Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim05G0087900 Rhododendron simsii HOM05D004179 ORTHO05D005248 3.1e-235 818.1 436 100.0
Rhsim05G0087800 Rhododendron simsii HOM05D004179 ORTHO05D005248 3.7e-212 741.5 462 87.2
PGR042G2277 Punica granatum HOM05D004179 ORTHO05D005248 2.2e-209 732.3 435 88.3
GSVIVG01003166001 Vitis vinifera HOM05D004179 ORTHO05D005248 5.0e-209 731.1 438 87.0
TWI79G0140 Tripterygium wilfordii HOM05D004179 ORTHO05D005248 1.5e-208 729.6 436 87.4
Gohir.D02G207400 Gossypium hirsutum HOM05D004179 ORTHO05D005248 1.9e-208 729.2 425 88.9
Gorai.005G235300 Gossypium raimondii HOM05D004179 ORTHO05D005248 1.9e-208 729.2 425 88.9
Ciclev10028086m.g Citrus clementina HOM05D004179 ORTHO05D005248 3.2e-208 728.4 436 87.6
THA.LOC104812909 Tarenaya hassleriana HOM05D004179 ORTHO05D005248 3.2e-208 728.4 435 87.8
Gohir.A03G186600 Gossypium hirsutum HOM05D004179 ORTHO05D005248 1.2e-207 726.5 425 88.9
Hma1.2p1_0796F.1_g219140 Hydrangea macrophylla HOM05D004179 ORTHO05D005248 1.2e-207 726.5 436 86.5
Potri.009G096700 Populus trichocarpa HOM05D004179 ORTHO05D005248 1.2e-207 726.5 436 87.6
QL11p033970 Quercus lobata HOM05D004179 ORTHO05D005248 2.7e-207 725.3 436 87.6
CiPaw.05G010800 Carya illinoinensis HOM05D004179 ORTHO05D005248 6.1e-207 724.2 436 88.1
Dinv15758 Davidia involucrata HOM05D004179 ORTHO05D005248 6.1e-207 724.2 421 90.3
Manes.07G069700 Manihot esculenta HOM05D004179 ORTHO05D005248 1.0e-206 723.4 435 87.1
Nn5g30409 Nelumbo nucifera HOM05D004179 ORTHO05D005248 1.4e-206 723.0 436 86.7
vmacro19521 Vaccinium macrocarpon HOM05D004179 ORTHO05D005248 1.4e-206 723.0 477 82.8
Cfa004570 Carpinus fangiana HOM05D004179 ORTHO05D005248 1.8e-206 722.6 436 86.5
Prupe.8G134200 Prunus persica HOM05D004179 ORTHO05D005248 3.0e-206 721.8 436 86.5
Lj5A213T83 Lonicera japonica HOM05D004179 ORTHO05D005248 5.2e-206 721.1 436 86.7
Potri.001G301000 Populus trichocarpa HOM05D004179 ORTHO05D005248 5.2e-206 721.1 436 87.6
ClCG05G010240 Citrullus lanatus HOM05D004179 ORTHO05D005248 8.8e-206 720.3 436 85.8
CANSAT25G1226 Cannabis sativa HOM05D004179 ORTHO05D005248 1.2e-205 719.9 436 85.3
CANSAT25G3047 Cannabis sativa HOM05D004179 ORTHO05D005248 1.2e-205 719.9 436 85.3
Migut.B00382 Erythranthe guttata HOM05D004179 ORTHO05D005248 1.5e-205 719.5 435 86.2
Aqoxy6G02887 Aquilegia oxysepala HOM05D004179 ORTHO05D005248 2.0e-205 719.2 436 85.3
TAR628G1050 Trochodendron aralioides HOM05D004179 ORTHO05D005248 2.0e-205 719.2 436 86.5
AL3G32890 Arabidopsis lyrata HOM05D004179 ORTHO05D005248 2.6e-205 718.8 435 86.4
Carub.0003s1929 Capsella rubella HOM05D004179 ORTHO05D005248 2.6e-205 718.8 435 87.1
Haze_10162 Corylus avellana HOM05D004179 ORTHO05D005248 3.4e-205 718.4 441 86.2
Sabra09G0074300 Salix brachista HOM05D004179 ORTHO05D005248 3.4e-205 718.4 454 84.6
Thhalv10020369m.g Eutrema salsugineum HOM05D004179 ORTHO05D005248 4.4e-205 718.0 435 87.1
