Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim05G0089900 Rhododendron simsii HOM05D006153 ORTHO05D007701 8.6e-77 290.4 167 100.0
BcaC05g28465 Brassica carinata HOM05D006153 ORTHO05D007701 1.9e-15 86.7 57 66.7
A05p30090 Brassica napus HOM05D006153 ORTHO05D007701 1.9e-15 86.7 57 66.7
C05p45510 Brassica napus HOM05D006153 ORTHO05D007701 1.9e-15 86.7 57 66.7
BolC5t33274H Brassica oleracea HOM05D006153 ORTHO05D007701 1.9e-15 86.7 57 66.7
BraA05t21849Z Brassica rapa HOM05D006153 ORTHO05D007701 1.9e-15 86.7 57 66.7
Actinidia34374 Actinidia chinensis HOM05D006153 ORTHO05D007701 5.5e-15 85.1 51 70.6
BcaB06g26014 Brassica carinata HOM05D006153 ORTHO05D007701 5.5e-15 85.1 57 64.9
Sp3g17600 Schrenkiella parvula HOM05D006153 ORTHO05D007701 7.2e-15 84.7 57 66.7
GSVIVG01037871001 Vitis vinifera HOM05D006153 ORTHO05D007701 7.2e-15 84.7 65 53.8
GSVIVG01037872001 Vitis vinifera HOM05D006153 ORTHO05D007701 7.2e-15 84.7 58 60.3
BcaB04g20696 Brassica carinata HOM05D006153 ORTHO05D007701 1.2e-14 84.0 57 64.9
CSS0010428 Camellia sinensis var. sinensis HOM05D006153 ORTHO05D007701 1.6e-14 83.6 60 61.7
Thhalv10021914m.g Eutrema salsugineum HOM05D006153 ORTHO05D007701 3.6e-14 82.4 53 69.8
GSVIVG01037873001 Vitis vinifera HOM05D006153 ORTHO05D007701 4.7e-14 82.0 54 64.8
BcaC09g48920 Brassica carinata HOM05D006153 ORTHO05D007701 8.0e-14 81.3 57 64.9
C01p44580 Brassica napus HOM05D006153 ORTHO05D007701 8.0e-14 81.3 57 64.9
BcaB04g20697 Brassica carinata HOM05D006153 ORTHO05D007701 1.0e-13 80.9 58 63.8
Nitab4.5_0012681g0010 Nicotiana tabacum HOM05D006153 ORTHO05D007701 1.0e-13 80.9 50 68.0
ATR0030G019 Amborella trichopoda HOM05D006153 ORTHO05D007701 1.4e-13 80.5 58 58.6
A01p35140 Brassica napus HOM05D006153 ORTHO05D007701 1.4e-13 80.5 57 64.9
BraA01t03596Z Brassica rapa HOM05D006153 ORTHO05D007701 1.4e-13 80.5 57 64.9
Gohir.D13G044400 Gossypium hirsutum HOM05D006153 ORTHO05D007701 1.4e-13 80.5 53 67.9
Gorai.013G049200 Gossypium raimondii HOM05D006153 ORTHO05D007701 1.4e-13 80.5 53 67.9
Actinidia27982 Actinidia chinensis HOM05D006153 ORTHO05D007701 1.8e-13 80.1 59 62.7
BolC1t04422H Brassica oleracea HOM05D006153 ORTHO05D007701 3.0e-13 79.3 57 63.2
Nitab4.5_0002017g0030 Nicotiana tabacum HOM05D006153 ORTHO05D007701 3.0e-13 79.3 50 66.0
Peaxi162Scf00152g00320 Petunia axillaris HOM05D006153 ORTHO05D007701 3.0e-13 79.3 54 61.1
A01p35130 Brassica napus HOM05D006153 ORTHO05D007701 4.0e-13 79.0 57 63.2
BraA01t03595Z Brassica rapa HOM05D006153 ORTHO05D007701 4.0e-13 79.0 57 63.2
Dinv42217 Davidia involucrata HOM05D006153 ORTHO05D007701 6.7e-13 78.2 54 61.1
MD10G1102200 Malus domestica HOM05D006153 ORTHO05D007701 6.7e-13 78.2 48 66.7
Nitab4.5_0001105g0220 Nicotiana tabacum HOM05D006153 ORTHO05D007701 6.7e-13 78.2 52 63.5
