Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim05G0087800 Rhododendron simsii HOM05D004179 ORTHO05D005248 0.0e+00 1121.7 611 100.0
Hma1.2p1_0796F.1_g219140 Hydrangea macrophylla HOM05D004179 ORTHO05D005248 2.8e-258 895.2 613 79.9
Cfa004570 Carpinus fangiana HOM05D004179 ORTHO05D005248 1.1e-254 883.2 605 81.0
TWI79G0140 Tripterygium wilfordii HOM05D004179 ORTHO05D005248 6.1e-253 877.5 604 79.5
Potri.009G096700 Populus trichocarpa HOM05D004179 ORTHO05D005248 7.9e-253 877.1 609 79.1
Haze_10162 Corylus avellana HOM05D004179 ORTHO05D005248 1.0e-252 876.7 620 79.7
Ciclev10028086m.g Citrus clementina HOM05D004179 ORTHO05D005248 8.7e-252 873.6 606 79.0
Lj5A213T83 Lonicera japonica HOM05D004179 ORTHO05D005248 2.5e-251 872.1 611 77.7
Prupe.8G134200 Prunus persica HOM05D004179 ORTHO05D005248 1.3e-250 869.8 595 80.0
Gohir.D02G207400 Gossypium hirsutum HOM05D004179 ORTHO05D005248 8.2e-250 867.1 603 78.3
Manes.07G069700 Manihot esculenta HOM05D004179 ORTHO05D005248 1.4e-249 866.3 608 78.1
Gorai.005G235300 Gossypium raimondii HOM05D004179 ORTHO05D005248 2.4e-249 865.5 602 78.1
Gohir.A03G186600 Gossypium hirsutum HOM05D004179 ORTHO05D005248 9.1e-249 863.6 603 78.1
Sabra09G0074300 Salix brachista HOM05D004179 ORTHO05D005248 1.2e-248 863.2 626 76.7
QL11p033970 Quercus lobata HOM05D004179 ORTHO05D005248 1.5e-248 862.8 603 80.4
PGR042G2277 Punica granatum HOM05D004179 ORTHO05D005248 3.4e-248 861.7 575 81.0
THA.LOC104812909 Tarenaya hassleriana HOM05D004179 ORTHO05D005248 1.3e-247 859.8 574 80.1
CiPaw.05G010800 Carya illinoinensis HOM05D004179 ORTHO05D005248 3.8e-247 858.2 568 82.0
GSVIVG01003166001 Vitis vinifera HOM05D004179 ORTHO05D005248 3.8e-247 858.2 602 77.9
Potri.001G301000 Populus trichocarpa HOM05D004179 ORTHO05D005248 6.5e-247 857.4 607 78.7
CANSAT25G3047 Cannabis sativa HOM05D004179 ORTHO05D005248 1.1e-246 856.7 570 80.2
CANSAT25G1226 Cannabis sativa HOM05D004179 ORTHO05D005248 1.4e-246 856.3 570 80.2
Nn5g30409 Nelumbo nucifera HOM05D004179 ORTHO05D005248 4.2e-246 854.7 583 79.2
Sed0014414 Sechium edule HOM05D004179 ORTHO05D005248 5.5e-246 854.4 600 77.0
TAR628G1050 Trochodendron aralioides HOM05D004179 ORTHO05D005248 5.5e-246 854.4 564 81.6
FvH4_2g05320 Fragaria vesca HOM05D004179 ORTHO05D005248 7.2e-246 854.0 567 80.6
PGSC0003DMG400022932 Solanum tuberosum HOM05D004179 ORTHO05D005248 3.6e-245 851.7 613 76.0
FAN20G2197 Fragaria x ananassa HOM05D004179 ORTHO05D005248 4.7e-245 851.3 572 80.2
Lsat_1_v5_gn_7_86320 Lactuca sativa HOM05D004179 ORTHO05D005248 4.7e-245 851.3 611 76.3
TAR376G0033 Trochodendron aralioides HOM05D004179 ORTHO05D005248 6.1e-245 850.9 572 80.2
CARHR094910 Cardamine hirsuta HOM05D004179 ORTHO05D005248 7.9e-245 850.5 605 76.7
FAN15G2578 Fragaria x ananassa HOM05D004179 ORTHO05D005248 1.4e-244 849.7 572 80.2
arahy.Tifrunner.gnm1.ann1.W9R5L5 Arachis hypogaea HOM05D004179 ORTHO05D005248 2.3e-244 849.0 572 79.7