Oeu037243.1 Olea europaea HOM05D004179 ORTHO05D005248 4.4e-205 718.0 454 83.9
Oeu044290.1 Olea europaea HOM05D004179 ORTHO05D005248 9.8e-205 716.8 425 87.3
CARHR094910 Cardamine hirsuta HOM05D004179 ORTHO05D005248 1.3e-204 716.5 435 86.7
SGA_v2.0_scaffold225G43075 Striga asiatica HOM05D004179 ORTHO05D005248 1.7e-204 716.1 430 87.4
COL.COLO4_32603 Corchorus olitorius HOM05D004179 ORTHO05D005248 2.8e-204 715.3 436 86.2
Peaxi162Scf00152g00232 Petunia axillaris HOM05D004179 ORTHO05D005248 2.8e-204 715.3 436 86.5
PGSC0003DMG400022932 Solanum tuberosum HOM05D004179 ORTHO05D005248 2.8e-204 715.3 436 85.8
CAN.G621.5 Capsicum annuum HOM05D004179 ORTHO05D005248 3.7e-204 714.9 436 85.8
FAN20G2197 Fragaria x ananassa HOM05D004179 ORTHO05D005248 3.7e-204 714.9 436 85.1
Sp3g17540 Schrenkiella parvula HOM05D004179 ORTHO05D005248 3.7e-204 714.9 435 85.3
FAN15G2578 Fragaria x ananassa HOM05D004179 ORTHO05D005248 4.8e-204 714.5 436 85.3
AUR62010284 Chenopodium quinoa HOM05D004179 ORTHO05D005248 6.3e-204 714.1 436 85.8
FvH4_2g05320 Fragaria vesca HOM05D004179 ORTHO05D005248 1.1e-203 713.4 436 84.9
Solyc11g044540.2 Solanum lycopersicum HOM05D004179 ORTHO05D005248 1.1e-203 713.4 436 85.6
QL11p034034 Quercus lobata HOM05D004179 ORTHO05D005248 2.4e-203 712.2 425 87.5
SalBow6G5260 Salvia bowleyana HOM05D004179 ORTHO05D005248 2.4e-203 712.2 436 85.1
Sopen11g020160 Solanum pennellii HOM05D004179 ORTHO05D005248 2.4e-203 712.2 436 85.3
Eucgr.G01360 Eucalyptus grandis HOM05D004179 ORTHO05D005248 3.1e-203 711.8 436 86.0
A05p30130 Brassica napus HOM05D004179 ORTHO05D005248 4.1e-203 711.4 435 85.7
BraA05t21853Z Brassica rapa HOM05D004179 ORTHO05D005248 4.1e-203 711.4 435 85.7
Thecc.02G107000 Theobroma cacao HOM05D004179 ORTHO05D005248 4.1e-203 711.4 428 87.4
C05p45560 Brassica napus HOM05D004179 ORTHO05D005248 5.4e-203 711.1 435 85.7
BolC5t33281H Brassica oleracea HOM05D004179 ORTHO05D005248 5.4e-203 711.1 435 85.7
BcaB06g26008 Brassica carinata HOM05D004179 ORTHO05D005248 7.0e-203 710.7 435 85.5
Lj5g0015320 Lotus japonicus HOM05D004179 ORTHO05D005248 7.0e-203 710.7 436 85.1
TAR376G0033 Trochodendron aralioides HOM05D004179 ORTHO05D005248 7.0e-203 710.7 425 87.1
MSTRG.20181 Avicennia marina HOM05D004179 ORTHO05D005248 9.1e-203 710.3 438 85.4
AT3G19490 Arabidopsis thaliana HOM05D004179 ORTHO05D005248 1.6e-202 709.5 435 85.5
Ca_11083_v3 Cicer arietinum L. HOM05D004179 ORTHO05D005248 3.5e-202 708.4 437 84.7
PSO541G5343 Papaver somniferum HOM05D004179 ORTHO05D005248 3.5e-202 708.4 436 84.9
arahy.Tifrunner.gnm1.ann1.W9R5L5 Arachis hypogaea HOM05D004179 ORTHO05D005248 4.5e-202 708.0 436 85.3
BolC3t17326H Brassica oleracea HOM05D004179 ORTHO05D005248 4.5e-202 708.0 435 85.5
AUR62039105 Chenopodium quinoa HOM05D004179 ORTHO05D005248 5.9e-202 707.6 436 84.6
