Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim05G0078700 Rhododendron simsii HOM05D000243 ORTHO05D338766 8.9e-81 303.5 150 100.0
Rhsim05G0078600 Rhododendron simsii HOM05D000243 ORTHO05D001390 1.9e-30 136.3 82 75.6
Rhsim05G0078800 Rhododendron simsii HOM05D000243 ORTHO05D001390 5.6e-27 124.8 104 61.5
Actinidia26161 Actinidia chinensis HOM05D000243 ORTHO05D010086 1.9e-11 73.2 109 37.6
Actinidia06467 Actinidia chinensis HOM05D000243 ORTHO05D026284 1.4e-09 67.0 109 39.4
vmacro01731 Vaccinium macrocarpon HOM05D000243 ORTHO05D426700 2.6e-08 62.8 104 39.4
Dinv19394 Davidia involucrata HOM05D000243 ORTHO05D000007 5.9e-08 61.6 39 61.5
Rhsim11G0126000 Rhododendron simsii HOM05D000243 ORTHO05D026284 5.9e-08 61.6 114 36.0
EL10Ac2g02991 Beta vulgaris HOM05D000243 ORTHO05D001390 1.3e-07 60.5 42 59.5
ECA246G0890 Erigeron canadensis HOM05D000243 ORTHO05D000278 1.7e-07 60.1 63 44.4
HanXRQChr11g0325441 Helianthus annuus HOM05D000243 ORTHO05D000278 1.7e-07 60.1 49 55.1
Prupe.5G193300 Prunus persica HOM05D000243 ORTHO05D001390 2.2e-07 59.7 73 42.5
Sopen02g029860 Solanum pennellii HOM05D000243 ORTHO05D000278 2.2e-07 59.7 71 40.8
Manes.18G061600 Manihot esculenta HOM05D000243 ORTHO05D000278 2.9e-07 59.3 84 40.5
Rhsim08G0118200 Rhododendron simsii HOM05D000243 ORTHO05D000278 2.9e-07 59.3 38 65.8
PGSC0003DMG400003510 Solanum tuberosum HOM05D000243 ORTHO05D000278 2.9e-07 59.3 63 42.9
Actinidia19191 Actinidia chinensis HOM05D000243 ORTHO05D000278 3.8e-07 58.9 54 51.9
Lsat_1_v5_gn_3_76721 Lactuca sativa HOM05D000243 ORTHO05D000278 3.8e-07 58.9 58 46.6
vmacro19478 Vaccinium macrocarpon HOM05D000243 ORTHO05D026284 3.8e-07 58.9 96 36.5
Sopen03g014850 Solanum pennellii HOM05D000243 ORTHO05D001390 5.0e-07 58.5 46 58.7
Ciclev10003937m.g Citrus clementina HOM05D000243 ORTHO05D000278 6.5e-07 58.2 44 61.4
Sc01g0001000 Simmondsia chinensis HOM05D000243 ORTHO05D000278 6.5e-07 58.2 106 37.7
FvH4_5g14960 Fragaria vesca HOM05D000243 ORTHO05D001390 8.5e-07 57.8 53 52.8
FAN08G2147 Fragaria x ananassa HOM05D000243 ORTHO05D001390 8.5e-07 57.8 53 52.8
FAN18G3644 Fragaria x ananassa HOM05D000243 ORTHO05D001390 8.5e-07 57.8 53 52.8
Gohir.A11G183700 Gossypium hirsutum HOM05D000243 ORTHO05D000278 8.5e-07 57.8 54 50.0
Oeu009317.1 Olea europaea HOM05D000243 ORTHO05D001390 8.5e-07 57.8 38 60.5
Peaxi162Scf00280g01015 Petunia axillaris HOM05D000243 ORTHO05D000278 8.5e-07 57.8 86 38.4
RhsimUnG0100000 Rhododendron simsii HOM05D000243 ORTHO05D000278 8.5e-07 57.8 38 63.2
unitig_750.g28503 Utricularia gibba HOM05D000243 ORTHO05D001390 8.5e-07 57.8 46 58.7
