Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim05G0103200 Rhododendron simsii HOM05D007310 ORTHO05D002375 2.4e-114 415.6 225 100.0
Dinv24166 Davidia involucrata HOM05D007310 ORTHO05D002375 6.0e-49 198.4 227 55.9
Actinidia28038 Actinidia chinensis HOM05D007310 ORTHO05D002375 7.4e-39 164.9 194 56.2
CSS0047922 Camellia sinensis var. sinensis HOM05D007310 ORTHO05D002375 3.7e-38 162.5 225 54.7
GSVIVG01015685001 Vitis vinifera HOM05D007310 ORTHO05D002375 4.6e-33 145.6 223 46.6
Migut.B00577 Erythranthe guttata HOM05D007310 ORTHO05D002375 5.7e-31 138.7 219 39.7
Oeu022081.1 Olea europaea HOM05D007310 ORTHO05D002375 5.7e-31 138.7 221 44.8
Peaxi162Scf00299g00914 Petunia axillaris HOM05D007310 ORTHO05D002375 2.2e-30 136.7 215 44.7
Cc02_g21140 Coffea canephora HOM05D007310 ORTHO05D002375 1.1e-29 134.4 218 44.5
Lalb_Chr09g0326871 Lupinus albus HOM05D007310 ORTHO05D002375 1.4e-29 134.0 214 39.3
PGSC0003DMG400012536 Solanum tuberosum HOM05D007310 ORTHO05D002375 4.1e-29 132.5 216 42.1
Hma1.2p1_0784F.1_g217300 Hydrangea macrophylla HOM05D007310 ORTHO05D002375 6.9e-29 131.7 128 64.1
Nitab4.5_0006625g0010 Nicotiana tabacum HOM05D007310 ORTHO05D002375 6.9e-29 131.7 216 42.1
Potri.001G310100 Populus trichocarpa HOM05D007310 ORTHO05D002375 6.9e-29 131.7 226 42.0
Solyc01g105600.3 Solanum lycopersicum HOM05D007310 ORTHO05D002375 6.9e-29 131.7 227 39.6
ECA234G2182 Erigeron canadensis HOM05D007310 ORTHO05D002375 1.2e-28 131.0 227 48.0
Sopen01g048060 Solanum pennellii HOM05D007310 ORTHO05D002375 1.2e-28 131.0 221 43.0
Cfa005685 Carpinus fangiana HOM05D007310 ORTHO05D002375 1.7e-27 127.1 224 42.4
Nitab4.5_0000863g0020 Nicotiana tabacum HOM05D007310 ORTHO05D002375 2.2e-27 126.7 223 40.4
Haze_10565 Corylus avellana HOM05D007310 ORTHO05D002375 6.5e-27 125.2 149 54.4
HanXRQChr10g0290991 Helianthus annuus HOM05D007310 ORTHO05D002375 3.2e-26 122.9 222 43.7
Eucgr.I02631 Eucalyptus grandis HOM05D007310 ORTHO05D002375 4.2e-26 122.5 133 58.6
SGA_v2.0_scaffold14G07142 Striga asiatica HOM05D007310 ORTHO05D002375 4.2e-26 122.5 221 36.7
Ciclev10030152m.g Citrus clementina HOM05D007310 ORTHO05D002375 1.6e-25 120.6 217 40.1
Thecc.02G133200 Theobroma cacao HOM05D007310 ORTHO05D002375 2.1e-25 120.2 227 41.4
Prupe.8G066300 Prunus persica HOM05D007310 ORTHO05D002375 2.7e-25 119.8 212 42.0
Glyma.13G042400 Glycine max HOM05D007310 ORTHO05D002375 4.6e-25 119.0 166 50.6
CAN.G523.36 Capsicum annuum HOM05D007310 ORTHO05D002375 7.9e-25 118.2 211 39.3
RcHm_v2.0_Chr7g0236611 Rosa chinensis HOM05D007310 ORTHO05D002375 1.8e-24 117.1 221 43.0
Manes.07G035800 Manihot esculenta HOM05D007310 ORTHO05D002375 3.9e-24 115.9 231 38.5
Nn5g29980 Nelumbo nucifera HOM05D007310 ORTHO05D002375 5.1e-24 115.5 210 41.0
MD05G1054900 Malus domestica HOM05D007310 ORTHO05D002375 1.1e-23 114.4 207 43.5
SalBow8G1210 Salvia bowleyana HOM05D007310 ORTHO05D002375 2.5e-23 113.2 222 36.5
