Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim05G0079000 Rhododendron simsii HOM05D004388 ORTHO05D005106 1.0e-58 229.9 124 100.0
ClCG02G005540 Citrullus lanatus HOM05D004388 ORTHO05D005106 1.4e-23 113.2 129 58.9
Ciclev10030439m.g Citrus clementina HOM05D004388 ORTHO05D005106 2.4e-23 112.5 126 58.7
MELO3C018419.2 Cucumis melo HOM05D004388 ORTHO05D005106 9.1e-23 110.5 129 57.4
TAR376G0986 Trochodendron aralioides HOM05D004388 ORTHO05D005106 9.1e-23 110.5 127 55.1
Hma1.2p1_1527F.1_g289065 Hydrangea macrophylla HOM05D004388 ORTHO05D005106 1.6e-22 109.8 127 59.1
CsaV3_7G010090 Cucumis sativus L. HOM05D004388 ORTHO05D005106 1.0e-21 107.1 129 55.8
CSS0032006 Camellia sinensis var. sinensis HOM05D004388 ORTHO05D005106 2.2e-21 105.9 104 60.6
CANSAT25G3863 Cannabis sativa HOM05D004388 ORTHO05D005106 2.2e-21 105.9 126 56.3
RcHm_v2.0_Chr3g0487591 Rosa chinensis HOM05D004388 ORTHO05D005106 3.8e-21 105.1 127 55.1
HanXRQChr16g0506081 Helianthus annuus HOM05D004388 ORTHO05D005106 5.0e-21 104.8 127 58.3
Gorai.002G214600 Gossypium raimondii HOM05D004388 ORTHO05D005106 6.5e-21 104.4 122 54.1
Duzib132G0841 Durio zibethinus HOM05D004388 ORTHO05D005106 8.5e-21 104.0 128 53.9
FAN06G4461 Fragaria x ananassa HOM05D004388 ORTHO05D005106 8.5e-21 104.0 124 56.5
HanXRQChr04g0128391 Helianthus annuus HOM05D004388 ORTHO05D005106 8.5e-21 104.0 122 53.3
Medtr1g034260 Medicago truncatula HOM05D004388 ORTHO05D005106 8.5e-21 104.0 130 55.4
Nn5g29406 Nelumbo nucifera HOM05D004388 ORTHO05D005106 1.1e-20 103.6 130 54.6
Gohir.D01G173000 Gossypium hirsutum HOM05D004388 ORTHO05D005106 1.5e-20 103.2 126 55.6
Hma1.2p1_0584F.1_g183220 Hydrangea macrophylla HOM05D004388 ORTHO05D005106 1.5e-20 103.2 130 56.2
FAN10G0172 Fragaria x ananassa HOM05D004388 ORTHO05D005106 1.9e-20 102.8 124 55.6
Thecc.02G028000 Theobroma cacao HOM05D004388 ORTHO05D005106 1.9e-20 102.8 124 54.0
FvH4_7g04430 Fragaria vesca HOM05D004388 ORTHO05D005106 3.2e-20 102.1 124 55.6
FAN03G2535 Fragaria x ananassa HOM05D004388 ORTHO05D005106 3.2e-20 102.1 123 56.1
FAN06G3575 Fragaria x ananassa HOM05D004388 ORTHO05D005106 3.2e-20 102.1 124 55.6
Potri.004G147300 Populus trichocarpa HOM05D004388 ORTHO05D005106 3.2e-20 102.1 125 56.0
Sabra09G0082900 Salix brachista HOM05D004388 ORTHO05D005106 3.2e-20 102.1 128 57.8
COL.COLO4_17768 Corchorus olitorius HOM05D004388 ORTHO05D005106 4.2e-20 101.7 123 56.1
Lsat_1_v5_gn_7_88020 Lactuca sativa HOM05D004388 ORTHO05D005106 4.2e-20 101.7 127 58.3
Potri.009G108700 Populus trichocarpa HOM05D004388 ORTHO05D005106 5.5e-20 101.3 128 58.6
CSS0016442 Camellia sinensis var. sinensis HOM05D004388 ORTHO05D005106 7.2e-20 100.9 128 56.2
CSS0020304 Camellia sinensis var. sinensis HOM05D004388 ORTHO05D005106 7.2e-20 100.9 128 56.2
