Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim05G0090000 Rhododendron simsii HOM05D005520 ORTHO05D006633 1.8e-116 422.5 204 100.0
CSS0014981 Camellia sinensis var. sinensis HOM05D005520 ORTHO05D006633 2.1e-85 319.3 202 75.7
Actinidia34369 Actinidia chinensis HOM05D005520 ORTHO05D006633 1.3e-82 310.1 204 76.5
Dinv42222 Davidia involucrata HOM05D005520 ORTHO05D006633 2.1e-80 302.8 204 73.5
Rhsim11G0154200 Rhododendron simsii HOM05D005520 ORTHO05D006633 1.4e-76 290.0 196 73.5
Haze_10245 Corylus avellana HOM05D005520 ORTHO05D006633 4.2e-73 278.5 204 66.7
Cfa004647 Carpinus fangiana HOM05D005520 ORTHO05D006633 5.4e-73 278.1 200 68.0
Dinv15795 Davidia involucrata HOM05D005520 ORTHO05D006633 9.3e-73 277.3 200 70.5
CiPaw.06G167100 Carya illinoinensis HOM05D005520 ORTHO05D006633 1.3e-69 266.9 200 64.0
GSVIVG01037859001 Vitis vinifera HOM05D005520 ORTHO05D006633 1.6e-69 266.5 201 67.7
MD10G1103100 Malus domestica HOM05D005520 ORTHO05D006633 4.8e-69 265.0 202 64.9
Eucgr.G01264 Eucalyptus grandis HOM05D005520 ORTHO05D006633 1.8e-68 263.1 200 65.5
arahy.Tifrunner.gnm1.ann1.ZQ2RMB Arachis hypogaea HOM05D005520 ORTHO05D006633 3.1e-68 262.3 200 65.0
CAN.G689.10 Capsicum annuum HOM05D005520 ORTHO05D006633 4.0e-68 261.9 203 64.0
THA.LOC104825832 Tarenaya hassleriana HOM05D005520 ORTHO05D006633 4.0e-68 261.9 195 68.2
Prupe.8G141400 Prunus persica HOM05D005520 ORTHO05D006633 6.9e-68 261.2 204 64.7
Sc18g0003610 Simmondsia chinensis HOM05D005520 ORTHO05D006633 6.9e-68 261.2 204 65.2
Sopen11g029630 Solanum pennellii HOM05D005520 ORTHO05D006633 6.9e-68 261.2 199 65.3
MSTRG.16689 Avicennia marina HOM05D005520 ORTHO05D006633 9.0e-68 260.8 204 64.7
Solyc11g071960.2 Solanum lycopersicum HOM05D005520 ORTHO05D006633 9.0e-68 260.8 199 64.8
EL10Ac8g19365 Beta vulgaris HOM05D005520 ORTHO05D006633 2.0e-67 259.6 200 64.0
Migut.F01600 Erythranthe guttata HOM05D005520 ORTHO05D006633 2.0e-67 259.6 208 61.5
TWI14G1052 Tripterygium wilfordii HOM05D005520 ORTHO05D006633 2.0e-67 259.6 198 63.1
BolC3t21249H Brassica oleracea HOM05D005520 ORTHO05D006633 4.4e-67 258.5 198 63.1
Manes.10G081300 Manihot esculenta HOM05D005520 ORTHO05D006633 7.6e-67 257.7 193 65.8
RcHm_v2.0_Chr6g0253041 Rosa chinensis HOM05D005520 ORTHO05D006633 9.9e-67 257.3 199 64.3
Carub.0001s3909 Capsella rubella HOM05D005520 ORTHO05D006633 1.7e-66 256.5 198 63.6
C03p89340 Brassica napus HOM05D005520 ORTHO05D006633 2.2e-66 256.1 198 62.1
Lj3g0017538 Lotus japonicus HOM05D005520 ORTHO05D006633 2.9e-66 255.8 200 64.5
Potri.009G090200 Populus trichocarpa HOM05D005520 ORTHO05D006633 2.9e-66 255.8 201 62.7
MD05G1097000 Malus domestica HOM05D005520 ORTHO05D006633 6.4e-66 254.6 204 61.8
TPR.G18583 Trifolium pratense HOM05D005520 ORTHO05D006633 6.4e-66 254.6 199 63.8
Ciclev10029310m.g Citrus clementina HOM05D005520 ORTHO05D006633 8.4e-66 254.2 198 65.2
RhsimUnG0125400 Rhododendron simsii HOM05D005520 ORTHO05D006633 8.4e-66 254.2 194 68.6
Sp1g36760 Schrenkiella parvula HOM05D005520 ORTHO05D006633 8.4e-66 254.2 198 63.6
