Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim05G0103100 Rhododendron simsii HOM05D003425 ORTHO05D003897 6.3e-249 863.6 427 100.0
Rhsim06G0029700 Rhododendron simsii HOM05D003425 ORTHO05D003897 4.8e-71 272.7 259 61.0
Actinidia22523 Actinidia chinensis HOM05D003425 ORTHO05D003897 3.0e-65 253.4 328 49.4
vmacro21674 Vaccinium macrocarpon HOM05D003425 ORTHO05D003897 5.8e-61 239.2 340 48.2
CSS0009417 Camellia sinensis var. sinensis HOM05D003425 ORTHO05D003897 5.5e-59 232.6 273 52.4
vmacro13340 Vaccinium macrocarpon HOM05D003425 ORTHO05D003897 8.2e-55 218.8 261 51.7
Dinv36112 Davidia involucrata HOM05D003425 ORTHO05D003897 1.8e-54 217.6 251 52.2
GSVIVG01009755001 Vitis vinifera HOM05D003425 ORTHO05D003897 1.1e-51 208.4 300 43.0
Lj4A789T47 Lonicera japonica HOM05D003425 ORTHO05D003897 2.5e-51 207.2 321 42.1
Cfa013863 Carpinus fangiana HOM05D003425 ORTHO05D003897 2.7e-50 203.8 300 43.3
FvH4_2g39440 Fragaria vesca HOM05D003425 ORTHO05D003897 9.7e-48 195.3 249 47.4
FAN20G1443 Fragaria x ananassa HOM05D003425 ORTHO05D003897 3.7e-47 193.4 249 47.0
FAN27G0002 Fragaria x ananassa HOM05D003425 ORTHO05D003897 3.7e-47 193.4 301 41.9
Cc10_g02550 Coffea canephora HOM05D003425 ORTHO05D003897 6.3e-47 192.6 255 45.1
Gohir.D05G195200 Gossypium hirsutum HOM05D003425 ORTHO05D003897 1.4e-46 191.4 311 40.8
PGR031G1797 Punica granatum HOM05D003425 ORTHO05D003897 3.1e-46 190.3 255 45.1
Nn5g29685 Nelumbo nucifera HOM05D003425 ORTHO05D003897 4.1e-46 189.9 252 44.4
Gorai.009G200000 Gossypium raimondii HOM05D003425 ORTHO05D003897 6.9e-46 189.1 311 40.5
Potri.005G230200 Populus trichocarpa HOM05D003425 ORTHO05D003897 6.9e-46 189.1 257 44.7
Prupe.1G375600 Prunus persica HOM05D003425 ORTHO05D003897 9.1e-46 188.7 252 46.4
Atru.chr13.426 Acer truncatum HOM05D003425 ORTHO05D003897 1.5e-45 188.0 250 46.8
Gohir.A05G191900 Gossypium hirsutum HOM05D003425 ORTHO05D003897 1.5e-45 188.0 311 40.5
RcHm_v2.0_Chr6g0301531 Rosa chinensis HOM05D003425 ORTHO05D003897 1.5e-45 188.0 249 47.0
Hma1.2p1_0775F.1_g216480 Hydrangea macrophylla HOM05D003425 ORTHO05D003897 2.0e-45 187.6 260 46.2
Peaxi162Scf00140g00065 Petunia axillaris HOM05D003425 ORTHO05D003897 2.6e-45 187.2 276 43.5
Duzib093G1530 Durio zibethinus HOM05D003425 ORTHO05D003897 3.4e-45 186.8 254 45.3
Sopen04g034260 Solanum pennellii HOM05D003425 ORTHO05D003897 3.4e-45 186.8 254 46.1
VMungo0647G0080 Vigna mungo HOM05D003425 ORTHO05D003897 3.4e-45 186.8 262 44.3
Lalb_Chr22g0354631 Lupinus albus HOM05D003425 ORTHO05D003897 4.5e-45 186.4 257 43.6