Cc02_g18220 Coffea canephora HOM05D004388 ORTHO05D005106 7.2e-20 100.9 129 53.5
Glyma.20G008600 Glycine max HOM05D004388 ORTHO05D005106 7.2e-20 100.9 131 56.5
Gohir.A01G181900 Gossypium hirsutum HOM05D004388 ORTHO05D005106 7.2e-20 100.9 126 54.0
Gohir.D02G236000 Gossypium hirsutum HOM05D004388 ORTHO05D005106 7.2e-20 100.9 128 53.9
Nn6g32144 Nelumbo nucifera HOM05D004388 ORTHO05D005106 7.2e-20 100.9 132 54.5
Sed0011034 Sechium edule HOM05D004388 ORTHO05D005106 7.2e-20 100.9 130 54.6
DCAR_001610 Daucus carota HOM05D004388 ORTHO05D005106 1.2e-19 100.1 126 52.4
FvH4_1g27200 Fragaria vesca HOM05D004388 ORTHO05D005106 1.2e-19 100.1 127 56.7
FAN26G1198 Fragaria x ananassa HOM05D004388 ORTHO05D005106 1.2e-19 100.1 127 56.7
FAN28G0470 Fragaria x ananassa HOM05D004388 ORTHO05D005106 1.2e-19 100.1 127 56.7
Prupe.8G112900 Prunus persica HOM05D004388 ORTHO05D005106 1.2e-19 100.1 123 54.5
CiPaw.05G058500 Carya illinoinensis HOM05D004388 ORTHO05D005106 1.6e-19 99.8 124 54.8
Duzib052G1120 Durio zibethinus HOM05D004388 ORTHO05D005106 1.6e-19 99.8 124 50.0
QL03p018404 Quercus lobata HOM05D004388 ORTHO05D005106 1.6e-19 99.8 121 54.5
Gorai.005G264100 Gossypium raimondii HOM05D004388 ORTHO05D005106 2.7e-19 99.0 128 53.1
Lalb_Chr10g0095391 Lupinus albus HOM05D004388 ORTHO05D005106 2.7e-19 99.0 121 54.5
PGSC0003DMG400006208 Solanum tuberosum HOM05D004388 ORTHO05D005106 2.7e-19 99.0 129 54.3
Duzib248G1645 Durio zibethinus HOM05D004388 ORTHO05D005106 4.7e-19 98.2 124 49.2
Eucgr.G01518 Eucalyptus grandis HOM05D004388 ORTHO05D005106 4.7e-19 98.2 126 53.2
FAN19G2330 Fragaria x ananassa HOM05D004388 ORTHO05D005106 4.7e-19 98.2 127 55.9
FAN23G2994 Fragaria x ananassa HOM05D004388 ORTHO05D005106 4.7e-19 98.2 127 55.9
QL11p039202 Quercus lobata HOM05D004388 ORTHO05D005106 4.7e-19 98.2 121 52.9
FAN27G3490 Fragaria x ananassa HOM05D004388 ORTHO05D005106 6.1e-19 97.8 123 54.5
FAN28G0922 Fragaria x ananassa HOM05D004388 ORTHO05D005106 6.1e-19 97.8 127 55.9
Ca_12477_v3 Cicer arietinum L. HOM05D004388 ORTHO05D005106 8.0e-19 97.4 116 56.0
Duzib248G0675 Durio zibethinus HOM05D004388 ORTHO05D005106 8.0e-19 97.4 121 53.7
ECA236G2461 Erigeron canadensis HOM05D004388 ORTHO05D005106 8.0e-19 97.4 127 55.9
MD05G1072400 Malus domestica HOM05D004388 ORTHO05D005106 1.0e-18 97.1 128 53.1
Oeu034076.1 Olea europaea HOM05D004388 ORTHO05D005106 1.0e-18 97.1 130 55.4
Gohir.A03G214500 Gossypium hirsutum HOM05D004388 ORTHO05D005106 1.4e-18 96.7 128 52.3
Sopen10g022090 Solanum pennellii HOM05D004388 ORTHO05D005106 1.4e-18 96.7 129 51.9
VMungo1215G1405 Vigna mungo HOM05D004388 ORTHO05D005106 1.4e-18 96.7 124 53.2
Dinv36015 Davidia involucrata HOM05D004388 ORTHO05D005106 1.8e-18 96.3 130 53.8