Nitab4.5_0004685g0060 Nicotiana tabacum HOM05D006153 ORTHO05D007701 6.7e-13 78.2 52 63.5
PGR042G3678 Punica granatum HOM05D006153 ORTHO05D007701 6.7e-13 78.2 49 65.3
arahy.Tifrunner.gnm1.ann1.EHR7LK Arachis hypogaea HOM05D006153 ORTHO05D007701 8.8e-13 77.8 42 73.8
Manes.07G064400 Manihot esculenta HOM05D006153 ORTHO05D007701 8.8e-13 77.8 61 57.4
Peaxi162Scf00016g00267 Petunia axillaris HOM05D006153 ORTHO05D007701 8.8e-13 77.8 54 64.8
Lalb_Chr06g0165291 Lupinus albus HOM05D006153 ORTHO05D007701 1.5e-12 77.0 44 70.5
MD05G1096000 Malus domestica HOM05D006153 ORTHO05D007701 1.5e-12 77.0 48 66.7
PSO541G5112 Papaver somniferum HOM05D006153 ORTHO05D007701 1.5e-12 77.0 48 64.6
Thhalv10021904m.g Eutrema salsugineum HOM05D006153 ORTHO05D007701 2.0e-12 76.6 53 66.0
Duzib132G0541 Durio zibethinus HOM05D006153 ORTHO05D007701 3.3e-12 75.9 50 66.0
Manes.10G074900 Manihot esculenta HOM05D006153 ORTHO05D007701 5.7e-12 75.1 55 60.0
Potri.001G296900 Populus trichocarpa HOM05D006153 ORTHO05D007701 5.7e-12 75.1 48 66.7
Cpa.g.sc200.7 Carica papaya HOM05D006153 ORTHO05D007701 7.5e-12 74.7 48 68.8
Eucgr.G00438 Eucalyptus grandis HOM05D006153 ORTHO05D007701 7.5e-12 74.7 48 62.5
Aa31LG8G6290 Aethionema arabicum HOM05D006153 ORTHO05D007701 9.7e-12 74.3 61 60.7
MBI16_g15146_MAGBIO Magnolia biondii HOM05D006153 ORTHO05D007701 9.7e-12 74.3 54 61.1
QL11p031990 Quercus lobata HOM05D006153 ORTHO05D007701 9.7e-12 74.3 58 55.2
TAR381G0917 Trochodendron aralioides HOM05D006153 ORTHO05D007701 9.7e-12 74.3 51 64.7
AT3G19550 Arabidopsis thaliana HOM05D006153 ORTHO05D007701 1.3e-11 73.9 56 57.1
Dinv15786 Davidia involucrata HOM05D006153 ORTHO05D007701 1.3e-11 73.9 65 53.8
Prupe.8G140400 Prunus persica HOM05D006153 ORTHO05D007701 1.3e-11 73.9 57 59.6
CARHR094970 Cardamine hirsuta HOM05D006153 ORTHO05D007701 1.7e-11 73.6 54 61.1
Lalb_Chr02g0145121 Lupinus albus HOM05D006153 ORTHO05D007701 1.7e-11 73.6 46 63.0
Solyc01g107280.3 Solanum lycopersicum HOM05D006153 ORTHO05D007701 1.7e-11 73.6 48 62.5
Sopen01g049530 Solanum pennellii HOM05D006153 ORTHO05D007701 1.7e-11 73.6 48 62.5
TWI23G0900 Tripterygium wilfordii HOM05D006153 ORTHO05D007701 1.7e-11 73.6 51 68.6
Potri.009G091100 Populus trichocarpa HOM05D006153 ORTHO05D007701 2.2e-11 73.2 60 55.0
Peaxi162Scf00003g00261 Petunia axillaris HOM05D006153 ORTHO05D007701 2.8e-11 72.8 48 62.5
FvH4_2g04480 Fragaria vesca HOM05D006153 ORTHO05D007701 3.7e-11 72.4 51 62.7
FAN24G1230 Fragaria x ananassa HOM05D006153 ORTHO05D007701 3.7e-11 72.4 51 62.7
AL3G32960 Arabidopsis lyrata HOM05D006153 ORTHO05D007701 4.8e-11 72.0 54 59.3
Lj5g0020623 Lotus japonicus HOM05D006153 ORTHO05D007701 4.8e-11 72.0 52 57.7
PGSC0003DMG400025850 Solanum tuberosum HOM05D006153 ORTHO05D007701 4.8e-11 72.0 48 62.5