MD15G1023500 Malus domestica HOM05D003425 ORTHO05D003897 4.5e-45 186.4 246 46.7
Solyc04g080670.3 Solanum lycopersicum HOM05D003425 ORTHO05D003897 5.9e-45 186.0 254 46.1
TAR625G0421 Trochodendron aralioides HOM05D003425 ORTHO05D003897 7.7e-45 185.7 251 44.6
Sc26g0003500 Simmondsia chinensis HOM05D003425 ORTHO05D003897 1.0e-44 185.3 262 43.9
QL02p009392 Quercus lobata HOM05D003425 ORTHO05D003897 1.3e-44 184.9 251 47.4
Thecc.08G031800 Theobroma cacao HOM05D003425 ORTHO05D003897 2.2e-44 184.1 300 39.3
Cpa.g.sc99.35 Carica papaya HOM05D003425 ORTHO05D003897 2.9e-44 183.7 261 43.7
PGSC0003DMG400003698 Solanum tuberosum HOM05D003425 ORTHO05D003897 3.8e-44 183.3 262 45.4
Duzib041G0299 Durio zibethinus HOM05D003425 ORTHO05D003897 5.0e-44 183.0 306 39.5
Ciclev10001170m.g Citrus clementina HOM05D003425 ORTHO05D003897 6.5e-44 182.6 251 44.2
Glyma.04G030000 Glycine max HOM05D003425 ORTHO05D003897 6.5e-44 182.6 264 43.6
Lj1g0002363 Lotus japonicus HOM05D003425 ORTHO05D003897 8.5e-44 182.2 250 45.2
Lalb_Chr23g0266531 Lupinus albus HOM05D003425 ORTHO05D003897 8.5e-44 182.2 256 44.5
ClCG08G014810 Citrullus lanatus HOM05D003425 ORTHO05D003897 1.1e-43 181.8 337 40.1
MD08G1026900 Malus domestica HOM05D003425 ORTHO05D003897 1.1e-43 181.8 247 46.2
Prupe.1G549800 Prunus persica HOM05D003425 ORTHO05D003897 1.4e-43 181.4 250 47.2
COL.COLO4_26258 Corchorus olitorius HOM05D003425 ORTHO05D003897 1.9e-43 181.0 298 39.6
CsaV3_2G028930 Cucumis sativus L. HOM05D003425 ORTHO05D003897 3.2e-43 180.3 255 45.9
Manes.05G156100 Manihot esculenta HOM05D003425 ORTHO05D003897 4.2e-43 179.9 248 44.8
Nitab4.5_0005911g0010 Nicotiana tabacum HOM05D003425 ORTHO05D003897 5.5e-43 179.5 298 40.3
Cpa.g.sc104.107 Carica papaya HOM05D003425 ORTHO05D003897 7.2e-43 179.1 253 45.5
MELO3C010962.2 Cucumis melo HOM05D003425 ORTHO05D003897 7.2e-43 179.1 337 39.5
Medtr3g112130 Medicago truncatula HOM05D003425 ORTHO05D003897 9.4e-43 178.7 259 42.9
MBI10_g00770_MAGBIO Magnolia biondii HOM05D003425 ORTHO05D003897 1.6e-42 177.9 269 42.0
Ca_15494_v3 Cicer arietinum L. HOM05D003425 ORTHO05D003897 2.1e-42 177.6 256 43.0
THA.LOC104814145 Tarenaya hassleriana HOM05D003425 ORTHO05D003897 2.1e-42 177.6 247 44.9
CAN.G710.1 Capsicum annuum HOM05D003425 ORTHO05D003897 3.6e-42 176.8 249 46.2
Phvul.009G060100 Phaseolus vulgaris HOM05D003425 ORTHO05D003897 3.6e-42 176.8 281 43.1
Glyma.06G030100 Glycine max HOM05D003425 ORTHO05D003897 4.7e-42 176.4 278 42.4
Manes.18G020000 Manihot esculenta HOM05D003425 ORTHO05D003897 4.7e-42 176.4 245 44.5