arahy.Tifrunner.gnm1.ann1.T2YEM3 Arachis hypogaea HOM05D004179 ORTHO05D005248 1.3e-201 706.4 435 85.3
QL11p034002 Quercus lobata HOM05D004179 ORTHO05D005248 1.3e-201 706.4 425 86.4
unitig_37.g12803 Utricularia gibba HOM05D004179 ORTHO05D005248 1.3e-201 706.4 437 84.4
DCAR_001640 Daucus carota HOM05D004179 ORTHO05D005248 1.7e-201 706.1 436 84.4
PSO675G3501 Papaver somniferum HOM05D004179 ORTHO05D005248 1.7e-201 706.1 436 83.9
A03p41230 Brassica napus HOM05D004179 ORTHO05D005248 2.3e-201 705.7 435 85.3
Hund06333 Selenicereus undatus HOM05D004179 ORTHO05D005248 2.3e-201 705.7 435 85.7
Medtr1g107485 Medicago truncatula HOM05D004179 ORTHO05D005248 2.9e-201 705.3 437 84.4
Sed0014414 Sechium edule HOM05D004179 ORTHO05D005248 3.8e-201 704.9 436 84.6
BraA03t13276Z Brassica rapa HOM05D004179 ORTHO05D005248 6.6e-201 704.1 435 85.1
Cc02_g19190 Coffea canephora HOM05D004179 ORTHO05D005248 6.6e-201 704.1 436 85.8
RcHm_v2.0_Chr6g0255511 Rosa chinensis HOM05D004179 ORTHO05D005248 6.6e-201 704.1 436 83.9
MSTRG.5346 Avicennia marina HOM05D004179 ORTHO05D005248 1.9e-200 702.6 436 84.4
Cpa.g.sc106.85 Carica papaya HOM05D004179 ORTHO05D005248 2.5e-200 702.2 410 89.8
HanXRQChr04g0128091 Helianthus annuus HOM05D004179 ORTHO05D005248 2.5e-200 702.2 438 83.6
Lsat_1_v5_gn_7_86320 Lactuca sativa HOM05D004179 ORTHO05D005248 3.3e-200 701.8 435 84.1
Phvul.007G039000 Phaseolus vulgaris HOM05D004179 ORTHO05D005248 3.3e-200 701.8 437 83.3
BcaB04g19041 Brassica carinata HOM05D004179 ORTHO05D005248 4.2e-200 701.4 435 84.8
BcaC01g03629 Brassica carinata HOM05D004179 ORTHO05D005248 5.5e-200 701.0 435 84.6
C03p50340 Brassica napus HOM05D004179 ORTHO05D005248 5.5e-200 701.0 435 84.6
EL10Ac9g22290 Beta vulgaris HOM05D004179 ORTHO05D005248 9.5e-200 700.3 449 82.4
Actinidia17883 Actinidia chinensis HOM05D004179 ORTHO05D005248 4.7e-199 698.0 417 88.2
Aa31LG8G6240 Aethionema arabicum HOM05D004179 ORTHO05D005248 2.3e-198 695.7 447 83.7
HanXRQChr16g0510101 Helianthus annuus HOM05D004179 ORTHO05D005248 2.3e-198 695.7 435 83.7
Psat6g219600 Pisum sativum HOM05D004179 ORTHO05D005248 2.3e-198 695.7 437 83.1
VMungo0720G2067 Vigna mungo HOM05D004179 ORTHO05D005248 1.5e-197 693.0 436 81.7
RcHm_v2.0_Chr6g0255491 Rosa chinensis HOM05D004179 ORTHO05D005248 2.6e-197 692.2 435 83.0
ECA236G2359 Erigeron canadensis HOM05D004179 ORTHO05D005248 3.4e-197 691.8 435 82.8
Atru.chr5.2582 Acer truncatum HOM05D004179 ORTHO05D005248 7.5e-197 690.6 436 82.6
Lalb_Chr06g0165491 Lupinus albus HOM05D004179 ORTHO05D005248 1.3e-196 689.9 436 81.4
ATR0691G115 Amborella trichopoda HOM05D004179 ORTHO05D005248 6.3e-196 687.6 436 82.1
FAN24G2682 Fragaria x ananassa HOM05D004179 ORTHO05D005248 1.8e-195 686.0 436 82.8
TPR.G13858 Trifolium pratense HOM05D004179 ORTHO05D005248 2.4e-195 685.6 437 82.6
Ah.01g018160 Amaranthus hybridus HOM05D004179 ORTHO05D005248 3.1e-195 685.3 436 81.9