DCAR_021882 Daucus carota HOM05D007310 ORTHO05D002375 3.3e-23 112.8 233 41.6
TPR.G2868 Trifolium pratense HOM05D007310 ORTHO05D002375 2.2e-22 110.2 222 41.0
arahy.Tifrunner.gnm1.ann1.KVX74B Arachis hypogaea HOM05D007310 ORTHO05D002375 2.8e-22 109.8 143 55.2
arahy.Tifrunner.gnm1.ann1.U7VQVC Arachis hypogaea HOM05D007310 ORTHO05D002375 2.8e-22 109.8 143 55.2
Manes.07G038100 Manihot esculenta HOM05D007310 ORTHO05D002375 2.8e-22 109.8 177 44.6
COL.COLO4_32323 Corchorus olitorius HOM05D007310 ORTHO05D002375 3.7e-22 109.4 206 40.3
Ca_18369_v3 Cicer arietinum L. HOM05D007310 ORTHO05D002375 6.3e-22 108.6 229 40.6
FAN27G1440 Fragaria x ananassa HOM05D007310 ORTHO05D002375 6.3e-22 108.6 220 37.7
FvH4_2g13500 Fragaria vesca HOM05D007310 ORTHO05D002375 8.2e-22 108.2 219 34.7
FAN24G3359 Fragaria x ananassa HOM05D007310 ORTHO05D004145 8.2e-22 108.2 169 36.7
Duzib248G0762 Durio zibethinus HOM05D007310 ORTHO05D002375 1.1e-21 107.8 168 45.8
Lj4g0014623 Lotus japonicus HOM05D007310 ORTHO05D002375 3.1e-21 106.3 227 39.6
Potri.017G050000 Populus trichocarpa HOM05D007310 ORTHO05D002375 5.3e-21 105.5 195 41.5
Psat7g100440 Pisum sativum HOM05D007310 ORTHO05D002375 6.9e-21 105.1 139 47.5
CiPaw.06G156100 Carya illinoinensis HOM05D007310 ORTHO05D002375 9.1e-21 104.8 137 55.5
Medtr4g093820 Medicago truncatula HOM05D007310 ORTHO05D002375 1.5e-20 104.0 222 38.7
QL11p023211 Quercus lobata HOM05D007310 ORTHO05D002375 1.5e-20 104.0 222 39.2
VMungo0251G1327 Vigna mungo HOM05D007310 ORTHO05D002375 2.0e-20 103.6 140 50.7
FAN15G0442 Fragaria x ananassa HOM05D007310 ORTHO05D002375 1.7e-19 100.5 218 39.0
PGR142G1548 Punica granatum HOM05D007310 ORTHO05D002375 2.9e-19 99.8 222 38.3
CiPaw.05G032100 Carya illinoinensis HOM05D007310 ORTHO05D002375 6.5e-19 98.6 128 55.5
TAR376G0136 Trochodendron aralioides HOM05D007310 ORTHO05D002375 6.5e-19 98.6 215 41.4
AUR62011722 Chenopodium quinoa HOM05D007310 ORTHO05D002375 8.5e-19 98.2 136 50.0
EL10Ac9g21224 Beta vulgaris HOM05D007310 ORTHO05D002375 2.5e-18 96.7 119 54.6
Cpa.g.sc42.21 Carica papaya HOM05D007310 ORTHO05D002375 2.5e-18 96.7 222 39.6
AT2G14095 Arabidopsis thaliana HOM05D007310 ORTHO05D002375 5.5e-18 95.5 136 41.9
Carub.0003s2834 Capsella rubella HOM05D007310 ORTHO05D002375 7.2e-18 95.1 145 40.0
Phvul.002G211100 Phaseolus vulgaris HOM05D007310 ORTHO05D002375 7.2e-18 95.1 164 45.7
AUR62012905 Chenopodium quinoa HOM05D007310 ORTHO05D002375 1.6e-17 94.0 136 48.5
THA.LOC104804411 Tarenaya hassleriana HOM05D007310 ORTHO05D002375 1.6e-17 94.0 212 41.5
Sc08g0003780 Simmondsia chinensis HOM05D007310 ORTHO05D002375 3.6e-17 92.8 222 36.9
Sabra16G0196000 Salix brachista HOM05D007310 ORTHO05D002375 6.1e-17 92.0 196 39.3
MBI06_g03314_MAGBIO Magnolia biondii HOM05D007310 ORTHO05D002375 1.4e-16 90.9 143 45.5
PSO761G0222 Papaver somniferum HOM05D007310 ORTHO05D002375 1.1e-15 87.8 116 42.2