Ca_11083_v3 Cicer arietinum L. HOM05D004179 ORTHO05D005248 2.3e-244 849.0 574 79.8
arahy.Tifrunner.gnm1.ann1.T2YEM3 Arachis hypogaea HOM05D004179 ORTHO05D005248 3.0e-244 848.6 572 79.5
Eucgr.G01360 Eucalyptus grandis HOM05D004179 ORTHO05D005248 6.7e-244 847.4 611 77.1
AUR62039105 Chenopodium quinoa HOM05D004179 ORTHO05D005248 8.8e-244 847.0 617 74.1
vmacro19521 Vaccinium macrocarpon HOM05D004179 ORTHO05D005248 1.1e-243 846.7 562 83.6
AL3G32890 Arabidopsis lyrata HOM05D004179 ORTHO05D005248 2.6e-243 845.5 562 80.8
AUR62010284 Chenopodium quinoa HOM05D004179 ORTHO05D005248 3.3e-243 845.1 618 74.6
Solyc11g044540.2 Solanum lycopersicum HOM05D004179 ORTHO05D005248 4.4e-243 844.7 617 74.9
Sopen11g020160 Solanum pennellii HOM05D004179 ORTHO05D005248 5.7e-243 844.3 613 75.5
Oeu037243.1 Olea europaea HOM05D004179 ORTHO05D005248 7.4e-243 844.0 621 76.2
RcHm_v2.0_Chr6g0255511 Rosa chinensis HOM05D004179 ORTHO05D005248 9.7e-243 843.6 572 80.9
Lj5g0015320 Lotus japonicus HOM05D004179 ORTHO05D005248 1.7e-242 842.8 557 80.8
ClCG05G010240 Citrullus lanatus HOM05D004179 ORTHO05D005248 2.8e-242 842.0 600 76.0
Actinidia17883 Actinidia chinensis HOM05D004179 ORTHO05D005248 3.7e-242 841.6 574 80.5
Thecc.02G107000 Theobroma cacao HOM05D004179 ORTHO05D005248 4.8e-242 841.3 577 79.7
COL.COLO4_32603 Corchorus olitorius HOM05D004179 ORTHO05D005248 6.3e-242 840.9 589 77.9
Carub.0003s1929 Capsella rubella HOM05D004179 ORTHO05D005248 1.4e-241 839.7 603 76.0
Medtr1g107485 Medicago truncatula HOM05D004179 ORTHO05D005248 1.4e-241 839.7 617 74.6
Aa31LG8G6240 Aethionema arabicum HOM05D004179 ORTHO05D005248 3.1e-241 838.6 567 79.4
AT3G19490 Arabidopsis thaliana HOM05D004179 ORTHO05D005248 6.9e-241 837.4 566 79.9
MSTRG.20181 Avicennia marina HOM05D004179 ORTHO05D005248 6.9e-241 837.4 613 76.5
CAN.G621.5 Capsicum annuum HOM05D004179 ORTHO05D005248 1.2e-240 836.6 557 80.6
SGA_v2.0_scaffold225G43075 Striga asiatica HOM05D004179 ORTHO05D005248 1.5e-240 836.3 583 78.2
BcaB06g26008 Brassica carinata HOM05D004179 ORTHO05D005248 2.6e-240 835.5 575 78.1
Thhalv10020369m.g Eutrema salsugineum HOM05D004179 ORTHO05D005248 2.6e-240 835.5 563 80.1
Lalb_Chr06g0165491 Lupinus albus HOM05D004179 ORTHO05D005248 4.5e-240 834.7 569 77.9
Psat6g219600 Pisum sativum HOM05D004179 ORTHO05D005248 1.3e-239 833.2 560 79.3
BraA05t21853Z Brassica rapa HOM05D004179 ORTHO05D005248 1.1e-238 830.1 607 74.3
HanXRQChr16g0510101 Helianthus annuus HOM05D004179 ORTHO05D005248 1.1e-238 830.1 613 74.2
Peaxi162Scf00152g00232 Petunia axillaris HOM05D004179 ORTHO05D005248 1.1e-238 830.1 520 85.0
Cpa.g.sc106.85 Carica papaya HOM05D004179 ORTHO05D005248 1.4e-238 829.7 542 82.8
Hund06333 Selenicereus undatus HOM05D004179 ORTHO05D005248 1.4e-238 829.7 561 79.9
Aqoxy6G02887 Aquilegia oxysepala HOM05D004179 ORTHO05D005248 1.9e-238 829.3 602 75.7
Migut.B00382 Erythranthe guttata HOM05D004179 ORTHO05D005248 1.9e-238 829.3 572 78.8