TPR.G14394 Trifolium pratense HOM05D003425 ORTHO05D003897 4.7e-42 176.4 251 44.2
Nitab4.5_0003682g0010 Nicotiana tabacum HOM05D003425 ORTHO05D003897 6.1e-42 176.0 296 39.9
Peaxi162Scf00028g00119 Petunia axillaris HOM05D003425 ORTHO05D003897 6.1e-42 176.0 257 44.4
arahy.Tifrunner.gnm1.ann1.P3QKDQ Arachis hypogaea HOM05D003425 ORTHO05D003897 7.9e-42 175.6 317 39.4
ECA233G5099 Erigeron canadensis HOM05D003425 ORTHO05D003897 7.9e-42 175.6 258 43.8
Sed0012207 Sechium edule HOM05D003425 ORTHO05D003897 7.9e-42 175.6 255 45.1
Psat5g016160 Pisum sativum HOM05D003425 ORTHO05D003897 1.0e-41 175.3 252 43.3
Potri.002G032900 Populus trichocarpa HOM05D003425 ORTHO05D003897 1.0e-41 175.3 254 44.9
Psat6g009400 Pisum sativum HOM05D003425 ORTHO05D003897 1.4e-41 174.9 246 44.7
arahy.Tifrunner.gnm1.ann1.X2SRZK Arachis hypogaea HOM05D003425 ORTHO05D003897 1.8e-41 174.5 317 39.4
CiPaw.07G158500 Carya illinoinensis HOM05D003425 ORTHO05D003897 1.8e-41 174.5 249 44.2
Gohir.A06G008100 Gossypium hirsutum HOM05D003425 ORTHO05D003897 1.8e-41 174.5 254 42.5
Gohir.D06G003800 Gossypium hirsutum HOM05D003425 ORTHO05D003897 1.8e-41 174.5 254 42.5
Gorai.010G008400 Gossypium raimondii HOM05D003425 ORTHO05D003897 1.8e-41 174.5 254 42.5
Ca_18048_v3 Cicer arietinum L. HOM05D003425 ORTHO05D003897 2.3e-41 174.1 251 44.2
Phvul.001G012200 Phaseolus vulgaris HOM05D003425 ORTHO05D003897 2.3e-41 174.1 257 42.8
Glyma.14G072200 Glycine max HOM05D003425 ORTHO05D003897 3.9e-41 173.3 258 43.8
TPR.G12467 Trifolium pratense HOM05D003425 ORTHO05D003897 8.8e-41 172.2 243 44.4
Migut.C00755 Erythranthe guttata HOM05D003425 ORTHO05D003897 1.1e-40 171.8 300 39.0
Lj5g0018838 Lotus japonicus HOM05D003425 ORTHO05D003897 1.1e-40 171.8 256 43.4
BraA08t34791Z Brassica rapa HOM05D003425 ORTHO05D003897 1.5e-40 171.4 254 42.9
A08p28610 Brassica napus HOM05D003425 ORTHO05D003897 2.0e-40 171.0 254 42.9
Hund17177 Selenicereus undatus HOM05D003425 ORTHO05D003897 2.0e-40 171.0 277 40.1
BcaC07g39145 Brassica carinata HOM05D003425 ORTHO05D003897 2.6e-40 170.6 254 42.9
C08p21380 Brassica napus HOM05D003425 ORTHO05D003897 2.6e-40 170.6 254 42.9
BolC8t49775H Brassica oleracea HOM05D003425 ORTHO05D003897 5.7e-40 169.5 254 42.5
Medtr1g022475 Medicago truncatula HOM05D003425 ORTHO05D003897 5.7e-40 169.5 250 43.6
Lsat_1_v5_gn_6_69620 Lactuca sativa HOM05D003425 ORTHO05D003897 7.4e-40 169.1 313 38.0
Sp1g19600 Schrenkiella parvula HOM05D003425 ORTHO05D003897 7.4e-40 169.1 253 42.3
VMungo1309G3095 Vigna mungo HOM05D003425 ORTHO05D003897 7.4e-40 169.1 270 41.5