Glyma.08G070200 Glycine max HOM05D007310 ORTHO05D002375 2.6e-15 86.7 162 46.3
CARHR104210 Cardamine hirsuta HOM05D007310 ORTHO05D002375 3.3e-15 86.3 134 39.6
Nn1g05467 Nelumbo nucifera HOM05D004728 ORTHO05D002375 3.3e-15 86.3 119 47.1
TWI14G0938 Tripterygium wilfordii HOM05D007310 ORTHO05D002375 3.3e-15 86.3 228 36.4
Sp3g27450 Schrenkiella parvula HOM05D007310 ORTHO05D002375 1.3e-14 84.3 139 47.5
CANSAT11G0123 Cannabis sativa HOM05D007310 ORTHO05D002375 1.7e-14 84.0 129 48.8
AL3G45790 Arabidopsis lyrata HOM05D007310 ORTHO05D002375 2.2e-14 83.6 135 40.0
Duzib147G1195 Durio zibethinus HOM05D004728 ORTHO05D002375 2.2e-14 83.6 123 48.0
CSS0024408 Camellia sinensis var. sinensis HOM05D007310 ORTHO05D002375 2.8e-14 83.2 72 65.3
CSS0048944 Camellia sinensis var. sinensis HOM05D007310 ORTHO05D002375 4.1e-13 79.3 61 67.2
Dinv07081 Davidia involucrata HOM05D004728 ORTHO05D002375 4.5e-12 75.9 148 38.5
BcaB08g34551 Brassica carinata HOM05D007310 ORTHO05D002375 7.7e-12 75.1 135 44.4
Gohir.D02G199400 Gossypium hirsutum HOM05D007310 ORTHO05D002375 7.7e-12 75.1 110 50.0
RcHm_v2.0_Chr2g0112261 Rosa chinensis HOM05D004728 ORTHO05D002375 1.3e-11 74.3 144 41.0
PGR042G1769 Punica granatum HOM05D004728 ORTHO05D002375 1.7e-11 73.9 121 43.8
Haze_18251 Corylus avellana HOM05D004728 ORTHO05D002375 2.2e-11 73.6 177 36.2
Sabra17G0036600 Salix brachista HOM05D007310 ORTHO05D002375 2.2e-11 73.6 96 53.1
Atru.chr13.1111 Acer truncatum HOM05D004728 ORTHO05D002375 5.0e-11 72.4 118 43.2
Cfa017900 Carpinus fangiana HOM05D004728 ORTHO05D002375 6.5e-11 72.0 184 34.2
BcaC01g03103 Brassica carinata HOM05D007310 ORTHO05D002375 1.1e-10 71.2 134 38.8
Sabra02G0079700 Salix brachista HOM05D004728 ORTHO05D002375 1.1e-10 71.2 128 43.0
Sed0021578 Sechium edule HOM05D007310 ORTHO05D002375 1.5e-10 70.9 107 49.5
MD15G1377600 Malus domestica HOM05D004728 ORTHO05D002375 1.9e-10 70.5 155 38.1
TAR376G0070 Trochodendron aralioides HOM05D015253 ORTHO05D002375 1.9e-10 70.5 170 28.2
TAR625G1009 Trochodendron aralioides HOM05D007310 ORTHO05D002375 2.5e-10 70.1 151 35.8
DCAR_003461 Daucus carota HOM05D004728 ORTHO05D002375 3.2e-10 69.7 115 34.8
MD15G1317700 Malus domestica HOM05D004728 ORTHO05D002375 4.2e-10 69.3 137 39.4
MD08G1189800 Malus domestica HOM05D004728 ORTHO05D002375 5.5e-10 68.9 162 35.2
Sabra17G0042000 Salix brachista HOM05D007310 ORTHO05D002375 5.5e-10 68.9 96 49.0
ClCG09G015950 Citrullus lanatus HOM05D007310 ORTHO05D002375 7.2e-10 68.6 103 49.5
Lsat_1_v5_gn_1_2840 Lactuca sativa HOM05D004728 ORTHO05D002375 7.2e-10 68.6 112 42.9
PSO761G0559 Papaver somniferum HOM05D015253 ORTHO05D002375 7.2e-10 68.6 108 31.5
C03p56020 Brassica napus HOM05D007310 ORTHO05D002375 9.4e-10 68.2 135 39.3
BolC3t17888H Brassica oleracea HOM05D007310 ORTHO05D002375 9.4e-10 68.2 135 39.3
