Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim05G0076000 Rhododendron simsii HOM05D005911 ORTHO05D007565 5.0e-227 790.8 407 100.0
CSS0013374 Camellia sinensis var. sinensis HOM05D005911 ORTHO05D007565 4.7e-169 598.2 400 76.2
Actinidia17824 Actinidia chinensis HOM05D005911 ORTHO05D007565 3.7e-166 588.6 402 75.9
Dinv42087 Davidia involucrata HOM05D005911 ORTHO05D007565 1.1e-160 570.5 400 73.5
vmacro19435 Vaccinium macrocarpon HOM05D005911 ORTHO05D007565 1.9e-157 559.7 430 70.9
Atru.chr5.2957 Acer truncatum HOM05D005911 ORTHO05D007565 8.7e-147 524.2 401 67.6
QL11p042848 Quercus lobata HOM05D005911 ORTHO05D007565 1.1e-146 523.9 400 68.5
Prupe.8G101700 Prunus persica HOM05D005911 ORTHO05D007565 9.6e-146 520.8 397 66.8
TAR628G1003 Trochodendron aralioides HOM05D005911 ORTHO05D007565 2.8e-145 519.2 399 65.2
Cfa005027 Carpinus fangiana HOM05D005911 ORTHO05D007565 6.9e-144 514.6 401 66.3
MD10G1080400 Malus domestica HOM05D005911 ORTHO05D007565 2.6e-143 512.7 402 63.9
FAN24G3462 Fragaria x ananassa HOM05D005911 ORTHO05D007565 3.2e-141 505.8 421 63.4
RcHm_v2.0_Chr6g0263461 Rosa chinensis HOM05D005911 ORTHO05D007565 3.2e-141 505.8 399 65.7
FvH4_2g08380 Fragaria vesca HOM05D005911 ORTHO05D007565 4.2e-141 505.4 395 66.3
FAN20G0571 Fragaria x ananassa HOM05D005911 ORTHO05D007565 1.1e-136 490.7 415 61.4
GSVIVG01024153001 Vitis vinifera HOM05D005911 ORTHO05D007565 1.4e-136 490.3 419 62.3
CiPaw.06G137300 Carya illinoinensis HOM05D005911 ORTHO05D007565 4.0e-136 488.8 397 64.0
Cpa.g.sc62.118 Carica papaya HOM05D005911 ORTHO05D007565 3.4e-135 485.7 386 66.6
Lj4g0018405 Lotus japonicus HOM05D005911 ORTHO05D007565 9.9e-135 484.2 386 65.3
TPR.G20990 Trifolium pratense HOM05D005911 ORTHO05D007565 1.7e-134 483.4 401 62.8
Medtr4g084100 Medicago truncatula HOM05D005911 ORTHO05D007565 2.9e-134 482.6 399 63.7
Oeu014335.1 Olea europaea HOM05D005911 ORTHO05D007565 2.9e-134 482.6 379 65.7
Potri.004G152100 Populus trichocarpa HOM05D005911 ORTHO05D007565 2.9e-134 482.6 390 64.9
Lalb_Chr16g0385211 Lupinus albus HOM05D005911 ORTHO05D007565 6.4e-134 481.5 396 63.9
Nn1g05068 Nelumbo nucifera HOM05D005911 ORTHO05D007565 2.5e-133 479.6 391 62.9
Ca_18760_v3 Cicer arietinum L. HOM05D005911 ORTHO05D007565 4.2e-133 478.8 403 62.3
Manes.17G099400 Manihot esculenta HOM05D005911 ORTHO05D007565 7.1e-133 478.0 420 59.8
TWI31G0066 Tripterygium wilfordii HOM05D005911 ORTHO05D007565 2.1e-132 476.5 401 64.1
DCAR_003638 Daucus carota HOM05D005911 ORTHO05D007565 3.5e-132 475.7 397 62.5
Cc02_g17800 Coffea canephora HOM05D005911 ORTHO05D007565 1.8e-131 473.4 423 61.2
Peaxi162Scf00016g00941 Petunia axillaris HOM05D005911 ORTHO05D007565 8.7e-131 471.1 397 61.5
Duzib248G0238 Durio zibethinus HOM05D005911 ORTHO05D007565 1.1e-130 470.7 391 61.6
