Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim05G0097400 Rhododendron simsii HOM05D001206 ORTHO05D005935 7.8e-94 347.1 168 100.0
Rhsim05G0097600 Rhododendron simsii HOM05D001206 ORTHO05D005935 4.5e-33 145.2 125 63.2
vmacro12422 Vaccinium macrocarpon HOM05D001206 ORTHO05D005935 1.1e-31 140.6 102 72.5
vmacro12423 Vaccinium macrocarpon HOM05D001206 ORTHO05D005935 1.1e-31 140.6 102 72.5
Rhsim06G0124000 Rhododendron simsii HOM05D001206 ORTHO05D005935 3.6e-30 135.6 102 68.6
Actinidia12826 Actinidia chinensis HOM05D001206 ORTHO05D005935 5.2e-29 131.7 111 64.0
CSS0050390 Camellia sinensis var. sinensis HOM05D001206 ORTHO05D005935 2.0e-28 129.8 102 64.7
CSS0014076 Camellia sinensis var. sinensis HOM05D001206 ORTHO05D005935 3.4e-28 129.0 102 64.7
FvH4_6g37630 Fragaria vesca HOM05D001206 ORTHO05D005935 1.3e-27 127.1 102 64.7
FAN02G0831 Fragaria x ananassa HOM05D001206 ORTHO05D005935 1.3e-27 127.1 102 64.7
Hma1.2p1_0178F.1_g078230 Hydrangea macrophylla HOM05D001206 ORTHO05D005935 1.7e-27 126.7 111 57.7
Hma1.2p1_3358F.1_g335550 Hydrangea macrophylla HOM05D001206 ORTHO05D005935 1.7e-27 126.7 111 57.7
MSTRG.12835 Avicennia marina HOM05D001206 ORTHO05D005935 2.2e-27 126.3 102 63.7
RcHm_v2.0_Chr2g0150631 Rosa chinensis HOM05D001206 ORTHO05D005935 4.8e-27 125.2 102 63.7
QL08p043357 Quercus lobata HOM05D001206 ORTHO05D005935 1.1e-26 124.0 102 61.8
Cpa.g.sc139.29 Carica papaya HOM05D001206 ORTHO05D005935 2.4e-26 122.9 111 57.7
Lalb_Chr15g0080441 Lupinus albus HOM05D001206 ORTHO05D005935 2.4e-26 122.9 102 59.8
MD09G1156700 Malus domestica HOM05D001206 ORTHO05D005935 2.4e-26 122.9 102 61.8
MD17G1143200 Malus domestica HOM05D001206 ORTHO05D005935 2.4e-26 122.9 102 61.8
FAN14G2675 Fragaria x ananassa HOM05D001206 ORTHO05D005935 5.4e-26 121.7 102 62.7
Prupe.3G169900 Prunus persica HOM05D001206 ORTHO05D005935 9.1e-26 120.9 102 59.8
Dinv06275 Davidia involucrata HOM05D001206 ORTHO05D005935 1.6e-25 120.2 111 55.9
Gohir.A06G169500 Gossypium hirsutum HOM05D001206 ORTHO05D005935 2.7e-25 119.4 111 52.3
CDE05G3011 Ceratophyllum demersum HOM05D001206 ORTHO05D005935 3.5e-25 119.0 90 63.3
Gohir.D06G177200 Gossypium hirsutum HOM05D001206 ORTHO05D005935 3.5e-25 119.0 98 59.2
Gorai.N008100 Gossypium raimondii HOM05D001206 ORTHO05D005935 3.5e-25 119.0 98 59.2
Lsat_1_v5_gn_8_31840 Lactuca sativa HOM05D001206 ORTHO05D005935 3.5e-25 119.0 90 65.6
Haze_13462 Corylus avellana HOM05D001206 ORTHO05D005935 4.5e-25 118.6 102 59.8
CANSAT64G1074 Cannabis sativa HOM05D001206 ORTHO05D005935 5.9e-25 118.2 111 55.0
Oeu032122.1 Olea europaea HOM05D001206 ORTHO05D005935 5.9e-25 118.2 111 52.3
Thecc.10G113900 Theobroma cacao HOM05D001206 ORTHO05D005935 5.9e-25 118.2 95 58.9
Nitab4.5_0002027g0090 Nicotiana tabacum HOM05D001206 ORTHO05D005935 7.7e-25 117.9 148 43.9
PGR142G3322 Punica granatum HOM05D001206 ORTHO05D005935 1.0e-24 117.5 111 52.3
Ah.01g016080 Amaranthus hybridus HOM05D001206 ORTHO05D005935 1.3e-24 117.1 111 53.2