SalBow7G0662 Salvia bowleyana HOM05D003425 ORTHO05D003897 9.7e-40 168.7 251 42.6
TWI56G1347 Tripterygium wilfordii HOM05D003425 ORTHO05D003897 1.3e-39 168.3 257 43.6
PSO675G3885 Papaver somniferum HOM05D003425 ORTHO05D003897 2.2e-39 167.5 253 41.1
A09p20000 Brassica napus HOM05D003425 ORTHO05D003897 2.8e-39 167.2 263 43.7
Eucgr.F01873 Eucalyptus grandis HOM05D003425 ORTHO05D003897 2.8e-39 167.2 252 42.1
Aa31LG9G12880 Aethionema arabicum HOM05D003425 ORTHO05D003897 3.7e-39 166.8 247 45.3
Migut.C00703 Erythranthe guttata HOM05D003425 ORTHO05D003897 3.7e-39 166.8 258 43.0
Rhsim05G0129700 Rhododendron simsii HOM05D003425 ORTHO05D003897 3.7e-39 166.8 401 37.2
Thhalv10007647m.g Eutrema salsugineum HOM05D003425 ORTHO05D003897 4.8e-39 166.4 254 41.7
Sp2g07500 Schrenkiella parvula HOM05D003425 ORTHO05D003897 6.3e-39 166.0 247 46.6
Carub.0001s2165 Capsella rubella HOM05D003425 ORTHO05D003897 1.8e-38 164.5 317 37.5
HanXRQChr05g0151701 Helianthus annuus HOM05D003425 ORTHO05D003897 2.4e-38 164.1 250 42.8
BraA09t37609Z Brassica rapa HOM05D003425 ORTHO05D003897 3.1e-38 163.7 302 40.1
DCAR_009967 Daucus carota HOM05D003425 ORTHO05D003897 3.1e-38 163.7 263 41.8
Lj2A96T68 Lonicera japonica HOM05D003425 ORTHO05D003897 4.1e-38 163.3 364 34.9
SalBow2G1759 Salvia bowleyana HOM05D003425 ORTHO05D003897 5.3e-38 162.9 250 42.0
BcaB07g31042 Brassica carinata HOM05D003425 ORTHO05D003897 7.0e-38 162.5 253 43.5
ClCG05G018770 Citrullus lanatus HOM05D003425 ORTHO05D003897 7.0e-38 162.5 255 42.4
ECA246G1007 Erigeron canadensis HOM05D003425 ORTHO05D003897 7.0e-38 162.5 259 41.3
PSO541G3967 Papaver somniferum HOM05D003425 ORTHO05D003897 1.5e-37 161.4 253 40.3
Aa31LG7G6080 Aethionema arabicum HOM05D003425 ORTHO05D003897 2.6e-37 160.6 252 41.7
CANSAT80G1124 Cannabis sativa HOM05D003425 ORTHO05D003897 2.6e-37 160.6 287 39.0
AT1G22100 Arabidopsis thaliana HOM05D003425 ORTHO05D003897 3.5e-37 160.2 249 43.0
CSS0020037 Camellia sinensis var. sinensis HOM05D003425 ORTHO05D003897 4.5e-37 159.8 252 43.3
Aqoxy6G01168 Aquilegia oxysepala HOM05D003425 ORTHO05D003897 5.9e-37 159.5 249 41.0
AL1G35540 Arabidopsis lyrata HOM05D003425 ORTHO05D003897 5.9e-37 159.5 249 43.4
BcaB03g11898 Brassica carinata HOM05D003425 ORTHO05D003897 5.9e-37 159.5 248 41.9
C09p25370 Brassica napus HOM05D003425 ORTHO05D003897 5.9e-37 159.5 247 44.9
arahy.Tifrunner.gnm1.ann1.2UC4WV Arachis hypogaea HOM05D003425 ORTHO05D003897 7.7e-37 159.1 297 38.7
CARHR022450 Cardamine hirsuta HOM05D003425 ORTHO05D003897 7.7e-37 159.1 257 41.6
HanXRQChr08g0236251 Helianthus annuus HOM05D003425 ORTHO05D003897 1.0e-36 158.7 309 37.5