EL10Ac9g22290 Beta vulgaris HOM05D004179 ORTHO05D005248 2.5e-238 828.9 646 71.2
A05p30130 Brassica napus HOM05D004179 ORTHO05D005248 3.2e-238 828.6 607 74.1
BolC5t33281H Brassica oleracea HOM05D004179 ORTHO05D005248 3.2e-238 828.6 605 74.2
TPR.G13858 Trifolium pratense HOM05D004179 ORTHO05D005248 7.2e-238 827.4 560 79.3
C05p45560 Brassica napus HOM05D004179 ORTHO05D005248 1.2e-237 826.6 605 74.2
BolC3t17326H Brassica oleracea HOM05D004179 ORTHO05D005248 2.1e-237 825.9 605 74.7
MSTRG.5346 Avicennia marina HOM05D004179 ORTHO05D005248 6.1e-237 824.3 567 78.8
Oeu044290.1 Olea europaea HOM05D004179 ORTHO05D005248 1.4e-236 823.2 563 78.9
SalBow6G5260 Salvia bowleyana HOM05D004179 ORTHO05D005248 2.3e-236 822.4 521 82.9
Sp3g17540 Schrenkiella parvula HOM05D004179 ORTHO05D005248 2.3e-236 822.4 562 78.3
C03p50340 Brassica napus HOM05D004179 ORTHO05D005248 3.9e-236 821.6 605 73.9
A03p41230 Brassica napus HOM05D004179 ORTHO05D005248 5.2e-236 821.2 559 78.7
Atru.chr5.2582 Acer truncatum HOM05D004179 ORTHO05D005248 6.7e-236 820.8 615 74.5
BcaC01g03629 Brassica carinata HOM05D004179 ORTHO05D005248 1.1e-235 820.1 605 73.7
PSO541G5343 Papaver somniferum HOM05D004179 ORTHO05D005248 1.1e-235 820.1 582 75.6
Cc02_g19190 Coffea canephora HOM05D004179 ORTHO05D005248 3.3e-235 818.5 570 78.9
BraA03t13276Z Brassica rapa HOM05D004179 ORTHO05D005248 9.7e-235 817.0 559 77.8
ECA236G2359 Erigeron canadensis HOM05D004179 ORTHO05D005248 9.7e-235 817.0 564 77.3
VMungo0720G2067 Vigna mungo HOM05D004179 ORTHO05D005248 8.2e-234 813.9 556 76.8
BcaB04g19041 Brassica carinata HOM05D004179 ORTHO05D005248 1.8e-233 812.8 611 72.5
DCAR_001640 Daucus carota HOM05D004179 ORTHO05D005248 2.4e-233 812.4 574 77.0
PSO675G3501 Papaver somniferum HOM05D004179 ORTHO05D005248 5.3e-233 811.2 558 76.7
Ah.01g018160 Amaranthus hybridus HOM05D004179 ORTHO05D005248 2.0e-232 809.3 563 76.0
unitig_37.g12803 Utricularia gibba HOM05D004179 ORTHO05D005248 1.7e-231 806.2 563 78.2
HanXRQChr04g0128091 Helianthus annuus HOM05D004179 ORTHO05D005248 2.2e-231 805.8 519 82.5
Phvul.007G039000 Phaseolus vulgaris HOM05D004179 ORTHO05D005248 2.2e-231 805.8 564 76.4
ATR0691G115 Amborella trichopoda HOM05D004179 ORTHO05D005248 5.2e-228 794.7 524 79.8
FAN24G2682 Fragaria x ananassa HOM05D004179 ORTHO05D005248 4.4e-227 791.6 598 73.7
Sc17g0003000 Simmondsia chinensis HOM05D004179 ORTHO05D005248 3.7e-226 788.5 540 78.9
HPP92_004767 Vanilla planifolia HOM05D004179 ORTHO05D005248 4.5e-224 781.6 561 74.2
RcHm_v2.0_Chr6g0255521 Rosa chinensis HOM05D004179 ORTHO05D005248 4.2e-222 775.0 532 78.8
Duzib052G0638 Durio zibethinus HOM05D004179 ORTHO05D005248 6.1e-221 771.2 519 80.7
Dinv15758 Davidia involucrata HOM05D004179 ORTHO05D005248 1.0e-215 753.8 461 87.2
RcHm_v2.0_Chr6g0255491 Rosa chinensis HOM05D004179 ORTHO05D005248 3.3e-214 748.8 492 81.3
SEGI_32792 Sequoiadendron giganteum HOM05D004179 ORTHO05D005248 1.6e-213 746.5 530 74.3