Thecc.02G123100 Theobroma cacao HOM05D005911 ORTHO05D007565 1.5e-130 470.3 391 61.6
MSTRG.20102 Avicennia marina HOM05D005911 ORTHO05D007565 1.9e-130 469.9 398 63.1
Migut.N01227 Erythranthe guttata HOM05D005911 ORTHO05D007565 1.9e-130 469.9 394 62.7
Nitab4.5_0008989g0030 Nicotiana tabacum HOM05D005911 ORTHO05D007565 2.5e-130 469.5 395 61.8
Sed0023974 Sechium edule HOM05D005911 ORTHO05D007565 4.3e-130 468.8 386 61.9
Gohir.D04G144200 Gossypium hirsutum HOM05D005911 ORTHO05D007565 9.6e-130 467.6 390 60.8
Nitab4.5_0001794g0010 Nicotiana tabacum HOM05D005911 ORTHO05D007565 1.3e-129 467.2 396 60.6
Sopen01g051640 Solanum pennellii HOM05D005911 ORTHO05D007565 2.1e-129 466.5 396 59.3
Gorai.012G129800 Gossypium raimondii HOM05D005911 ORTHO05D007565 2.8e-129 466.1 390 60.5
Solyc01g109450.3 Solanum lycopersicum HOM05D005911 ORTHO05D007565 2.8e-129 466.1 396 59.1
CAN.G322.116 Capsicum annuum HOM05D005911 ORTHO05D007565 3.7e-129 465.7 396 59.8
SalBow3G0191 Salvia bowleyana HOM05D005911 ORTHO05D007565 8.2e-129 464.5 394 61.2
Glyma.20G019800 Glycine max HOM05D005911 ORTHO05D007565 1.1e-128 464.2 388 63.1
Phvul.007G233200 Phaseolus vulgaris HOM05D005911 ORTHO05D007565 1.4e-128 463.8 393 61.3
PGSC0003DMG400025190 Solanum tuberosum HOM05D005911 ORTHO05D007565 6.9e-128 461.5 402 59.0
ClCG02G005220 Citrullus lanatus HOM05D005911 ORTHO05D007565 7.6e-127 458.0 381 62.5
CsaV3_7G023300 Cucumis sativus L. HOM05D005911 ORTHO05D007565 1.3e-126 457.2 381 62.5
COL.COLO4_32449 Corchorus olitorius HOM05D005911 ORTHO05D007565 1.1e-125 454.1 375 61.6
MBI16_g17455_MAGBIO Magnolia biondii HOM05D005911 ORTHO05D007565 4.2e-125 452.2 416 58.4
arahy.Tifrunner.gnm1.ann1.CA4G6V Arachis hypogaea HOM05D005911 ORTHO05D007565 7.1e-125 451.4 399 60.9
ECA236G0345 Erigeron canadensis HOM05D005911 ORTHO05D007565 1.2e-124 450.7 388 62.4
FAN15G1485 Fragaria x ananassa HOM05D005911 ORTHO05D007565 1.2e-124 450.7 421 58.2
VMungo0720G1659 Vigna mungo HOM05D005911 ORTHO05D007565 9.7e-122 441.0 430 55.8
Sabra04G0100900 Salix brachista HOM05D005911 ORTHO05D007565 6.3e-121 438.3 420 58.3
HanXRQChr16g0504971 Helianthus annuus HOM05D005911 ORTHO05D007565 6.9e-120 434.9 383 60.6
SGA_v2.0_scaffold44G16630 Striga asiatica HOM05D005911 ORTHO05D007565 1.2e-119 434.1 418 56.2
Hma1.2p1_0066F.1_g036670 Hydrangea macrophylla HOM05D005911 ORTHO05D007565 5.9e-119 431.8 323 68.1
Psat3g133040 Pisum sativum HOM05D005911 ORTHO05D007565 1.3e-118 430.6 357 63.3
Haze_02358 Corylus avellana HOM05D005911 ORTHO05D009502 5.0e-118 428.7 421 56.3
Aqoxy5G01675 Aquilegia oxysepala HOM05D005911 ORTHO05D007565 8.5e-118 427.9 386 59.3
AUR62011353 Chenopodium quinoa HOM05D005911 ORTHO05D007565 3.2e-117 426.0 393 56.7
AUR62016709 Chenopodium quinoa HOM05D005911 ORTHO05D007565 6.1e-116 421.8 392 56.1
MELO3C012560.2 Cucumis melo HOM05D005911 ORTHO05D007565 3.3e-114 416.0 401 57.6