AL8G18220 Arabidopsis lyrata HOM05D003425 ORTHO05D003897 1.7e-36 157.9 250 44.0
Sed0018986 Sechium edule HOM05D003425 ORTHO05D003897 1.7e-36 157.9 278 40.3
Haze_22537 Corylus avellana HOM05D003425 ORTHO05D003897 2.2e-36 157.5 225 44.9
Carub.0008s0609 Capsella rubella HOM05D003425 ORTHO05D003897 2.9e-36 157.1 242 45.0
CsaV3_3G045400 Cucumis sativus L. HOM05D003425 ORTHO05D003897 2.9e-36 157.1 284 40.1
BcaC04g21968 Brassica carinata HOM05D003425 ORTHO05D003897 3.8e-36 156.8 297 39.7
THA.LOC104813817 Tarenaya hassleriana HOM05D003425 ORTHO05D003897 3.8e-36 156.8 254 43.7
arahy.Tifrunner.gnm1.ann1.2NS234 Arachis hypogaea HOM05D003425 ORTHO05D003897 5.0e-36 156.4 283 37.8
Rhsim07G0021500 Rhododendron simsii HOM05D003425 ORTHO05D003897 6.5e-36 156.0 225 46.7
Thhalv10003206m.g Eutrema salsugineum HOM05D003425 ORTHO05D003897 8.5e-36 155.6 247 43.3
AT5G42810 Arabidopsis thaliana HOM05D003425 ORTHO05D003897 1.1e-35 155.2 242 45.5
BolC9t55437H Brassica oleracea HOM05D003425 ORTHO05D003897 1.1e-35 155.2 247 44.1
MELO3C003802.2 Cucumis melo HOM05D003425 ORTHO05D003897 1.1e-35 155.2 284 39.8
Lsat_1_v5_gn_5_3401 Lactuca sativa HOM05D003425 ORTHO05D003897 1.1e-35 155.2 310 36.5
Os04g0661200 Oryza sativa ssp. japonica HOM05D003425 ORTHO05D003897 1.1e-35 155.2 242 40.9
SGA_v2.0_scaffold201G41381 Striga asiatica HOM05D003425 ORTHO05D003897 5.5e-35 152.9 261 40.2
DCAR_017527 Daucus carota HOM05D003425 ORTHO05D003897 7.2e-35 152.5 262 41.6
CARHR181460 Cardamine hirsuta HOM05D003425 ORTHO05D003897 1.2e-34 151.8 235 44.3
AUR62014493 Chenopodium quinoa HOM05D003425 ORTHO05D003897 6.1e-34 149.4 250 38.0
Zm00001eb067500 Zea mays HOM05D003425 ORTHO05D003897 8.8e-33 145.6 253 37.9
Rhsim07G0021300 Rhododendron simsii HOM05D003425 ORTHO05D003897 2.6e-32 144.1 219 44.7
Zm00001eb432760 Zea mays HOM05D003425 ORTHO05D003897 4.4e-32 143.3 255 38.0
Oeu030423.1 Olea europaea HOM05D003425 ORTHO05D003897 7.4e-32 142.5 122 57.4
Oeu063611.1 Olea europaea HOM05D003425 ORTHO05D003897 7.4e-32 142.5 284 35.6
Cc00_g02970 Coffea canephora HOM05D003425 ORTHO05D003897 2.4e-30 137.5 159 45.9
AT1G58643 Arabidopsis thaliana HOM05D003425 ORTHO05D003897 4.1e-30 136.7 320 34.1
AT1G58936 Arabidopsis thaliana HOM05D003425 ORTHO05D003897 4.1e-30 136.7 320 34.1
AT1G59312 Arabidopsis thaliana HOM05D003425 ORTHO05D003897 4.1e-30 136.7 320 34.1
Carub.0002s0599 Capsella rubella HOM05D003425 ORTHO05D003897 4.1e-30 136.7 261 37.5
Sed0022647 Sechium edule HOM05D003425 ORTHO05D003897 9.1e-30 135.6 227 42.7