Actinidia35632 Actinidia chinensis HOM05D000243 ORTHO05D000278 1.1e-06 57.4 38 63.2
Duzib147G0763 Durio zibethinus HOM05D000243 ORTHO05D000278 1.1e-06 57.4 54 51.9
Duzib264G0295 Durio zibethinus HOM05D000243 ORTHO05D000278 1.1e-06 57.4 54 51.9
Gorai.007G050500 Gossypium raimondii HOM05D000243 ORTHO05D000278 1.1e-06 57.4 80 42.5
Lsat_1_v5_gn_4_152340 Lactuca sativa HOM05D000243 ORTHO05D000278 1.1e-06 57.4 38 60.5
Lj4g0021504 Lotus japonicus HOM05D000243 ORTHO05D000278 1.1e-06 57.4 55 50.9
MD14G1200200 Malus domestica HOM05D000243 ORTHO05D001390 1.1e-06 57.4 73 42.5
Thecc.01G034100 Theobroma cacao HOM05D000243 ORTHO05D000278 1.1e-06 57.4 54 51.9
GSVIVG01019981001 Vitis vinifera HOM05D000243 ORTHO05D001390 1.1e-06 57.4 66 45.5
arahy.Tifrunner.gnm1.ann1.T0ZIH1 Arachis hypogaea HOM05D000243 ORTHO05D000278 1.4e-06 57.0 38 60.5
arahy.Tifrunner.gnm1.ann1.VL9YFV Arachis hypogaea HOM05D000243 ORTHO05D000278 1.4e-06 57.0 38 60.5
C09p10510 Brassica napus HOM05D000243 ORTHO05D000278 1.4e-06 57.0 72 41.7
CiPaw.01G040300 Carya illinoinensis HOM05D000243 ORTHO05D000278 1.4e-06 57.0 38 60.5
ClCG01G019630 Citrullus lanatus HOM05D000243 ORTHO05D000278 1.4e-06 57.0 68 45.6
Ciclev10025926m.g Citrus clementina HOM05D000243 ORTHO05D000278 1.4e-06 57.0 38 57.9
CsaV3_1G002310 Cucumis sativus L. HOM05D000243 ORTHO05D001390 1.4e-06 57.0 65 44.6
Gohir.A11G043500 Gossypium hirsutum HOM05D000243 ORTHO05D000278 1.4e-06 57.0 64 48.4
Gohir.D11G047000 Gossypium hirsutum HOM05D000243 ORTHO05D000278 1.4e-06 57.0 64 48.4
Gohir.D11G190200 Gossypium hirsutum HOM05D000243 ORTHO05D000278 1.4e-06 57.0 54 50.0
Gorai.007G202500 Gossypium raimondii HOM05D000243 ORTHO05D000278 1.4e-06 57.0 54 50.0
MD06G1193200 Malus domestica HOM05D000243 ORTHO05D001390 1.4e-06 57.0 56 44.6
Oeu033651.1 Olea europaea HOM05D000243 ORTHO05D000278 1.4e-06 57.0 38 60.5
THA.LOC104819782 Tarenaya hassleriana HOM05D000243 ORTHO05D000278 1.4e-06 57.0 38 63.2
THA.LOC104821287 Tarenaya hassleriana HOM05D000243 ORTHO05D000278 1.4e-06 57.0 63 44.4
unitig_62.g23461 Utricularia gibba HOM05D000243 ORTHO05D001390 1.4e-06 57.0 53 52.8
Dinv38710 Davidia involucrata HOM05D000243 ORTHO05D001390 1.9e-06 56.6 38 57.9
FAN04G0716 Fragaria x ananassa HOM05D000243 ORTHO05D001390 1.9e-06 56.6 53 50.9
Glyma.09G238500 Glycine max HOM05D000243 ORTHO05D001390 1.9e-06 56.6 41 58.5
Gohir.D09G015100 Gossypium hirsutum HOM05D000243 ORTHO05D001390 1.9e-06 56.6 56 50.0
Lalb_Chr09g0322321 Lupinus albus HOM05D000243 ORTHO05D000278 1.9e-06 56.6 88 37.5