PGR042G3082 Punica granatum HOM05D005911 ORTHO05D009502 4.3e-114 415.6 386 58.3
Hund00288 Selenicereus undatus HOM05D005911 ORTHO05D007565 4.3e-114 415.6 396 55.6
EL10Ac9g21750 Beta vulgaris HOM05D005911 ORTHO05D007565 2.8e-113 412.9 394 54.1
Ciclev10029888m.g Citrus clementina HOM05D005911 ORTHO05D007565 1.0e-110 404.4 327 63.9
ATR0733G150 Amborella trichopoda HOM05D005911 ORTHO05D007565 3.2e-109 399.4 380 57.4
Sp1g36210 Schrenkiella parvula HOM05D005911 ORTHO05D007565 1.1e-106 391.0 379 54.6
Gohir.A04G104400 Gossypium hirsutum HOM05D005911 ORTHO05D007565 1.7e-105 387.1 390 52.1
Lsat_1_v5_gn_7_89660 Lactuca sativa HOM05D005911 ORTHO05D007565 3.1e-104 382.9 391 56.5
THA.LOC104804910 Tarenaya hassleriana HOM05D005911 ORTHO05D007565 4.1e-104 382.5 387 54.8
Carub.0001s3853 Capsella rubella HOM05D005911 ORTHO05D007565 7.0e-104 381.7 387 53.7
Thhalv10011559m.g Eutrema salsugineum HOM05D005911 ORTHO05D007565 2.6e-103 379.8 391 52.9
AL1G56310 Arabidopsis lyrata HOM05D005911 ORTHO05D007565 4.5e-103 379.0 389 54.2
AT1G49350 Arabidopsis thaliana HOM05D005911 ORTHO05D007565 1.3e-102 377.5 387 53.7
Nitab4.5_0000443g0010 Nicotiana tabacum HOM05D005911 ORTHO05D007565 6.5e-102 375.2 383 55.6
Lj9A367G52 Lonicera japonica HOM05D005911 ORTHO05D007565 1.1e-101 374.4 288 67.0
BcaB02g11057 Brassica carinata HOM05D005911 ORTHO05D007565 7.2e-101 371.7 391 52.9
BraA05t20973Z Brassica rapa HOM05D005911 ORTHO05D007565 4.7e-100 369.0 386 52.8
Aa31LG10G4600 Aethionema arabicum HOM05D005713 ORTHO05D007751 8.0e-100 368.2 386 53.1
A05p20650 Brassica napus HOM05D005911 ORTHO05D007565 1.5e-98 364.0 386 53.4
BcaC05g27521 Brassica carinata HOM05D005911 ORTHO05D007565 2.0e-98 363.6 386 52.3
Potri.004G151600 Populus trichocarpa HOM05D005911 ORTHO05D007565 3.3e-98 362.8 308 62.0
C05p34650 Brassica napus HOM05D005911 ORTHO05D007565 5.7e-98 362.1 386 52.3
BolC5t32220H Brassica oleracea HOM05D005911 ORTHO05D007565 5.7e-98 362.1 386 52.3
Eucgr.G01900 Eucalyptus grandis HOM05D005911 ORTHO05D007565 1.7e-97 360.5 335 56.1
Eucgr.G00462 Eucalyptus grandis HOM05D005911 ORTHO05D007565 2.8e-97 359.8 335 55.8
Os05g0185700 Oryza sativa ssp. japonica HOM05D005911 ORTHO05D007565 6.3e-97 358.6 386 49.5
Sc14g0001790 Simmondsia chinensis HOM05D005911 ORTHO05D007565 3.1e-96 356.3 376 51.6
BcaC05g27500 Brassica carinata HOM05D005911 ORTHO05D007565 7.0e-96 355.1 386 51.6
SEGI_31956 Sequoiadendron giganteum HOM05D005911 ORTHO05D007565 3.5e-95 352.8 404 49.8
CAN.G149.23 Capsicum annuum HOM05D005911 ORTHO05D007565 8.5e-94 348.2 382 48.4
BolC5t32198H Brassica oleracea HOM05D005911 ORTHO05D007565 1.1e-88 331.3 408 47.8
C05p34970 Brassica napus HOM05D005911 ORTHO05D007565 2.3e-83 313.5 334 52.1
AL1G56510 Arabidopsis lyrata HOM05D003089 ORTHO05D003544 3.4e-82 309.7 307 55.7