Duzib052G0610 Durio zibethinus HOM05D006153 ORTHO05D007701 6.3e-11 71.6 54 61.1
Migut.I00275 Erythranthe guttata HOM05D006153 ORTHO05D007701 6.3e-11 71.6 42 71.4
FAN20G1027 Fragaria x ananassa HOM05D006153 ORTHO05D007701 6.3e-11 71.6 51 60.8
FAN27G0726 Fragaria x ananassa HOM05D006153 ORTHO05D007701 6.3e-11 71.6 51 60.8
RcHm_v2.0_Chr6g0253971 Rosa chinensis HOM05D006153 ORTHO05D007701 6.3e-11 71.6 51 64.7
Sc14g0002580 Simmondsia chinensis HOM05D006153 ORTHO05D007701 6.3e-11 71.6 52 61.5
Aqoxy6G02752 Aquilegia oxysepala HOM05D006153 ORTHO05D007701 8.2e-11 71.2 50 62.0
COL.COLO4_32545 Corchorus olitorius HOM05D006153 ORTHO05D007701 8.2e-11 71.2 50 62.0
Gohir.A01G008400 Gossypium hirsutum HOM05D006153 ORTHO05D007701 8.2e-11 71.2 46 65.2
Sabra16G0186000 Salix brachista HOM05D006153 ORTHO05D007701 8.2e-11 71.2 43 65.1
QL11p029270 Quercus lobata HOM05D006153 ORTHO05D007701 1.1e-10 70.9 43 67.4
Hma1.2p1_1174F.1_g263880 Hydrangea macrophylla HOM05D006153 ORTHO05D007701 1.4e-10 70.5 50 64.0
CiPaw.05G015200 Carya illinoinensis HOM05D006153 ORTHO05D007701 1.8e-10 70.1 45 64.4
Haze_10254 Corylus avellana HOM05D006153 ORTHO05D007701 1.8e-10 70.1 45 66.7
FAN15G1936 Fragaria x ananassa HOM05D006153 ORTHO05D007701 1.8e-10 70.1 51 62.7
Nn5g30510 Nelumbo nucifera HOM05D006153 ORTHO05D007701 2.4e-10 69.7 59 52.5
Phvul.007G043000 Phaseolus vulgaris HOM05D006153 ORTHO05D007701 2.4e-10 69.7 54 57.4
Sed0025917 Sechium edule HOM05D006153 ORTHO05D007701 2.4e-10 69.7 51 60.8
Carub.0003s1938 Capsella rubella HOM05D006153 ORTHO05D007701 3.1e-10 69.3 56 53.6
Cfa004655 Carpinus fangiana HOM05D006153 ORTHO05D007701 3.1e-10 69.3 48 62.5
DCAR_001679 Daucus carota HOM05D006153 ORTHO05D007701 3.1e-10 69.3 53 56.6
Glyma.20G131700 Glycine max HOM05D006153 ORTHO05D007701 3.1e-10 69.3 54 53.7
HanXRQChr16g0514451 Helianthus annuus HOM05D006153 ORTHO05D007701 4.1e-10 68.9 42 69.0
Oeu013772.1 Olea europaea HOM05D006153 ORTHO05D007701 5.3e-10 68.6 46 63.0
Thecc.02G113400 Theobroma cacao HOM05D006153 ORTHO05D007701 5.3e-10 68.6 48 60.4
Gorai.002G009800 Gossypium raimondii HOM05D006153 ORTHO05D007701 7.0e-10 68.2 43 60.5
Lj5g0024415 Lotus japonicus HOM05D006153 ORTHO05D007701 9.1e-10 67.8 50 56.0
ClCG02G006680 Citrullus lanatus HOM05D006153 ORTHO05D007701 1.2e-09 67.4 52 55.8
Ciclev10029838m.g Citrus clementina HOM05D006153 ORTHO05D007701 1.2e-09 67.4 49 65.3
Lsat_1_v5_gn_5_114460 Lactuca sativa HOM05D006153 ORTHO05D007701 1.2e-09 67.4 39 69.2
Lj1g0020403 Lotus japonicus HOM05D006153 ORTHO05D007701 1.2e-09 67.4 67 49.3
Haze_10299 Corylus avellana HOM05D006153 ORTHO05D007701 1.6e-09 67.0 46 56.5
Glyma.10G259200 Glycine max HOM05D006153 ORTHO05D007701 2.0e-09 66.6 54 51.9