Nn5g29633 Nelumbo nucifera HOM05D000243 ORTHO05D000278 1.9e-06 56.6 38 60.5
SEGI_40600 Sequoiadendron giganteum HOM05D000243 ORTHO05D000278 1.9e-06 56.6 61 45.9
SGA_v2.0_scaffold276G46620 Striga asiatica HOM05D000243 ORTHO05D000278 1.9e-06 56.6 38 57.9
unitig_899.g15520 Utricularia gibba HOM05D000243 ORTHO05D001390 1.9e-06 56.6 65 44.6
Aa31LG8G15680 Aethionema arabicum HOM05D000243 ORTHO05D000278 2.5e-06 56.2 38 52.6
MSTRG.23519 Avicennia marina HOM05D000243 ORTHO05D000278 2.5e-06 56.2 80 41.2
Cc07_g09610 Coffea canephora HOM05D000243 ORTHO05D000278 2.5e-06 56.2 38 57.9
DCAR_025947 Daucus carota HOM05D000243 ORTHO05D000278 2.5e-06 56.2 38 60.5
Glyma.01G174200 Glycine max HOM05D000243 ORTHO05D000278 2.5e-06 56.2 57 47.4
Lsat_1_v5_gn_4_107981 Lactuca sativa HOM05D000243 ORTHO05D001390 2.5e-06 56.2 53 50.9
Lalb_Chr08g0242341 Lupinus albus HOM05D000243 ORTHO05D000278 2.5e-06 56.2 64 46.9
SEGI_15986 Sequoiadendron giganteum HOM05D000243 ORTHO05D001390 2.5e-06 56.2 38 60.5
THA.LOC104821030 Tarenaya hassleriana HOM05D000243 ORTHO05D001390 2.5e-06 56.2 52 50.0
HPP92_019019 Vanilla planifolia HOM05D000243 ORTHO05D001390 2.5e-06 56.2 40 57.5
Atru.chr8.154 Acer truncatum HOM05D000243 ORTHO05D001390 3.2e-06 55.8 38 57.9
Actinidia26160 Actinidia chinensis HOM05D000243 ORTHO05D017228 3.2e-06 55.8 107 36.4
ATR0564G366 Amborella trichopoda HOM05D000243 ORTHO05D001390 3.2e-06 55.8 44 52.3
EL10Ac2g02562 Beta vulgaris HOM05D000243 ORTHO05D001390 3.2e-06 55.8 49 49.0
Cc06_g05470 Coffea canephora HOM05D000243 ORTHO05D001390 3.2e-06 55.8 40 55.0
Glyma.11G068800 Glycine max HOM05D000243 ORTHO05D000278 3.2e-06 55.8 38 57.9
Glyma.14G179600 Glycine max HOM05D000243 ORTHO05D000278 3.2e-06 55.8 38 60.5
Gorai.006G017300 Gossypium raimondii HOM05D000243 ORTHO05D001390 3.2e-06 55.8 56 50.0
HanXRQChr02g0041031 Helianthus annuus HOM05D000243 ORTHO05D001390 3.2e-06 55.8 63 44.4
Hma1.2p1_0224F.1_g094570 Hydrangea macrophylla HOM05D000243 ORTHO05D000278 3.2e-06 55.8 38 57.9
Manes.06G092500 Manihot esculenta HOM05D000243 ORTHO05D001390 3.2e-06 55.8 53 49.1
Phvul.002G031000 Phaseolus vulgaris HOM05D000243 ORTHO05D000278 3.2e-06 55.8 38 57.9
Phvul.008G179200 Phaseolus vulgaris HOM05D000243 ORTHO05D000278 3.2e-06 55.8 38 60.5
Sed0014757 Sechium edule HOM05D000243 ORTHO05D001390 3.2e-06 55.8 38 60.5
Solyc02g085160.1 Solanum lycopersicum HOM05D000243 ORTHO05D000278 3.2e-06 55.8 71 39.4
VMungo0647G0487 Vigna mungo HOM05D000243 ORTHO05D000278 3.2e-06 55.8 38 60.5
VMungo1215G3374 Vigna mungo HOM05D000243 ORTHO05D000278 3.2e-06 55.8 38 57.9