Rhsim05G0087900 Rhododendron simsii HOM05D004179 ORTHO05D005248 4.0e-212 741.9 462 87.2
MELO3C019541.2 Cucumis melo HOM05D004179 ORTHO05D005248 2.6e-211 739.2 733 58.9
Duzib052G0741 Durio zibethinus HOM05D004179 ORTHO05D005248 2.6e-211 739.2 595 70.3
QL11p034034 Quercus lobata HOM05D004179 ORTHO05D005248 6.3e-210 734.6 463 84.4
Duzib132G1089 Durio zibethinus HOM05D004179 ORTHO05D005248 1.1e-209 733.8 509 78.0
QL11p034002 Quercus lobata HOM05D004179 ORTHO05D005248 1.0e-207 727.2 463 83.2
Zm00001eb307330 Zea mays HOM05D004179 ORTHO05D005248 5.0e-207 724.9 492 77.4
Hund00144 Selenicereus undatus HOM05D004179 ORTHO05D005248 1.0e-204 717.2 566 68.9
AagrBONN_evm.TU.Sc2ySwM_117.488 Anthoceros agrestis HOM05D004179 ORTHO05D005248 1.0e-199 700.7 524 70.6
Mapoly0030s0013 Marchantia polymorpha HOM05D004179 ORTHO05D005248 1.4e-196 690.3 525 69.7
Pp3c4_21490 Physcomitrium patens HOM05D004179 ORTHO05D005248 7.3e-190 667.9 512 68.6
Pp3c12_4070 Physcomitrium patens HOM05D004179 ORTHO05D005248 2.0e-187 659.8 519 67.2
Nitab4.5_0001596g0010 Nicotiana tabacum HOM05D004179 ORTHO05D005248 3.4e-187 659.1 422 83.9
CSS0041442 Camellia sinensis var. sinensis HOM05D004179 ORTHO05D005248 7.1e-185 651.4 481 75.1
Duzib132G1182 Durio zibethinus HOM05D004179 ORTHO05D005248 7.8e-184 647.9 423 81.1
Glyma.20G129500 Glycine max HOM05D004179 ORTHO05D005248 2.8e-181 639.4 465 73.3
Os09g0109800 Oryza sativa ssp. japonica HOM05D004179 ORTHO05D005248 2.9e-178 629.4 432 78.0
Thhalv10012248m.g Eutrema salsugineum HOM05D004179 ORTHO05D005248 6.4e-178 628.2 455 73.6
Ciclev10030164m.g Citrus clementina HOM05D004179 ORTHO05D005248 7.1e-177 624.8 415 80.2
SMO347G0195 Selaginella moellendorffii HOM05D004179 ORTHO05D005248 8.7e-175 617.8 464 70.9
VMungo0720G0258 Vigna mungo HOM05D004179 ORTHO05D005248 1.2e-173 614.0 446 72.9
AT1G49810 Arabidopsis thaliana HOM05D004179 ORTHO05D005248 3.1e-172 609.4 447 72.0
AL1G57290 Arabidopsis lyrata HOM05D004179 ORTHO05D005248 4.9e-170 602.1 451 70.1
BcaC05g28472 Brassica carinata HOM05D004179 ORTHO05D005248 1.7e-162 577.0 605 57.2
MD05G1088200 Malus domestica HOM05D004179 ORTHO05D005248 1.4e-156 557.4 494 65.6
vmacro23441 Vaccinium macrocarpon HOM05D004179 ORTHO05D005248 1.4e-153 547.4 469 69.1
BcaB06g26006 Brassica carinata HOM05D004179 ORTHO05D005248 2.2e-146 523.5 342 80.1
CDE04G0108 Ceratophyllum demersum HOM05D004179 ORTHO05D005248 2.2e-146 523.5 557 56.9
CsaV3_3G018250 Cucumis sativus L. HOM05D004179 ORTHO05D005248 4.3e-142 509.2 405 70.4
Eucgr.H03221 Eucalyptus grandis HOM05D004179 ORTHO05D005248 4.8e-133 479.2 472 61.9
Dinv42185 Davidia involucrata HOM05D004179 ORTHO05D005248 5.3e-132 475.7 339 77.9
CiPaw.06G169900 Carya illinoinensis HOM05D004179 ORTHO05D005248 5.0e-130 469.2 325 77.5
Carub.0001s3900 Capsella rubella HOM05D004179 ORTHO05D005248 2.7e-128 463.4 380 64.7
MBI16_g34668_MAGBIO Magnolia biondii HOM05D004179 ORTHO05D005248 3.7e-125 453.0 276 85.1