PGR042G2710 Punica granatum HOM05D005520 ORTHO05D006633 1.9e-65 253.1 198 62.6
Thhalv10011740m.g Eutrema salsugineum HOM05D005520 ORTHO05D006633 3.2e-65 252.3 199 64.8
arahy.Tifrunner.gnm1.ann1.DF92AY Arachis hypogaea HOM05D005520 ORTHO05D006633 4.2e-65 251.9 215 60.5
Sabra09G0069800 Salix brachista HOM05D005520 ORTHO05D006633 5.4e-65 251.5 196 61.2
AL1G57420 Arabidopsis lyrata HOM05D005520 ORTHO05D006633 9.3e-65 250.8 195 63.1
Duzib052G0352 Durio zibethinus HOM05D005520 ORTHO05D006633 9.3e-65 250.8 192 65.6
Lalb_Chr24g0402091 Lupinus albus HOM05D005520 ORTHO05D006633 1.6e-64 250.0 199 61.3
Peaxi162Scf00429g00622 Petunia axillaris HOM05D005520 ORTHO05D006633 2.1e-64 249.6 195 66.7
TPR.G14598 Trifolium pratense HOM05D005520 ORTHO05D006633 3.5e-64 248.8 199 61.3
Gohir.D04G160500 Gossypium hirsutum HOM05D005520 ORTHO05D006633 4.6e-64 248.4 192 64.6
Gorai.012G148200 Gossypium raimondii HOM05D005520 ORTHO05D006633 4.6e-64 248.4 192 64.6
BraA08t32384Z Brassica rapa HOM05D005520 ORTHO05D006633 1.0e-63 247.3 202 58.9
A08p03510 Brassica napus HOM05D005520 ORTHO05D006633 1.7e-63 246.5 202 58.4
Gohir.A04G118800 Gossypium hirsutum HOM05D005520 ORTHO05D006633 1.7e-63 246.5 192 63.5
Medtr8g045480 Medicago truncatula HOM05D005520 ORTHO05D006633 3.0e-63 245.7 199 61.3
Nitab4.5_0008364g0030 Nicotiana tabacum HOM05D005520 ORTHO05D006633 3.0e-63 245.7 203 61.1
Phvul.003G276100 Phaseolus vulgaris HOM05D005520 ORTHO05D006633 3.0e-63 245.7 199 62.3
QL11p031741 Quercus lobata HOM05D005520 ORTHO05D006633 3.0e-63 245.7 269 51.3
Cpa.g.sc106.74 Carica papaya HOM05D005520 ORTHO05D006633 3.9e-63 245.4 213 59.6
VMungo0251G2197 Vigna mungo HOM05D005520 ORTHO05D006633 5.1e-63 245.0 199 62.3
Nitab4.5_0000158g0130 Nicotiana tabacum HOM05D005520 ORTHO05D006633 2.5e-62 242.7 192 63.5
CARHR039940 Cardamine hirsuta HOM05D005520 ORTHO05D006633 4.3e-62 241.9 205 58.5
HanXRQChr03g0069991 Helianthus annuus HOM05D005520 ORTHO05D006633 4.3e-62 241.9 198 61.6
unitig_37.g12800 Utricularia gibba HOM05D005520 ORTHO05D006633 5.6e-62 241.5 208 60.6
SalBow6G6323 Salvia bowleyana HOM05D005520 ORTHO05D006633 7.4e-62 241.1 222 58.1
Medtr1g050465 Medicago truncatula HOM05D005520 ORTHO05D006633 1.3e-61 240.4 200 60.5
Psat4g180760 Pisum sativum HOM05D005520 ORTHO05D006633 2.1e-61 239.6 200 60.5
SalBow6G1186 Salvia bowleyana HOM05D005520 ORTHO05D006633 2.1e-61 239.6 222 59.5
COL.COLO4_32538 Corchorus olitorius HOM05D005520 ORTHO05D006633 3.6e-61 238.8 218 59.6
DCAR_021961 Daucus carota HOM05D005520 ORTHO05D006633 3.6e-61 238.8 198 61.1
FAN20G2059 Fragaria x ananassa HOM05D005520 ORTHO05D006633 8.1e-61 237.7 218 57.3
Lsat_1_v5_gn_9_112480 Lactuca sativa HOM05D005520 ORTHO05D006633 2.4e-60 236.1 206 57.8
Lj5A217G90 Lonicera japonica HOM05D005520 ORTHO05D006633 5.3e-60 235.0 125 84.8
Gorai.013G049600 Gossypium raimondii HOM05D005520 ORTHO05D006633 6.9e-60 234.6 197 62.4
PSO541G2579 Papaver somniferum HOM05D005520 ORTHO05D006633 9.0e-60 234.2 197 57.4