Actinidia17548 Actinidia chinensis HOM05D000243 ORTHO05D001390 4.2e-06 55.5 38 60.5
Aa31LG7G3600 Aethionema arabicum HOM05D000243 ORTHO05D001390 4.2e-06 55.5 38 60.5
CSS0041669 Camellia sinensis var. sinensis HOM05D000243 ORTHO05D000278 4.2e-06 55.5 49 49.0
CANSAT25G0162 Cannabis sativa HOM05D000243 ORTHO05D000278 4.2e-06 55.5 57 47.4
Dinv36092 Davidia involucrata HOM05D000243 ORTHO05D000278 4.2e-06 55.5 65 46.2
Glyma.09G238600 Glycine max HOM05D000243 ORTHO05D001390 4.2e-06 55.5 41 53.7
Gohir.A09G016500 Gossypium hirsutum HOM05D000243 ORTHO05D001390 4.2e-06 55.5 56 50.0
Lalb_Chr23g0270131 Lupinus albus HOM05D000243 ORTHO05D000278 4.2e-06 55.5 38 60.5
Lalb_Chr23g0270261 Lupinus albus HOM05D000243 ORTHO05D000278 4.2e-06 55.5 38 60.5
Manes.02G093800 Manihot esculenta HOM05D000243 ORTHO05D000278 4.2e-06 55.5 38 60.5
PSO384G0164 Papaver somniferum HOM05D000243 ORTHO05D001390 4.2e-06 55.5 40 57.5
PGR044G0023 Punica granatum HOM05D000243 ORTHO05D001390 4.2e-06 55.5 56 50.0
Rhsim08G0155000 Rhododendron simsii HOM05D000243 ORTHO05D001390 4.2e-06 55.5 45 53.3
Sed0022853 Sechium edule HOM05D000243 ORTHO05D001390 4.2e-06 55.5 54 50.0
Actinidia10363 Actinidia chinensis HOM05D000243 ORTHO05D000278 5.5e-06 55.1 39 56.4
BcaB07g31672 Brassica carinata HOM05D000243 ORTHO05D000278 5.5e-06 55.1 38 55.3
BcaC04g22911 Brassica carinata HOM05D000243 ORTHO05D000278 5.5e-06 55.1 38 55.3
A09p11840 Brassica napus HOM05D000243 ORTHO05D000278 5.5e-06 55.1 38 55.3
C09p13940 Brassica napus HOM05D000243 ORTHO05D000278 5.5e-06 55.1 38 55.3
BolC9t54286H Brassica oleracea HOM05D000243 ORTHO05D000278 5.5e-06 55.1 38 55.3
BraA09t36830Z Brassica rapa HOM05D000243 ORTHO05D000278 5.5e-06 55.1 38 55.3
Carub.0003s3250 Capsella rubella HOM05D000243 ORTHO05D000278 5.5e-06 55.1 38 55.3
Cfa004317 Carpinus fangiana HOM05D000243 ORTHO05D000278 5.5e-06 55.1 71 39.4
ECA232G3522 Erigeron canadensis HOM05D000243 ORTHO05D000278 5.5e-06 55.1 54 46.3
Migut.H00983 Erythranthe guttata HOM05D000243 ORTHO05D000278 5.5e-06 55.1 38 55.3
Eucgr.K02471 Eucalyptus grandis HOM05D000243 ORTHO05D001390 5.5e-06 55.1 38 57.9
Thhalv10022806m.g Eutrema salsugineum HOM05D000243 ORTHO05D000278 5.5e-06 55.1 38 55.3
Glyma.06G095200 Glycine max HOM05D000243 ORTHO05D000278 5.5e-06 55.1 101 35.6
HanXRQChr16g0530581 Helianthus annuus HOM05D000243 ORTHO05D000278 5.5e-06 55.1 38 57.9
Hma1.2p1_0735F.1_g210670 Hydrangea macrophylla HOM05D000243 ORTHO05D001390 5.5e-06 55.1 74 41.9
Lj4C38T5 Lonicera japonica HOM05D000243 ORTHO05D000278 5.5e-06 55.1 61 45.9