ATR0568G131 Amborella trichopoda HOM05D003425 ORTHO05D003897 1.6e-29 134.8 260 36.5
EL10Ac1g00639 Beta vulgaris HOM05D003425 ORTHO05D003897 2.6e-29 134.0 200 41.0
AL2G17640 Arabidopsis lyrata HOM05D003425 ORTHO05D003897 4.5e-29 133.3 318 33.3
SHI08133 Sapria himalayana HOM05D003425 ORTHO05D003897 1.7e-28 131.3 252 39.3
SEGI_18330 Sequoiadendron giganteum HOM05D003425 ORTHO05D003897 1.6e-26 124.8 275 33.1
QL07p047090 Quercus lobata HOM05D003425 ORTHO05D003897 3.6e-26 123.6 98 62.2
SEGI_21240 Sequoiadendron giganteum HOM05D003425 ORTHO05D003897 6.1e-26 122.9 275 32.7
CDE06G1246 Ceratophyllum demersum HOM05D003425 ORTHO05D003897 4.4e-24 116.7 254 32.7
arahy.Tifrunner.gnm1.ann1.PN9ZPA Arachis hypogaea HOM05D008068 ORTHO05D003897 5.7e-24 116.3 128 49.2
AUR62038045 Chenopodium quinoa HOM05D003425 ORTHO05D003897 3.7e-23 113.6 256 33.6
C07p21730 Brassica napus HOM05D003425 ORTHO05D003897 4.8e-23 113.2 86 59.3
BolC7t42703H Brassica oleracea HOM05D003425 ORTHO05D003897 4.8e-23 113.2 86 59.3
AUR62044165 Chenopodium quinoa HOM05D003425 ORTHO05D003897 7.0e-22 109.4 200 37.5
CDE02G1177 Ceratophyllum demersum HOM05D003425 ORTHO05D003897 1.6e-21 108.2 233 33.0
QL02p009285 Quercus lobata HOM05D003425 ORTHO05D003897 1.3e-20 105.1 87 59.8
Sc26g0003780 Simmondsia chinensis HOM05D003425 ORTHO05D003897 1.5e-19 101.7 134 42.5
Sc26g0003700 Simmondsia chinensis HOM05D003425 ORTHO05D003897 4.2e-19 100.1 134 41.8
Pp3c14_17850 Physcomitrium patens HOM05D003425 ORTHO05D003897 3.6e-18 97.1 126 39.7
Ah.05g176930 Amaranthus hybridus HOM05D003425 ORTHO05D003897 4.0e-17 93.6 206 33.5
Mapoly0027s0125 Marchantia polymorpha HOM05D003425 ORTHO05D003897 3.4e-16 90.5 89 47.2
Mapoly0027s0188 Marchantia polymorpha HOM05D003425 ORTHO05D003897 4.4e-16 90.1 89 47.2
AagrBONN_evm.TU.Sc2ySwM_362.197 Anthoceros agrestis HOM05D003425 ORTHO05D003897 4.9e-15 86.7 260 29.2
Pp3c1_36100 Physcomitrium patens HOM05D003425 ORTHO05D003897 1.8e-14 84.7 126 39.7
CBR_g22893 Chara braunii HOM05D000019 ORTHO05D000002 2.4e-14 84.3 99 45.5
SMO200G0117 Selaginella moellendorffii HOM05D003425 ORTHO05D003897 7.0e-14 82.8 265 30.6
Rhsim06G0029500 Rhododendron simsii HOM05D003425 ORTHO05D003897 3.3e-11 73.9 67 56.7
HPP92_006412 Vanilla planifolia HOM05D003425 ORTHO05D003897 3.0e-09 67.4 102 40.2
HPP92_003107 Vanilla planifolia HOM05D003425 ORTHO05D003897 9.8e-08 62.4 53 56.6
PGSC0003DMG400015950 Solanum tuberosum HOM05D003425 ORTHO05D003897 7.0e-06 56.2 196 29.6


User provided reference genes

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