Gohir.D13G044800 Gossypium hirsutum HOM05D005520 ORTHO05D006633 2.6e-59 232.6 197 61.9
PGSC0003DMG400002983 Solanum tuberosum HOM05D005520 ORTHO05D006633 4.5e-59 231.9 134 79.9
PSO675G3202 Papaver somniferum HOM05D005520 ORTHO05D006633 5.8e-59 231.5 196 57.7
CDE04G3180 Ceratophyllum demersum HOM05D005520 ORTHO05D006633 7.6e-59 231.1 195 55.9
SGA_v2.0_scaffold225G43026 Striga asiatica HOM05D005520 ORTHO05D006633 7.6e-59 231.1 148 72.3
Lj4g0000264 Lotus japonicus HOM05D005520 ORTHO05D006633 2.2e-58 229.6 200 59.0
Cc02_g19680 Coffea canephora HOM05D005520 ORTHO05D006633 3.8e-58 228.8 256 49.6
Sed0007262 Sechium edule HOM05D005520 ORTHO05D006633 3.8e-58 228.8 200 59.5
TAR625G0105 Trochodendron aralioides HOM05D000641 ORTHO05D006633 6.4e-58 228.0 130 77.7
ECA240G0181 Erigeron canadensis HOM05D005520 ORTHO05D006633 3.5e-56 222.2 122 80.3
RcHm_v2.0_Chr6g0253051 Rosa chinensis HOM05D005520 ORTHO05D006633 4.6e-56 221.9 122 82.0
Actinidia27983 Actinidia chinensis HOM05D005520 ORTHO05D006633 7.9e-56 221.1 204 57.8
Migut.B00429 Erythranthe guttata HOM05D005520 ORTHO05D009373 3.0e-55 219.2 179 60.9
Migut.B00427 Erythranthe guttata HOM05D005520 ORTHO05D006633 3.9e-55 218.8 129 74.4
BcaB04g17288 Brassica carinata HOM05D005520 ORTHO05D006633 1.5e-54 216.9 208 55.8
CANSAT25G2379 Cannabis sativa HOM05D005520 ORTHO05D006633 1.9e-54 216.5 198 57.1
HPP92_023672 Vanilla planifolia HOM05D005520 ORTHO05D006633 1.3e-53 213.8 200 54.5
Zm00001eb007440 Zea mays HOM05D005520 ORTHO05D006633 1.3e-53 213.8 198 54.0
HPP92_023689 Vanilla planifolia HOM05D005520 ORTHO05D006633 2.8e-53 212.6 200 54.5
ClCG10G010520 Citrullus lanatus HOM05D005520 ORTHO05D006633 3.7e-53 212.2 198 54.5
CDE07G0521 Ceratophyllum demersum HOM05D005520 ORTHO05D006633 6.2e-53 211.5 124 71.8
FAN15G3606 Fragaria x ananassa HOM05D005520 ORTHO05D006633 6.2e-53 211.5 198 57.1
Glyma.13G199600 Glycine max HOM05D005520 ORTHO05D006633 1.8e-52 209.9 199 54.8
Aa31LG10G4210 Aethionema arabicum HOM05D001821 ORTHO05D006633 5.3e-52 208.4 189 57.7
FAN24G1644 Fragaria x ananassa HOM05D005520 ORTHO05D006633 1.0e-50 204.1 207 55.1
AT1G49880 Arabidopsis thaliana HOM05D005520 ORTHO05D006633 9.3e-49 197.6 163 61.3
SMO172G0176 Selaginella moellendorffii HOM05D005520 ORTHO05D006633 1.1e-46 190.7 114 72.8
Pp3c2_36820 Physcomitrium patens HOM05D005520 ORTHO05D006633 3.3e-46 189.1 114 74.6
SEGI_34662 Sequoiadendron giganteum HOM05D005520 ORTHO05D006633 4.3e-46 188.7 127 63.8
RcHm_v2.0_Chr6g0253221 Rosa chinensis HOM05D005520 ORTHO05D006633 9.6e-46 187.6 127 71.7
Oeu009678.2 Olea europaea HOM05D005520 ORTHO05D006633 1.4e-44 183.7 253 44.3
Atru.chr5.2403 Acer truncatum HOM05D005520 ORTHO05D006633 3.1e-44 182.6 98 83.7
Mapoly0036s0053 Marchantia polymorpha HOM05D005520 ORTHO05D006633 4.1e-44 182.2 165 51.5
Psat7g087120 Pisum sativum HOM05D005520 ORTHO05D006633 6.9e-44 181.4 172 55.8
AUR62022505 Chenopodium quinoa HOM05D005520 ORTHO05D006633 2.5e-41 172.9 182 52.7
CBR_g2851 Chara braunii HOM05D005520 ORTHO05D006633 4.2e-41 172.2 113 59.3