Eucgr.K01190 Eucalyptus grandis HOM05D001206 ORTHO05D005935 1.3e-24 117.1 111 55.9
DCAR_013291 Daucus carota HOM05D001206 ORTHO05D005935 1.7e-24 116.7 111 54.1
AUR62004905 Chenopodium quinoa HOM05D001206 ORTHO05D005935 2.2e-24 116.3 111 50.5
TWI38G0487 Tripterygium wilfordii HOM05D001206 ORTHO05D005935 3.8e-24 115.5 102 55.9
AUR62032754 Chenopodium quinoa HOM05D001206 ORTHO05D005935 5.0e-24 115.2 102 53.9
HanXRQChr13g0387351 Helianthus annuus HOM05D001206 ORTHO05D005935 6.5e-24 114.8 109 54.1
MBI05_g35447_MAGBIO Magnolia biondii HOM05D001206 ORTHO05D005935 6.5e-24 114.8 93 60.2
EL10Ac9g21024 Beta vulgaris HOM05D001206 ORTHO05D005935 8.5e-24 114.4 111 51.4
SalBow7G4591 Salvia bowleyana HOM05D001206 ORTHO05D005935 8.5e-24 114.4 98 60.2
Hund07738 Selenicereus undatus HOM05D001206 ORTHO05D005935 8.5e-24 114.4 102 57.8
SGA_v2.0_scaffold4G02113 Striga asiatica HOM05D001206 ORTHO05D005935 8.5e-24 114.4 98 59.2
Aqoxy3G00674 Aquilegia oxysepala HOM05D001206 ORTHO05D005935 1.5e-23 113.6 90 60.0
Migut.H02113 Erythranthe guttata HOM05D001206 ORTHO05D005935 1.5e-23 113.6 98 59.2
Nn6g34432 Nelumbo nucifera HOM05D001206 ORTHO05D005935 1.5e-23 113.6 90 63.3
Peaxi162Scf00035g03126 Petunia axillaris HOM05D001206 ORTHO05D005935 1.5e-23 113.6 102 56.9
GSVIVG01020788001 Vitis vinifera HOM05D001206 ORTHO05D005935 2.5e-23 112.8 102 56.9
Atru.chr6.3565 Acer truncatum HOM05D001206 ORTHO05D005935 3.2e-23 112.5 102 55.9
unitig_22.g6850 Utricularia gibba HOM05D001206 ORTHO05D005935 3.2e-23 112.5 90 62.2
Sc21g0004390 Simmondsia chinensis HOM05D001206 ORTHO05D005935 4.2e-23 112.1 100 55.0
Nitab4.5_0001402g0160 Nicotiana tabacum HOM05D001206 ORTHO05D005935 5.5e-23 111.7 96 59.4
Solyc10g007840.3 Solanum lycopersicum HOM05D001206 ORTHO05D005935 5.5e-23 111.7 90 61.1
Sopen10g003740 Solanum pennellii HOM05D001206 ORTHO05D005935 5.5e-23 111.7 90 61.1
Potri.018G086350 Populus trichocarpa HOM05D001206 ORTHO05D005935 7.2e-23 111.3 102 54.9
SEGI_06909 Sequoiadendron giganteum HOM05D001206 ORTHO05D005935 7.2e-23 111.3 111 50.5
BcaC04g21423 Brassica carinata HOM05D001206 ORTHO05D005935 9.4e-23 110.9 102 55.9
A09p24920 Brassica napus HOM05D001206 ORTHO05D005935 9.4e-23 110.9 102 55.9
C09p31950 Brassica napus HOM05D001206 ORTHO05D005935 9.4e-23 110.9 102 55.9
BolC9t56049H Brassica oleracea HOM05D001206 ORTHO05D005935 9.4e-23 110.9 102 55.9
BraA09t38080Z Brassica rapa HOM05D001206 ORTHO05D005935 9.4e-23 110.9 102 55.9
CiPaw.03G196100 Carya illinoinensis HOM05D001206 ORTHO05D005935 9.4e-23 110.9 100 58.0
TAR629G1684 Trochodendron aralioides HOM05D001206 ORTHO05D005935 9.4e-23 110.9 90 60.0
MELO3C014457.2 Cucumis melo HOM05D001206 ORTHO05D005935 1.2e-22 110.5 102 56.9
ClCG09G022260 Citrullus lanatus HOM05D001206 ORTHO05D005935 1.6e-22 110.2 102 54.9
Ciclev10014821m.g Citrus clementina HOM05D001206 ORTHO05D005935 1.6e-22 110.2 102 55.9
Aa31LG2G6650 Aethionema arabicum HOM05D001206 ORTHO05D005935 2.1e-22 109.8 102 54.9