Sc17g0003000 Simmondsia chinensis HOM05D004179 ORTHO05D005248 4.5e-194 681.4 410 87.8
Duzib132G1089 Durio zibethinus HOM05D004179 ORTHO05D005248 2.8e-191 672.2 424 83.3
RcHm_v2.0_Chr6g0255521 Rosa chinensis HOM05D004179 ORTHO05D005248 3.6e-191 671.8 437 80.1
Duzib052G0638 Durio zibethinus HOM05D004179 ORTHO05D005248 2.0e-189 666.0 436 82.6
HPP92_004767 Vanilla planifolia HOM05D004179 ORTHO05D005248 5.8e-189 664.5 436 79.4
Zm00001eb307330 Zea mays HOM05D004179 ORTHO05D005248 3.6e-183 645.2 410 82.2
SEGI_32792 Sequoiadendron giganteum HOM05D004179 ORTHO05D005248 1.2e-181 640.2 433 77.4
Glyma.20G129500 Glycine max HOM05D004179 ORTHO05D005248 8.3e-180 634.0 423 76.8
Nitab4.5_0001596g0010 Nicotiana tabacum HOM05D004179 ORTHO05D005248 1.4e-179 633.3 382 86.6
VMungo0720G0258 Vigna mungo HOM05D004179 ORTHO05D005248 1.4e-179 633.3 421 77.0
Hund00144 Selenicereus undatus HOM05D004179 ORTHO05D005248 7.8e-178 627.5 392 83.4
Ciclev10030164m.g Citrus clementina HOM05D004179 ORTHO05D005248 1.0e-177 627.1 381 85.6
AagrBONN_evm.TU.Sc2ySwM_117.488 Anthoceros agrestis HOM05D004179 ORTHO05D005248 1.3e-177 626.7 421 77.2
Duzib132G1182 Durio zibethinus HOM05D004179 ORTHO05D005248 4.3e-176 621.7 383 83.6
SMO347G0195 Selaginella moellendorffii HOM05D004179 ORTHO05D005248 4.0e-174 615.1 420 75.2
Pp3c4_21490 Physcomitrium patens HOM05D004179 ORTHO05D005248 3.4e-173 612.1 422 74.2
Mapoly0030s0013 Marchantia polymorpha HOM05D004179 ORTHO05D005248 4.4e-173 611.7 422 75.1
Thhalv10012248m.g Eutrema salsugineum HOM05D004179 ORTHO05D005248 7.5e-173 610.9 423 75.7
Pp3c12_4070 Physcomitrium patens HOM05D004179 ORTHO05D005248 1.1e-171 607.1 422 73.9
AT1G49810 Arabidopsis thaliana HOM05D004179 ORTHO05D005248 1.0e-169 600.5 421 73.9
AL1G57290 Arabidopsis lyrata HOM05D004179 ORTHO05D005248 3.3e-168 595.5 427 71.9
Duzib052G0741 Durio zibethinus HOM05D004179 ORTHO05D005248 3.3e-168 595.5 436 75.5
MELO3C019541.2 Cucumis melo HOM05D004179 ORTHO05D005248 1.2e-167 593.6 595 58.5
Os09g0109800 Oryza sativa ssp. japonica HOM05D004179 ORTHO05D005248 3.4e-157 558.9 358 82.7
vmacro23441 Vaccinium macrocarpon HOM05D004179 ORTHO05D005248 2.5e-152 542.7 443 70.4
CSS0041442 Camellia sinensis var. sinensis HOM05D004179 ORTHO05D005248 6.2e-143 511.5 320 84.7
BcaB06g26006 Brassica carinata HOM05D004179 ORTHO05D005248 4.5e-141 505.4 302 85.8
MD05G1088200 Malus domestica HOM05D004179 ORTHO05D005248 7.1e-139 498.0 410 68.8
CiPaw.06G169900 Carya illinoinensis HOM05D004179 ORTHO05D005248 5.3e-134 481.9 308 81.5
BcaC05g28472 Brassica carinata HOM05D004179 ORTHO05D005248 3.0e-129 466.1 435 63.0
Carub.0001s3900 Capsella rubella HOM05D004179 ORTHO05D005248 1.2e-125 454.1 354 66.9
MBI16_g34668_MAGBIO Magnolia biondii HOM05D004179 ORTHO05D005248 4.1e-118 429.1 260 83.8
CDE04G0108 Ceratophyllum demersum HOM05D004179 ORTHO05D005248 2.6e-117 426.4 437 59.5
