferum HOM05D000176 ORTHO05D000106 5.4e-07 59.3 119 33.6
Aqoxy6G02234 Aquilegia oxysepala HOM05D000176 ORTHO05D011435 7.1e-07 58.9 89 38.2
Ca_16741_v3 Cicer arietinum L. HOM05D000176 ORTHO05D002183 7.1e-07 58.9 118 33.9
Aqoxy6G02007 Aquilegia oxysepala HOM05D025411 ORTHO05D000106 9.2e-07 58.5 89 31.5
EL10As6g23633 Beta vulgaris HOM05D000176 ORTHO05D000106 9.2e-07 58.5 126 35.7
Ca_12050_v3 Cicer arietinum L. HOM05D004283 ORTHO05D002183 9.2e-07 58.5 116 31.0
Ca_23051_v3 Cicer arietinum L. HOM05D004283 ORTHO05D002183 9.2e-07 58.5 116 32.8
Ca_25322_v3 Cicer arietinum L. HOM05D000176 ORTHO05D002183 9.2e-07 58.5 123 32.5
Migut.J01216 Erythranthe guttata HOM05D000176 ORTHO05D000106 1.2e-06 58.2 123 30.9
FvH4_2g02784 Fragaria vesca HOM05D024902 ORTHO05D000106 1.2e-06 58.2 98 34.7
Lj4P686T45 Lonicera japonica HOM05D000176 ORTHO05D000106 1.6e-06 57.8 73 37.0
Ca_12157_v3 Cicer arietinum L. HOM05D004283 ORTHO05D002183 2.1e-06 57.4 118 30.5
Lj2A87G47 Lonicera japonica HOM05D000176 ORTHO05D000106 2.1e-06 57.4 73 43.8
Aqoxy7G02369 Aquilegia oxysepala HOM05D000176 ORTHO05D000106 2.7e-06 57.0 51 49.0
Aqoxy7G02373 Aquilegia oxysepala HOM05D000176 ORTHO05D000106 2.7e-06 57.0 51 49.0
Ca_20151_v3 Cicer arietinum L. HOM05D000176 ORTHO05D002183 2.7e-06 57.0 121 33.1
Lj1A171T29 Lonicera japonica HOM05D000176 ORTHO05D000106 2.7e-06 57.0 107 28.0
PSO384G2903 Papaver somniferum HOM05D000176 ORTHO05D000106 2.7e-06 57.0 151 29.8
Aqoxy3G01281 Aquilegia oxysepala HOM05D025411 ORTHO05D000140 4.6e-06 56.2 97 33.0
Lju2561C0T1 Lonicera japonica HOM05D000176 ORTHO05D000106 4.6e-06 56.2 71 39.4
TPR.G31932 Trifolium pratense HOM05D004942 ORTHO05D005687 4.6e-06 56.2 116 28.4
EL10Ac1g01877 Beta vulgaris HOM05D018751 ORTHO05D012560 6.0e-06 55.8 125 32.8
EL10Ac9g22588 Beta vulgaris HOM05D000176 ORTHO05D000106 6.0e-06 55.8 122 30.3
CSS0045174 Camellia sinensis var. sinensis HOM05D000176 ORTHO05D000106 6.0e-06 55.8 53 39.6
Ca_25328_v3 Cicer arietinum L. HOM05D000176 ORTHO05D002183 6.0e-06 55.8 121 33.9
Lj7A336T29 Lonicera japonica HOM05D000176 ORTHO05D000106 6.0e-06 55.8 69 40.6
Lj1g0013414 Lotus japonicus HOM05D004283 ORTHO05D002183 6.0e-06 55.8 130 27.7
Ca_05966_v3 Cicer arietinum L. HOM05D000176 ORTHO05D002183 7.8e-06 55.5 129 32.6
Ca_13126_v3 Cicer arietinum L. HOM05D000176 ORTHO05D000106 7.8e-06 55.5 107 34.6


User provided reference genes

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