Psat6g139520 Pisum sativum HOM05D005520 ORTHO05D006633 5.5e-41 171.8 172 53.5
vmacro01971 Vaccinium macrocarpon HOM05D005520 ORTHO05D006633 6.1e-40 168.3 127 63.0
Pp3c19_18310 Physcomitrium patens HOM05D005520 ORTHO05D006633 8.7e-39 164.5 111 64.9
CBR_g31027 Chara braunii HOM05D005520 ORTHO05D006633 5.7e-38 161.8 113 57.5
Ca_24141_v3 Cicer arietinum L. HOM05D005520 ORTHO05D006633 1.5e-35 153.7 164 52.4
FvH4_2g03990 Fragaria vesca HOM05D005520 ORTHO05D006633 4.5e-35 152.1 138 60.9
Thecc.02G114500 Theobroma cacao HOM05D005520 ORTHO05D006633 2.1e-32 143.3 138 58.7
Cre03.g173200 Chlamydomonas reinhardtii HOM05D005520 ORTHO05D006633 6.1e-32 141.7 102 58.8
Aqoxy6G02716 Aquilegia oxysepala HOM05D005520 ORTHO05D006633 5.1e-31 138.7 158 50.0
Potri.001G296000 Populus trichocarpa HOM05D005520 ORTHO05D006633 5.1e-31 138.7 206 39.8
CSS0022898 Camellia sinensis var. sinensis HOM05D005520 ORTHO05D006633 9.7e-30 134.4 100 64.0
Hund12620 Selenicereus undatus HOM05D005520 ORTHO05D006633 6.3e-29 131.7 275 35.3
CBR_g38847 Chara braunii HOM05D005520 ORTHO05D006633 1.4e-28 130.6 106 50.9
Nn1g07564 Nelumbo nucifera HOM05D005520 ORTHO05D006633 9.1e-28 127.9 142 52.1
Medtr0857s0010 Medicago truncatula HOM05D005520 ORTHO05D006633 1.2e-27 127.5 63 87.3
Haze_26784 Corylus avellana HOM05D005520 ORTHO05D006633 1.1e-25 120.9 100 45.0
PRCOL_00001319 Prasinoderma coloniale HOM05D000442 ORTHO05D001718 4.2e-25 119.0 106 48.1
MCO01G292 Micromonas commoda HOM05D005520 ORTHO05D006633 7.2e-25 118.2 96 52.1
Ciclev10029975m.g Citrus clementina HOM05D005520 ORTHO05D006633 2.3e-23 113.2 58 84.5
Aqoxy6G02727 Aquilegia oxysepala HOM05D005520 ORTHO05D006633 3.9e-23 112.5 57 80.7
Cre14.g633000 Chlamydomonas reinhardtii HOM05D005520 ORTHO05D006633 2.6e-22 109.8 95 47.4
MCO01G319 Micromonas commoda HOM05D005520 ORTHO05D006633 3.7e-21 105.9 104 48.1
Glyma.15G237900 Glycine max HOM05D005520 ORTHO05D006633 6.3e-21 105.1 116 54.3
Cfa024926 Carpinus fangiana HOM05D000137 ORTHO05D122446 1.0e-18 97.8 93 40.9
MELO3C017991.2 Cucumis melo HOM05D005520 ORTHO05D006633 7.2e-17 91.7 120 45.8
ATR0165G041 Amborella trichopoda HOM05D005520 ORTHO05D006633 2.3e-15 86.7 122 40.2
SHI05087 Sapria himalayana HOM05D005520 ORTHO05D006633 1.4e-12 77.4 74 48.6
Os03g0206300 Oryza sativa ssp. japonica HOM05D005520 ORTHO05D006633 1.3e-10 70.9 50 58.0
CsaV3_4G000440 Cucumis sativus L. HOM05D005520 ORTHO05D006633 1.7e-10 70.5 119 39.5
TPR.G17607 Trifolium pratense HOM05D005520 ORTHO05D006633 1.7e-10 70.5 100 46.0
AL1G58430 Arabidopsis lyrata HOM05D005520 ORTHO05D006633 5.0e-10 68.9 116 37.1
A06p03510 Brassica napus HOM05D005520 ORTHO05D006633 7.2e-09 65.1 36 69.4
BraA06t23559Z Brassica rapa HOM05D005520 ORTHO05D006633 7.2e-09 65.1 36 69.4
Aqoxy6G02726 Aquilegia oxysepala HOM05D000001 ORTHO05D077907 5.2e-07 58.9 109 36.7
Atru.chr9.1169 Acer truncatum HOM05D003028 ORTHO05D037933 2.6e-06 56.6 34 76.5


User provided reference genes

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