Migut.C01097 Erythranthe guttata HOM05D004728 ORTHO05D002375 9.4e-10 68.2 121 42.1
FAN28G1290 Fragaria x ananassa HOM05D004728 ORTHO05D002375 9.4e-10 68.2 108 42.6
ECA247G2878 Erigeron canadensis HOM05D004728 ORTHO05D002375 1.2e-09 67.8 150 35.3
MELO3C018616.2 Cucumis melo HOM05D007310 ORTHO05D002375 2.1e-09 67.0 107 46.7
HPP92_019302 Vanilla planifolia HOM05D007310 ORTHO05D002375 2.1e-09 67.0 136 37.5
BraA03t13650Z Brassica rapa HOM05D007310 ORTHO05D002375 2.7e-09 66.6 134 39.6
CSS0049063 Camellia sinensis var. sinensis HOM05D004728 ORTHO05D002375 2.7e-09 66.6 132 40.9
FvH4_1g20190 Fragaria vesca HOM05D004728 ORTHO05D002375 2.7e-09 66.6 114 43.9
FAN19G1373 Fragaria x ananassa HOM05D004728 ORTHO05D002375 2.7e-09 66.6 114 43.9
A03p45150 Brassica napus HOM05D007310 ORTHO05D002375 3.6e-09 66.2 134 41.0
FAN19G1066 Fragaria x ananassa HOM05D004728 ORTHO05D002375 3.6e-09 66.2 108 41.7
FAN23G2235 Fragaria x ananassa HOM05D004728 ORTHO05D002375 3.6e-09 66.2 108 41.7
RcHm_v2.0_Chr2g0112251 Rosa chinensis HOM05D004728 ORTHO05D002375 3.6e-09 66.2 189 31.7
Aa31LG8G12500 Aethionema arabicum HOM05D007310 ORTHO05D002375 4.7e-09 65.9 121 36.4
CiPaw.16G032300 Carya illinoinensis HOM05D004728 ORTHO05D002375 4.7e-09 65.9 129 39.5
PSO700G0139 Papaver somniferum HOM05D007310 ORTHO05D002375 4.7e-09 65.9 156 34.6
FAN26G1362 Fragaria x ananassa HOM05D004728 ORTHO05D002375 6.1e-09 65.5 108 40.7
Thhalv10022863m.g Eutrema salsugineum HOM05D007310 ORTHO05D002375 8.0e-09 65.1 114 36.8
Duzib093G2113 Durio zibethinus HOM05D004728 ORTHO05D002375 1.4e-08 64.3 178 33.7
Gorai.005G224000 Gossypium raimondii HOM05D007310 ORTHO05D002375 1.4e-08 64.3 110 47.3
Atru.chr6.1218 Acer truncatum HOM05D007310 ORTHO05D002375 1.8e-08 63.9 87 57.5
CsaV3_7G006790 Cucumis sativus L. HOM05D007310 ORTHO05D002375 1.8e-08 63.9 132 42.4
Oeu045990.1 Olea europaea HOM05D004728 ORTHO05D002375 1.8e-08 63.9 130 36.9
unitig_0.g2111 Utricularia gibba HOM05D004728 ORTHO05D002375 1.8e-08 63.9 120 40.8
Actinidia10351 Actinidia chinensis HOM05D007310 ORTHO05D002375 3.0e-08 63.2 128 46.1
ECA247G1585 Erigeron canadensis HOM05D004728 ORTHO05D002375 3.0e-08 63.2 122 32.8
Os04g0450600 Oryza sativa ssp. japonica HOM05D021312 ORTHO05D012887 3.0e-08 63.2 156 29.5
Cfa017899 Carpinus fangiana HOM05D004728 ORTHO05D002375 4.0e-08 62.8 135 38.5
FvH4_1g20180 Fragaria vesca HOM05D004728 ORTHO05D002375 4.0e-08 62.8 108 41.7
Rhsim06G0077100 Rhododendron simsii HOM05D004728 ORTHO05D002375 8.8e-08 61.6 143 36.4
HanXRQChr17g0556311 Helianthus annuus HOM05D004728 ORTHO05D002375 1.1e-07 61.2 126 40.5
Aqoxy476s002 Aquilegia oxysepala HOM05D004728 ORTHO05D002375 1.5e-07 60.8 118 27.1
Aqoxy6G00703 Aquilegia oxysepala HOM05D004728 ORTHO05D002375 1.5e-07 60.8 118 27.1
HanXRQChr17g0556321 Helianthus annuus HOM05D004728 ORTHO05D002375 1.5e-07 60.8 220 23.2
Sc01g0000880 Simmondsia chinensis HOM05D004728 ORTHO05D002375 1.5e-07 60.8 109 41.3