RcHm_v2.0_Chr6g0255461 Rosa chinensis HOM05D004179 ORTHO05D005248 6.5e-116 421.8 285 77.5
Cre09.g395288 Chlamydomonas reinhardtii HOM05D004179 ORTHO05D005248 4.2e-115 419.1 467 49.9
CsaV3_3G018250 Cucumis sativus L. HOM05D004179 ORTHO05D005248 1.1e-112 411.0 255 85.1
Nitab4.5_0001539g0020 Nicotiana tabacum HOM05D004179 ORTHO05D005248 1.3e-111 407.5 247 84.6
Eucgr.H03221 Eucalyptus grandis HOM05D004179 ORTHO05D005248 7.7e-101 371.7 311 67.8
Dinv42185 Davidia involucrata HOM05D004179 ORTHO05D005248 7.7e-93 345.1 210 89.0
Actinidia27968 Actinidia chinensis HOM05D004179 ORTHO05D005248 7.0e-78 295.4 290 61.4
Glyma.10G261350 Glycine max HOM05D004179 ORTHO05D005248 4.7e-74 282.7 173 79.8
SEGI_35862 Sequoiadendron giganteum HOM05D004179 ORTHO05D005248 2.8e-66 256.9 174 74.7
CBR_g29563 Chara braunii HOM05D004179 ORTHO05D005248 2.2e-63 247.3 196 65.8
Sabra16G0189200 Salix brachista HOM05D004179 ORTHO05D005248 6.0e-53 212.6 128 84.4
HanXRQChr02g0055551 Helianthus annuus HOM05D004179 ORTHO05D005248 1.7e-52 211.1 142 76.1
CBR_g39138 Chara braunii HOM05D004179 ORTHO05D005248 3.3e-51 206.8 193 58.0
TPR.G27121 Trifolium pratense HOM05D004179 ORTHO05D005248 9.6e-43 178.7 124 72.6
RcHm_v2.0_Chr6g0255471 Rosa chinensis HOM05D004179 ORTHO05D005248 2.4e-41 174.1 117 81.2
Glyma.20G127600 Glycine max HOM05D004179 ORTHO05D005248 7.1e-38 162.5 114 78.1
SEGI_39751 Sequoiadendron giganteum HOM05D004179 ORTHO05D005248 7.3e-35 152.5 104 75.0
arahy.Tifrunner.gnm1.ann1.38ITRC Arachis hypogaea HOM05D000846 ORTHO05D021490 1.3e-31 141.7 109 76.1
SEGI_40595 Sequoiadendron giganteum HOM05D004179 ORTHO05D005248 6.0e-29 132.9 80 77.5
BcaB01g01792 Brassica carinata HOM05D002587 ORTHO05D002778 1.3e-28 131.7 101 76.2
Manes.04G059624 Manihot esculenta HOM05D004179 ORTHO05D021490 1.3e-26 125.2 69 91.3
HanXRQChr02g0055561 Helianthus annuus HOM05D004179 ORTHO05D021490 1.1e-25 122.1 78 83.3
CBR_g29562 Chara braunii HOM05D004179 ORTHO05D005248 8.4e-23 112.5 71 74.6
arahy.Tifrunner.gnm1.ann1.JR6IQW Arachis hypogaea HOM05D004179 ORTHO05D021490 5.9e-16 89.7 63 79.4
MD05G1088300 Malus domestica HOM05D004179 ORTHO05D005248 3.2e-14 84.0 56 78.6
CARHR039870 Cardamine hirsuta HOM05D004179 ORTHO05D021490 3.0e-12 77.4 58 69.0
BcaC02g11330 Brassica carinata HOM05D004179 ORTHO05D092784 2.5e-11 74.3 141 34.8
Hund13342 Selenicereus undatus HOM05D004179 ORTHO05D005248 9.7e-11 72.4 55 70.9
PSO832G1539 Papaver somniferum HOM05D000003 ORTHO05D000004 1.4e-09 68.6 38 86.8
Hund09393 Selenicereus undatus HOM05D004179 ORTHO05D005248 2.4e-09 67.8 54 68.5
SMO199G0121 Selaginella moellendorffii HOM05D004179 ORTHO05D374621 6.9e-09 66.2 93 49.5
Hund25982 Selenicereus undatus HOM05D004179 ORTHO05D021490 5.0e-07 60.1 39 82.1
TPR.G23074 Trifolium pratense HOM05D001509 ORTHO05D001361 1.4e-06 58.5 45 73.3


User provided reference genes

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