Nitab4.5_0001539g0020 Nicotiana tabacum HOM05D004179 ORTHO05D005248 3.8e-122 443.0 261 88.1
RcHm_v2.0_Chr6g0255461 Rosa chinensis HOM05D004179 ORTHO05D005248 6.1e-120 435.6 285 81.1
Cre09.g395288 Chlamydomonas reinhardtii HOM05D004179 ORTHO05D005248 5.3e-116 422.5 522 47.3
Actinidia27968 Actinidia chinensis HOM05D004179 ORTHO05D005248 1.9e-89 334.3 510 45.9
Sabra16G0189200 Salix brachista HOM05D004179 ORTHO05D005248 3.0e-82 310.5 595 40.8
Glyma.10G261350 Glycine max HOM05D004179 ORTHO05D005248 1.2e-75 288.5 186 78.5
SEGI_35862 Sequoiadendron giganteum HOM05D004179 ORTHO05D005248 8.6e-74 282.3 239 63.2
Glyma.20G127600 Glycine max HOM05D004179 ORTHO05D005248 1.6e-67 261.5 197 71.6
CBR_g29563 Chara braunii HOM05D004179 ORTHO05D005248 7.6e-62 242.7 320 48.1
HanXRQChr02g0055551 Helianthus annuus HOM05D004179 ORTHO05D005248 5.3e-55 219.9 142 79.6
SEGI_39751 Sequoiadendron giganteum HOM05D004179 ORTHO05D005248 1.7e-53 214.9 171 65.5
RcHm_v2.0_Chr6g0255471 Rosa chinensis HOM05D004179 ORTHO05D005248 1.1e-47 195.7 117 88.0
CBR_g39138 Chara braunii HOM05D004179 ORTHO05D005248 1.8e-47 194.9 219 51.1
TPR.G27121 Trifolium pratense HOM05D004179 ORTHO05D005248 2.4e-47 194.5 126 78.6
Hund13342 Selenicereus undatus HOM05D004179 ORTHO05D005248 8.4e-37 159.5 184 53.3
Hund09393 Selenicereus undatus HOM05D004179 ORTHO05D005248 2.5e-36 157.9 155 58.7
arahy.Tifrunner.gnm1.ann1.38ITRC Arachis hypogaea HOM05D000846 ORTHO05D021490 1.3e-32 145.6 127 70.9
SEGI_40595 Sequoiadendron giganteum HOM05D004179 ORTHO05D005248 4.8e-32 143.7 94 71.3
PSO832G1539 Papaver somniferum HOM05D000003 ORTHO05D000004 1.9e-28 131.7 104 68.3
Manes.04G059624 Manihot esculenta HOM05D004179 ORTHO05D021490 6.1e-27 126.7 69 92.8
HanXRQChr02g0055561 Helianthus annuus HOM05D004179 ORTHO05D021490 1.0e-26 125.9 78 85.9
BcaB01g01792 Brassica carinata HOM05D002587 ORTHO05D002778 1.5e-25 122.1 157 51.6
CBR_g29562 Chara braunii HOM05D004179 ORTHO05D005248 1.1e-23 115.9 90 62.2
TPR.G23074 Trifolium pratense HOM05D001509 ORTHO05D001361 6.9e-23 113.2 79 75.9
MD05G1088300 Malus domestica HOM05D004179 ORTHO05D005248 7.7e-22 109.8 70 82.9
arahy.Tifrunner.gnm1.ann1.38IWEY Arachis hypogaea HOM05D004179 ORTHO05D005248 8.8e-18 96.3 61 80.3
arahy.Tifrunner.gnm1.ann1.JR6IQW Arachis hypogaea HOM05D004179 ORTHO05D021490 2.2e-16 91.7 53 90.6
BcaC02g11330 Brassica carinata HOM05D004179 ORTHO05D092784 2.9e-13 81.3 150 36.7
CARHR039870 Cardamine hirsuta HOM05D004179 ORTHO05D021490 4.2e-12 77.4 58 70.7
HanXRQChr04g0106691 Helianthus annuus HOM05D004179 ORTHO05D020814 1.0e-10 72.8 49 75.5
VMungo0720G0416 Vigna mungo HOM05D004179 ORTHO05D020814 5.1e-10 70.5 56 62.5
VMungo1215G0907 Vigna mungo HOM05D004179 ORTHO05D020814 2.6e-09 68.2 57 61.4
Hund25982 Selenicereus undatus HOM05D004179 ORTHO05D021490 1.7e-08 65.5 39 87.2


User provided reference genes

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