Sed0006625 Sechium edule HOM05D001206 ORTHO05D005935 2.1e-22 109.8 102 54.9
PGSC0003DMG401021239 Solanum tuberosum HOM05D001206 ORTHO05D005935 2.1e-22 109.8 90 60.0
BcaB07g30635 Brassica carinata HOM05D001206 ORTHO05D005935 2.7e-22 109.4 102 54.9
CsaV3_6G037950 Cucumis sativus L. HOM05D004204 ORTHO05D005935 2.7e-22 109.4 102 55.9
Glyma.08G311400 Glycine max HOM05D001206 ORTHO05D005935 3.6e-22 109.0 100 54.0
FvH4_4g16160 Fragaria vesca HOM05D001206 ORTHO05D005935 6.1e-22 108.2 102 57.8
Manes.01G129100 Manihot esculenta HOM05D001206 ORTHO05D005935 8.0e-22 107.8 102 52.9
Sabra18G0074600 Salix brachista HOM05D003301 ORTHO05D003665 8.0e-22 107.8 111 50.5
Ca_14632_v3 Cicer arietinum L. HOM05D001206 ORTHO05D005935 1.0e-21 107.5 98 55.1
AagrBONN_evm.TU.Sc2ySwM_368.1898 Anthoceros agrestis HOM05D001206 ORTHO05D005935 1.4e-21 107.1 103 49.5
Psat5g186880 Pisum sativum HOM05D001206 ORTHO05D005935 1.4e-21 107.1 95 54.7
Zm00001eb068770 Zea mays HOM05D001206 ORTHO05D005935 1.8e-21 106.7 105 52.4
arahy.Tifrunner.gnm1.ann1.BZT8G9 Arachis hypogaea HOM05D001206 ORTHO05D005935 2.3e-21 106.3 95 54.7
arahy.Tifrunner.gnm1.ann1.DXFN4R Arachis hypogaea HOM05D001206 ORTHO05D005935 2.3e-21 106.3 95 54.7
Lj6g0018418 Lotus japonicus HOM05D001206 ORTHO05D005935 2.3e-21 106.3 102 51.0
Os04g0643200 Oryza sativa ssp. japonica HOM05D001206 ORTHO05D005935 2.3e-21 106.3 105 52.4
PSO017G2524 Papaver somniferum HOM05D001206 ORTHO05D005935 2.3e-21 106.3 90 56.7
Phvul.006G036200 Phaseolus vulgaris HOM05D001206 ORTHO05D005935 2.3e-21 106.3 111 47.7
Medtr3g048950 Medicago truncatula HOM05D001206 ORTHO05D005935 3.0e-21 105.9 95 53.7
PSO478G1473 Papaver somniferum HOM05D001206 ORTHO05D005935 3.0e-21 105.9 90 56.7
Sp2g14920 Schrenkiella parvula HOM05D001206 ORTHO05D005935 4.0e-21 105.5 102 52.0
THA.LOC104805240 Tarenaya hassleriana HOM05D001206 ORTHO05D005935 4.0e-21 105.5 102 54.9
CARHR288520 Cardamine hirsuta HOM05D001206 ORTHO05D005935 5.2e-21 105.1 102 51.0
Thhalv10012940m.g Eutrema salsugineum HOM05D001206 ORTHO05D005935 5.2e-21 105.1 102 52.0
THA.LOC104824040 Tarenaya hassleriana HOM05D001206 ORTHO05D005935 6.8e-21 104.8 102 53.9
AL5G14200 Arabidopsis lyrata HOM05D001206 ORTHO05D005935 8.8e-21 104.4 102 52.0
FvH4_4g05790 Fragaria vesca HOM05D001206 ORTHO05D005935 8.8e-21 104.4 104 53.8
AT3G25660 Arabidopsis thaliana HOM05D001206 ORTHO05D005935 2.0e-20 103.2 102 51.0
Carub.0005s0348 Capsella rubella HOM05D001206 ORTHO05D005935 2.0e-20 103.2 102 51.0
FAN06G1107 Fragaria x ananassa HOM05D001206 ORTHO05D005935 2.6e-20 102.8 105 53.3
FvH4_5g31820 Fragaria vesca HOM05D001206 ORTHO05D005935 5.7e-20 101.7 80 62.5
FAN18G2655 Fragaria x ananassa HOM05D001206 ORTHO05D005935 5.7e-20 101.7 80 62.5
Mapoly0029s0077 Marchantia polymorpha HOM05D001206 ORTHO05D005935 5.7e-20 101.7 93 53.8
CARHR260190 Cardamine hirsuta HOM05D001206 ORTHO05D005935 1.7e-19 100.1 103 50.5
Pp3c27_1950 Physcomitrium patens HOM05D001206 ORTHO05D005935 1.7e-19 100.1 124 41.1