Lalb_Chr11g0065131 Lupinus albus HOM05D000243 ORTHO05D000278 5.5e-06 55.1 97 37.1
Os12g0124500 Oryza sativa ssp. japonica HOM05D000243 ORTHO05D001390 5.5e-06 55.1 45 51.1
Potri.004G126600 Populus trichocarpa HOM05D000243 ORTHO05D001390 5.5e-06 55.1 53 47.2
RcHm_v2.0_Chr7g0181371 Rosa chinensis HOM05D000243 ORTHO05D001390 5.5e-06 55.1 53 49.1
Sp3g31750 Schrenkiella parvula HOM05D000243 ORTHO05D000278 5.5e-06 55.1 38 55.3
SpUn0030_0080 Schrenkiella parvula HOM05D000243 ORTHO05D000278 5.5e-06 55.1 38 55.3
Sed0000818 Sechium edule HOM05D000243 ORTHO05D000278 5.5e-06 55.1 38 57.9
Sc10g0003600 Simmondsia chinensis HOM05D000243 ORTHO05D001390 5.5e-06 55.1 38 57.9
TAR628G1053 Trochodendron aralioides HOM05D000243 ORTHO05D000278 5.5e-06 55.1 38 57.9
AT2G18350 Arabidopsis thaliana HOM05D000243 ORTHO05D000278 7.2e-06 54.7 38 55.3
AUR62034421 Chenopodium quinoa HOM05D000243 ORTHO05D001390 7.2e-06 54.7 49 42.9
AUR62039797 Chenopodium quinoa HOM05D000243 ORTHO05D001390 7.2e-06 54.7 49 42.9
ClCG06G016220 Citrullus lanatus HOM05D000243 ORTHO05D001390 7.2e-06 54.7 38 60.5
MELO3C017171.2 Cucumis melo HOM05D000243 ORTHO05D001390 7.2e-06 54.7 38 60.5
Glyma.18G257200 Glycine max HOM05D000243 ORTHO05D001390 7.2e-06 54.7 47 48.9
HanXRQChr09g0274581 Helianthus annuus HOM05D000243 ORTHO05D000278 7.2e-06 54.7 63 42.9
Nitab4.5_0001960g0020 Nicotiana tabacum HOM05D000243 ORTHO05D000278 7.2e-06 54.7 104 33.7
Sed0015362 Sechium edule HOM05D000243 ORTHO05D001390 7.2e-06 54.7 38 60.5
Ah.11g048410 Amaranthus hybridus HOM05D000243 ORTHO05D001390 9.4e-06 54.3 53 50.9
BcaC06g33071 Brassica carinata HOM05D000243 ORTHO05D000278 9.4e-06 54.3 38 57.9
CANSAT80G2448 Cannabis sativa HOM05D000243 ORTHO05D001390 9.4e-06 54.3 63 47.6
Ca_04282_v3 Cicer arietinum L. HOM05D000243 ORTHO05D001390 9.4e-06 54.3 38 57.9
Ca_29694_v3 Cicer arietinum L. HOM05D000243 ORTHO05D001390 9.4e-06 54.3 38 57.9
Ca_29800_v3 Cicer arietinum L. HOM05D000243 ORTHO05D001390 9.4e-06 54.3 38 57.9
ClCG08G015020 Citrullus lanatus HOM05D000243 ORTHO05D000278 9.4e-06 54.3 68 38.2
MELO3C010949.2 Cucumis melo HOM05D000243 ORTHO05D000278 9.4e-06 54.3 68 38.2
CsaV3_2G028770 Cucumis sativus L. HOM05D000243 ORTHO05D000278 9.4e-06 54.3 68 38.2
Glyma.09G238700 Glycine max HOM05D000243 ORTHO05D001390 9.4e-06 54.3 40 52.5
Rhsim12G0156300 Rhododendron simsii HOM05D000243 ORTHO05D001390 9.4e-06 54.3 46 54.3
unitig_0.g2522 Utricularia gibba HOM05D000243 ORTHO05D001390 9.4e-06 54.3 49 49.0


User provided reference genes

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