CsaV3_7G007950 Cucumis sativus L. HOM05D006153 ORTHO05D007701 2.7e-09 66.2 51 56.9
HanXRQChr16g0514921 Helianthus annuus HOM05D006153 ORTHO05D007701 4.5e-09 65.5 39 66.7
VMungo0720G0345 Vigna mungo HOM05D006153 ORTHO05D007701 4.5e-09 65.5 42 61.9
MELO3C018509.2 Cucumis melo HOM05D006153 ORTHO05D007701 5.9e-09 65.1 44 61.4
DCAR_001674 Daucus carota HOM05D006153 ORTHO05D007701 5.9e-09 65.1 53 54.7
ECA234G4313 Erigeron canadensis HOM05D006153 ORTHO05D007701 5.9e-09 65.1 41 63.4
Cfa004694 Carpinus fangiana HOM05D006153 ORTHO05D007701 7.7e-09 64.7 50 56.0
DCAR_003609 Daucus carota HOM05D006153 ORTHO05D007701 1.0e-08 64.3 49 59.2
HanXRQChr16g0514901 Helianthus annuus HOM05D006153 ORTHO05D007701 1.0e-08 64.3 39 66.7
CANSAT25G0942 Cannabis sativa HOM05D006153 ORTHO05D007701 1.7e-08 63.5 52 57.7
Os12g0507700 Oryza sativa ssp. japonica HOM05D006153 ORTHO05D007701 2.2e-08 63.2 39 69.2
Medtr5g005180 Medicago truncatula HOM05D006153 ORTHO05D007701 2.9e-08 62.8 39 66.7
Sabra09G0070400 Salix brachista HOM05D006153 ORTHO05D007701 2.9e-08 62.8 48 54.2
Zm00001eb138020 Zea mays HOM05D006153 ORTHO05D007701 2.9e-08 62.8 39 66.7
TAR383G0592 Trochodendron aralioides HOM05D008232 ORTHO05D010390 5.0e-08 62.0 41 58.5
Cpa.g.sc2471.1 Carica papaya HOM05D008232 ORTHO05D010390 6.5e-08 61.6 40 65.0
Hund06709 Selenicereus undatus HOM05D006153 ORTHO05D007701 6.5e-08 61.6 47 53.2
HanXRQChr13g0425861 Helianthus annuus HOM05D006153 ORTHO05D007701 8.5e-08 61.2 39 64.1
Eucgr.G01281 Eucalyptus grandis HOM05D006153 ORTHO05D007701 1.1e-07 60.8 41 58.5
EL10Ac8g19360 Beta vulgaris HOM05D006153 ORTHO05D007701 1.9e-07 60.1 56 51.8
ECA234G3366 Erigeron canadensis HOM05D006153 ORTHO05D007701 1.9e-07 60.1 41 58.5
Zm00001eb264740 Zea mays HOM05D006153 ORTHO05D007701 1.9e-07 60.1 39 64.1
Ca_24350_v3 Cicer arietinum L. HOM05D006153 ORTHO05D007701 2.5e-07 59.7 37 62.2
SGA_v2.0_scaffold624G53237 Striga asiatica HOM05D006153 ORTHO05D007701 2.5e-07 59.7 48 56.2
Haze_10289 Corylus avellana HOM05D006153 ORTHO05D007701 5.5e-07 58.5 55 43.6
Aqoxy7G03060 Aquilegia oxysepala HOM05D008232 ORTHO05D010390 9.4e-07 57.8 41 56.1
Psat4g228040 Pisum sativum HOM05D006153 ORTHO05D007701 9.4e-07 57.8 37 62.2
Ciclev10026814m.g Citrus clementina HOM05D008232 ORTHO05D010390 3.6e-06 55.8 48 50.0
HanXRQChr16g0514461 Helianthus annuus HOM05D006153 ORTHO05D007701 3.6e-06 55.8 41 58.5
AUR62027357 Chenopodium quinoa HOM05D006153 ORTHO05D007701 6.1e-06 55.1 63 44.4
AUR62031329 Chenopodium quinoa HOM05D006153 ORTHO05D007701 6.1e-06 55.1 51 49.0
PSO782G2603 Papaver somniferum HOM05D008232 ORTHO05D010390 6.1e-06 55.1 53 50.9
TPR.G8325 Trifolium pratense HOM05D006153 ORTHO05D007701 6.1e-06 55.1 37 59.5


User provided reference genes

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