ATR1096G083 Amborella trichopoda HOM05D001206 ORTHO05D005935 2.2e-19 99.8 90 55.6
FvH4_4g03380 Fragaria vesca HOM05D001206 ORTHO05D005935 8.3e-19 97.8 80 61.2
SMO118G0181 Selaginella moellendorffii HOM05D001206 ORTHO05D005935 1.1e-18 97.4 90 47.8
FvH4_7g03390 Fragaria vesca HOM05D001206 ORTHO05D005935 2.4e-18 96.3 80 58.8
Pp3c16_16670 Physcomitrium patens HOM05D001206 ORTHO05D005935 4.1e-18 95.5 124 41.1
FAN25G3564 Fragaria x ananassa HOM05D001206 ORTHO05D005935 2.7e-17 92.8 80 61.2
CBR_g12438 Chara braunii HOM05D001206 ORTHO05D005935 1.3e-16 90.5 89 47.2
CDE05G0826 Ceratophyllum demersum HOM05D001206 ORTHO05D005935 3.8e-16 89.0 70 62.9
Cre10.g439400 Chlamydomonas reinhardtii HOM05D001206 ORTHO05D005935 4.7e-14 82.0 90 44.4
PRCOL_00000262 Prasinoderma coloniale HOM05D001206 ORTHO05D005935 1.4e-10 70.5 88 45.5
vmacro00702 Vaccinium macrocarpon HOM05D000618 ORTHO05D000454 1.4e-10 70.5 35 82.9
MCO01G356 Micromonas commoda HOM05D001206 ORTHO05D005935 3.2e-10 69.3 102 37.3
CSS0024244 Camellia sinensis var. sinensis HOM05D000618 ORTHO05D000454 7.0e-10 68.2 73 43.8
Rhsim05G0098400 Rhododendron simsii HOM05D001206 ORTHO05D339266 1.2e-09 67.4 40 82.5
Rhsim09G0010500 Rhododendron simsii HOM05D000618 ORTHO05D000454 1.7e-08 63.5 49 63.3
FvH4_6g33420 Fragaria vesca HOM05D001206 ORTHO05D005935 5.0e-08 62.0 46 60.9
HanXRQChr01g0013891 Helianthus annuus HOM05D000618 ORTHO05D000454 5.0e-08 62.0 34 67.6
Dinv07058 Davidia involucrata HOM05D000618 ORTHO05D000454 6.6e-08 61.6 35 74.3
Cfa026647 Carpinus fangiana HOM05D001206 ORTHO05D005935 8.6e-08 61.2 83 41.0
Hund03200 Selenicereus undatus HOM05D000618 ORTHO05D000454 1.9e-07 60.1 42 61.9
Nitab4.5_0000122g0060 Nicotiana tabacum HOM05D000618 ORTHO05D000454 3.3e-07 59.3 36 66.7
MCO11G436 Micromonas commoda HOM05D001206 ORTHO05D005935 4.3e-07 58.9 49 51.0
Nn1g09636 Nelumbo nucifera HOM05D000618 ORTHO05D000454 1.2e-06 57.4 74 39.2
TAR365G0713 Trochodendron aralioides HOM05D000618 ORTHO05D000454 1.2e-06 57.4 40 62.5
TAR636G0930 Trochodendron aralioides HOM05D000618 ORTHO05D000454 1.2e-06 57.4 36 69.4
Cc00_g05660 Coffea canephora HOM05D001375 ORTHO05D001222 2.8e-06 56.2 91 38.5
Lsat_1_v5_gn_9_61500 Lactuca sativa HOM05D000618 ORTHO05D000454 2.8e-06 56.2 34 61.8
Cc00_g35910 Coffea canephora HOM05D001375 ORTHO05D001222 3.6e-06 55.8 91 38.5
Cc00_g05620 Coffea canephora HOM05D001375 ORTHO05D001222 4.7e-06 55.5 91 38.5
Cc00_g05690 Coffea canephora HOM05D001375 ORTHO05D001222 4.7e-06 55.5 91 37.4
Cc00_g26370 Coffea canephora HOM05D001375 ORTHO05D001222 4.7e-06 55.5 91 37.4
Cc02_g29320 Coffea canephora HOM05D001375 ORTHO05D001222 4.7e-06 55.5 92 39.1
PSO675G4718 Papaver somniferum HOM05D000618 ORTHO05D000454 4.7e-06 55.5 41 58.5
PSO732G0414 Papaver somniferum HOM05D000618 ORTHO05D000454 4.7e-06 55.5 41 58.5
Pp3s32_288 Physcomitrium patens HOM05D001206 ORTHO05D005935 6.2e-06 55.1 97 29.9


User provided reference genes

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