Cfa004944 Carpinus fangiana HOM05D004388 ORTHO05D005106 2.3e-18 95.9 122 52.5
COL.COLO4_26416 Corchorus olitorius HOM05D004388 ORTHO05D005106 2.3e-18 95.9 129 51.9
FvH4_2g07330 Fragaria vesca HOM05D004388 ORTHO05D005106 2.3e-18 95.9 123 53.7
FAN24G3543 Fragaria x ananassa HOM05D004388 ORTHO05D005106 2.3e-18 95.9 123 53.7
Glyma.07G163600 Glycine max HOM05D004388 ORTHO05D005106 2.3e-18 95.9 127 54.3
EL10Ac1g01755 Beta vulgaris HOM05D004388 ORTHO05D005106 3.0e-18 95.5 130 53.8
Duzib248G0127 Durio zibethinus HOM05D004388 ORTHO05D005106 4.0e-18 95.1 124 49.2
FAN15G0910 Fragaria x ananassa HOM05D004388 ORTHO05D005106 6.8e-18 94.4 123 53.7
SalBow6G5992 Salvia bowleyana HOM05D004388 ORTHO05D005106 6.8e-18 94.4 90 62.2
TAR625G0696 Trochodendron aralioides HOM05D004388 ORTHO05D005106 6.8e-18 94.4 128 50.8
Phvul.003G011200 Phaseolus vulgaris HOM05D004388 ORTHO05D005106 1.2e-17 93.6 126 54.0
MSTRG.20123 Avicennia marina HOM05D004388 ORTHO05D005106 1.5e-17 93.2 111 54.1
Manes.15G145400 Manihot esculenta HOM05D004388 ORTHO05D005106 1.5e-17 93.2 126 53.2
AUR62040093 Chenopodium quinoa HOM05D004388 ORTHO05D005106 2.6e-17 92.4 129 53.5
AUR62033874 Chenopodium quinoa HOM05D004388 ORTHO05D005106 5.7e-17 91.3 132 53.8
PSO541G0781 Papaver somniferum HOM05D004388 ORTHO05D005106 7.5e-17 90.9 128 51.6
Solyc01g109040.4 Solanum lycopersicum HOM05D004388 ORTHO05D005106 9.8e-17 90.5 125 50.4
Atru.BG.71.p Acer truncatum HOM05D004388 ORTHO05D005106 1.3e-16 90.1 91 61.5
Peaxi162Scf00016g01338 Petunia axillaris HOM05D004388 ORTHO05D005106 1.3e-16 90.1 120 50.0
Manes.05G168800 Manihot esculenta HOM05D004388 ORTHO05D005106 1.7e-16 89.7 130 49.2
Ah.09g229630 Amaranthus hybridus HOM05D004388 ORTHO05D005106 2.2e-16 89.4 131 49.6
Cfa018482 Carpinus fangiana HOM05D004388 ORTHO05D005106 2.2e-16 89.4 129 50.4
TWI56G1138 Tripterygium wilfordii HOM05D004388 ORTHO05D005106 2.2e-16 89.4 130 49.2
CAN.G322.84 Capsicum annuum HOM05D004388 ORTHO05D005106 2.8e-16 89.0 125 48.8
Cpa.g.sc64.17 Carica papaya HOM05D004388 ORTHO05D005106 3.7e-16 88.6 130 52.3
CiPaw.16G051700 Carya illinoinensis HOM05D004388 ORTHO05D005106 4.8e-16 88.2 125 54.4
Lalb_Chr01g0003011 Lupinus albus HOM05D004388 ORTHO05D005106 4.8e-16 88.2 88 60.2
Migut.B00292 Erythranthe guttata HOM05D004388 ORTHO05D005106 6.3e-16 87.8 122 50.0
PGSC0003DMG402025831 Solanum tuberosum HOM05D004388 ORTHO05D005106 6.3e-16 87.8 125 48.8
PSO170G0356 Papaver somniferum HOM05D004388 ORTHO05D005106 8.3e-16 87.4 128 49.2
PGR042G3241 Punica granatum HOM05D004388 ORTHO05D005106 8.3e-16 87.4 114 52.6
Actinidia00479 Actinidia chinensis HOM05D000395 ORTHO05D005106 1.1e-15 87.0 127 52.0