Zm00001eb027840 Zea mays HOM05D007310 ORTHO05D002375 1.5e-07 60.8 91 45.1
Duzib132G0922 Durio zibethinus HOM05D007310 ORTHO05D002375 2.6e-07 60.1 88 43.2
Hund26995 Selenicereus undatus HOM05D004728 ORTHO05D002375 2.6e-07 60.1 169 37.3
Peaxi162Scf00044g01721 Petunia axillaris HOM05D019315 ORTHO05D002375 3.3e-07 59.7 123 43.9
GSVIVG01009093001 Vitis vinifera HOM05D004728 ORTHO05D002375 3.3e-07 59.7 115 40.9
Dinv13237 Davidia involucrata HOM05D004728 ORTHO05D002375 4.4e-07 59.3 173 31.2
Oeu045992.1 Olea europaea HOM05D004728 ORTHO05D002375 4.4e-07 59.3 139 40.3
Peaxi162Scf01184g00014 Petunia axillaris HOM05D004728 ORTHO05D002375 4.4e-07 59.3 134 42.5
Sopen04g029740 Solanum pennellii HOM05D021150 ORTHO05D002375 4.4e-07 59.3 119 45.4
CANSAT01G0157 Cannabis sativa HOM05D004728 ORTHO05D002375 5.7e-07 58.9 98 45.9
CANSAT25G2000 Cannabis sativa HOM05D004728 ORTHO05D002375 5.7e-07 58.9 188 32.4
Lsat_1_v5_gn_5_108861 Lactuca sativa HOM05D007310 ORTHO05D002375 5.7e-07 58.9 130 40.8
HanXRQChr17g0561041 Helianthus annuus HOM05D004728 ORTHO05D002375 7.5e-07 58.5 122 31.1
Solyc04g074780.4 Solanum lycopersicum HOM05D021150 ORTHO05D002375 7.5e-07 58.5 132 43.2
MELO3C011050.2 Cucumis melo HOM05D039494 ORTHO05D002375 9.7e-07 58.2 96 36.5
ATR0684G111 Amborella trichopoda HOM05D007310 ORTHO05D002375 1.3e-06 57.8 88 50.0
Gorai.009G233200 Gossypium raimondii HOM05D004728 ORTHO05D002375 1.3e-06 57.8 127 37.0
unitig_747.g21502 Utricularia gibba HOM05D004728 ORTHO05D002375 1.3e-06 57.8 112 42.9
Gohir.A02G076900 Gossypium hirsutum HOM05D004728 ORTHO05D002375 1.7e-06 57.4 102 44.1
Gorai.005G094700 Gossypium raimondii HOM05D004728 ORTHO05D002375 1.7e-06 57.4 102 44.1
Thecc.08G100900 Theobroma cacao HOM05D004728 ORTHO05D002375 1.7e-06 57.4 131 35.9
ClCG08G011340 Citrullus lanatus HOM05D039494 ORTHO05D002375 2.2e-06 57.0 120 42.5
Duzib116G0314 Durio zibethinus HOM05D004728 ORTHO05D002375 2.8e-06 56.6 123 39.8
FAN26G2532 Fragaria x ananassa HOM05D004728 ORTHO05D002375 2.8e-06 56.6 97 45.4
MBI02_g10701_MAGBIO Magnolia biondii HOM05D007310 ORTHO05D002375 2.8e-06 56.6 158 34.8
Actinidia33119 Actinidia chinensis HOM05D004728 ORTHO05D002375 3.7e-06 56.2 120 37.5
Lsat_1_v5_gn_9_73441 Lactuca sativa HOM05D004728 ORTHO05D002375 3.7e-06 56.2 120 29.2
PGSC0003DMG400030843 Solanum tuberosum HOM05D021150 ORTHO05D002375 3.7e-06 56.2 132 40.9
AUR62027821 Chenopodium quinoa HOM05D059013 ORTHO05D002375 4.8e-06 55.8 122 32.0
COL.COLO4_11993 Corchorus olitorius HOM05D004728 ORTHO05D002375 4.8e-06 55.8 111 42.3
Lj4A95G11 Lonicera japonica HOM05D004728 ORTHO05D002375 6.3e-06 55.5 98 43.9
Sopen05g029860 Solanum pennellii HOM05D000436 ORTHO05D001944 6.3e-06 55.5 182 31.3
HanXRQChr13g0391971 Helianthus annuus HOM05D004728 ORTHO05D002375 8.2e-06 55.1 128 32.0


User provided reference genes

Program Settings