GSVIVG01009587001 Vitis vinifera HOM05D004388 ORTHO05D005106 1.1e-15 87.0 129 51.9
Sc15g0006590 Simmondsia chinensis HOM05D004388 ORTHO05D005106 1.4e-15 86.7 130 51.5
DCAR_000094 Daucus carota HOM05D004388 ORTHO05D005106 1.8e-15 86.3 125 48.8
DCAR_029046 Daucus carota HOM05D004388 ORTHO05D005106 1.8e-15 86.3 125 48.8
Peaxi162Scf00684g00563 Petunia axillaris HOM05D004388 ORTHO05D005106 2.4e-15 85.9 126 50.0
Potri.014G037000 Populus trichocarpa HOM05D004388 ORTHO05D005106 2.4e-15 85.9 129 48.1
Sopen01g051240 Solanum pennellii HOM05D004388 ORTHO05D005106 3.1e-15 85.5 125 48.8
arahy.Tifrunner.gnm1.ann1.ISKM3Z Arachis hypogaea HOM05D004388 ORTHO05D005106 4.1e-15 85.1 125 48.0
Glyma.04G035900 Glycine max HOM05D004388 ORTHO05D005106 4.1e-15 85.1 127 51.2
MBI16_g31481_MAGBIO Magnolia biondii HOM05D004388 ORTHO05D005106 4.1e-15 85.1 132 46.2
Aqoxy6G00936 Aquilegia oxysepala HOM05D004388 ORTHO05D005106 5.4e-15 84.7 127 52.0
Psat6g097040 Pisum sativum HOM05D004388 ORTHO05D005106 9.1e-15 84.0 134 50.7
arahy.Tifrunner.gnm1.ann1.2I4SWN Arachis hypogaea HOM05D004388 ORTHO05D005106 1.2e-14 83.6 129 47.3
ATR0733G197 Amborella trichopoda HOM05D004388 ORTHO05D005106 1.6e-14 83.2 126 49.2
VMungo1309G1869 Vigna mungo HOM05D004388 ORTHO05D005106 1.6e-14 83.2 127 48.8
Lalb_Chr11g0062471 Lupinus albus HOM05D004388 ORTHO05D005106 2.0e-14 82.8 127 48.0
Zm00001eb058590 Zea mays HOM05D004388 ORTHO05D005106 2.0e-14 82.8 90 57.8
Aa31LG5G9370 Aethionema arabicum HOM05D004388 ORTHO05D005106 2.7e-14 82.4 95 56.8
Nitab4.5_0001401g0180 Nicotiana tabacum HOM05D004388 ORTHO05D005106 2.7e-14 82.4 124 46.8
Phvul.009G061900 Phaseolus vulgaris HOM05D004388 ORTHO05D005106 2.7e-14 82.4 127 49.6
HPP92_017776 Vanilla planifolia HOM05D004388 ORTHO05D005106 2.7e-14 82.4 121 48.8
THA.LOC104803691 Tarenaya hassleriana HOM05D004388 ORTHO05D005106 3.5e-14 82.0 131 46.6
TPR.G40836 Trifolium pratense HOM05D004388 ORTHO05D005106 3.5e-14 82.0 77 62.3
Gorai.010G015700 Gossypium raimondii HOM05D004388 ORTHO05D005106 4.5e-14 81.6 131 46.6
Glyma.06G035900 Glycine max HOM05D004388 ORTHO05D005106 5.9e-14 81.3 124 48.4
MD10G1086700 Malus domestica HOM05D004388 ORTHO05D005106 5.9e-14 81.3 116 50.0
Nitab4.5_0008194g0060 Nicotiana tabacum HOM05D004388 ORTHO05D005106 5.9e-14 81.3 124 46.0
Sabra14G0026600 Salix brachista HOM05D004388 ORTHO05D005106 5.9e-14 81.3 130 48.5
TWI12G0249 Tripterygium wilfordii HOM05D004388 ORTHO05D005106 5.9e-14 81.3 133 47.4
Os03g0765900 Oryza sativa ssp. japonica HOM05D004388 ORTHO05D005106 1.3e-13 80.1 113 49.6
Sp4g07480 Schrenkiella parvula HOM05D004388 ORTHO05D005106 1.3e-13 80.1 132 49.2
Zm00001eb214080 Zea mays HOM05D004388 ORTHO05D005106 1.3e-13 80.1 119 48.7
arahy.Tifrunner.gnm1.ann1.RG9LRA Arachis hypogaea HOM05D004388 ORTHO05D005106 5.0e-13 78.2 121 47.1
BcaB01g03018 Brassica carinata HOM05D004388 ORTHO05D005106 5.0e-13 78.2 126 45.2
Lalb_Chr08g0245721 Lupinus albus HOM05D004388 ORTHO05D005106 5.0e-13 78.2 128 46.1
unitig_0.g849 Utricularia gibba HOM05D004388 ORTHO05D005106 5.0e-13 78.2 121 48.8
Thecc.08G017000 Theobroma cacao HOM05D004388 ORTHO05D005106 6.5e-13 77.8 132 43.9
AT2G26500 Arabidopsis thaliana HOM05D004388 ORTHO05D005106 8.5e-13 77.4 131 47.3
Thhalv10001257m.g Eutrema salsugineum HOM05D004388 ORTHO05D005106 8.5e-13 77.4 116 48.3
AL4G19340 Arabidopsis lyrata HOM05D004388 ORTHO05D005106 1.1e-12 77.0 131 47.3
Carub.0004s0666 Capsella rubella HOM05D004388 ORTHO05D005106 1.1e-12 77.0 131 47.3
FAN20G1062 Fragaria x ananassa HOM05D004388 ORTHO05D005106 1.9e-12 76.3 88 58.0
TWI36G1636 Tripterygium wilfordii HOM05D004388 ORTHO05D005106 1.9e-12 76.3 133 45.1
unitig_21.g20762 Utricularia gibba HOM05D004388 ORTHO05D005106 3.2e-12 75.5 126 48.4
unitig_744.g24243 Utricularia gibba HOM05D004388 ORTHO05D005106 9.4e-12 73.9 123 48.0
A09p55160 Brassica napus HOM05D004388 ORTHO05D005106 1.6e-11 73.2 132 47.7
BraA09t40924Z Brassica rapa HOM05D004388 ORTHO05D005106 1.6e-11 73.2 132 47.7
BcaC07g40816 Brassica carinata HOM05D004388 ORTHO05D005106 2.1e-11 72.8 132 47.7
C08p38090 Brassica napus HOM05D004388 ORTHO05D005106 2.1e-11 72.8 132 47.7
BolC8t51384H Brassica oleracea HOM05D004388 ORTHO05D005106 2.1e-11 72.8 132 47.7
Lj1g0026402 Lotus japonicus HOM05D004388 ORTHO05D005106 2.1e-11 72.8 131 48.9
CARHR118500 Cardamine hirsuta HOM05D004388 ORTHO05D005106 2.7e-11 72.4 131 45.0
AagrBONN_evm.TU.Sc2ySwM_228.5818 Anthoceros agrestis HOM05D004388 ORTHO05D005106 3.0e-10 68.9 132 38.6
SGA_v2.0_scaffold58G20597 Striga asiatica HOM05D004388 ORTHO05D005106 3.0e-10 68.9 130 43.1
Pp3c5_10730 Physcomitrium patens HOM05D004388 ORTHO05D005106 4.0e-10 68.6 127 40.9
Pp3c6_20300 Physcomitrium patens HOM05D004388 ORTHO05D005106 4.0e-10 68.6 125 38.4
CDE01G0191 Ceratophyllum demersum HOM05D004388 ORTHO05D005106 1.2e-09 67.0 53 71.7
Eucgr.I01216 Eucalyptus grandis HOM05D004388 ORTHO05D005106 1.5e-09 66.6 110 49.1
BcaB08g35304 Brassica carinata HOM05D004388 ORTHO05D005106 5.7e-09 64.7 53 67.9
SMO361G0239 Selaginella moellendorffii HOM05D004388 ORTHO05D005106 2.2e-08 62.8 123 40.7
Mapoly0043s0110 Marchantia polymorpha HOM05D004388 ORTHO05D005106 1.8e-07 59.7 125 37.6
CBR_g48936 Chara braunii HOM05D004388 ORTHO05D005106 3.1e-07 58.9 126 38.9
GSVIVG01031853001 Vitis vinifera HOM05D008110 ORTHO05D005106 4.5e-06 55.1 75 52.0
Oeu010570.1 Olea europaea HOM05D000395 ORTHO05D000088 5.9e-06 54.7 71 47.9


User provided reference genes

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