FAN27G2671 Fragaria x ananassa HOM05D005911 ORTHO05D007565 4.5e-79 299.3 391 46.3
unitig_22.g6840 Utricularia gibba HOM05D005911 ORTHO05D007565 2.5e-77 293.5 392 45.2
CDE02G3889 Ceratophyllum demersum HOM05D005911 ORTHO05D007565 1.5e-74 284.3 400 43.5
Zm00001eb346550 Zea mays HOM05D005911 ORTHO05D007565 8.3e-73 278.5 321 49.2
Sc14g0001910 Simmondsia chinensis HOM05D005911 ORTHO05D007565 2.7e-71 273.5 311 48.9
AagrBONN_evm.TU.Sc2ySwM_117.291 Anthoceros agrestis HOM05D005911 ORTHO05D007565 6.6e-70 268.9 363 46.8
Pp3c15_14160 Physcomitrium patens HOM05D005911 ORTHO05D007565 8.9e-67 258.5 401 42.1
SGA_v2.0_scaffold55G19804 Striga asiatica HOM05D005911 ORTHO05D007565 1.1e-59 235.0 362 41.7
CBR_g27891 Chara braunii HOM05D005911 ORTHO05D007565 6.4e-57 225.7 396 39.4
CARHR039360 Cardamine hirsuta HOM05D005911 ORTHO05D007565 3.5e-55 219.9 256 47.7
Mapoly0044s0080 Marchantia polymorpha HOM05D005911 ORTHO05D007565 8.9e-51 205.3 331 37.8
Ah.01g006180 Amaranthus hybridus HOM05D002934 ORTHO05D003937 1.4e-43 181.4 189 50.3
CARHR039340 Cardamine hirsuta HOM05D005911 ORTHO05D007565 6.4e-41 172.6 196 51.0
MCO11G507 Micromonas commoda HOM05D005911 ORTHO05D007565 1.2e-39 168.3 374 34.0
A05p20720 Brassica napus HOM05D005911 ORTHO05D007565 8.1e-36 155.6 187 50.3
BraA05t20979Z Brassica rapa HOM05D005911 ORTHO05D007565 8.1e-36 155.6 187 50.3
Eucgr.G01892 Eucalyptus grandis HOM05D005911 ORTHO05D007565 9.0e-35 152.1 176 50.0
Gorai.008G153200 Gossypium raimondii HOM05D005911 ORTHO05D007565 2.4e-32 144.1 151 48.3
PRCOL_00000481 Prasinoderma coloniale HOM05D005911 ORTHO05D007565 4.2e-32 143.3 347 32.3
Eucgr.G00468 Eucalyptus grandis HOM05D005911 ORTHO05D007565 9.3e-32 142.1 154 48.7
arahy.Tifrunner.gnm1.ann1.IUSJ9T Arachis hypogaea HOM05D005911 ORTHO05D007565 1.2e-31 141.7 380 30.8
Nitab4.5_0000776g0050 Nicotiana tabacum HOM05D005911 ORTHO05D007565 1.5e-29 134.8 111 60.4
Ciclev10013569m.g Citrus clementina HOM05D005911 ORTHO05D007565 1.9e-29 134.4 73 84.9
TAR371G0586 Trochodendron aralioides HOM05D005911 ORTHO05D007565 1.9e-29 134.4 162 48.1
AagrBONN_evm.TU.Sc2ySwM_228.5516 Anthoceros agrestis HOM05D005911 ORTHO05D007565 8.1e-28 129.0 123 55.3
Cre17.g701100 Chlamydomonas reinhardtii HOM05D005911 ORTHO05D007565 1.1e-27 128.6 197 42.1
Ciclev10003801m.g Citrus clementina HOM05D005911 ORTHO05D007565 4.2e-24 116.7 70 80.0
Lj9A367G53 Lonicera japonica HOM05D005911 ORTHO05D007565 4.6e-23 113.2 82 70.7
Ciclev10018182m.g Citrus clementina HOM05D005911 ORTHO05D007565 3.9e-22 110.2 78 71.8
TAR371G0927 Trochodendron aralioides HOM05D005911 ORTHO05D007565 3.7e-20 103.6 109 53.2
CARHR039370 Cardamine hirsuta HOM05D005911 ORTHO05D007565 8.1e-20 102.4 114 51.8
Sc14g0001900 Simmondsia chinensis HOM05D005911 ORTHO05D007565 6.9e-19 99.4 77 62.3
Gohir.D04G144225 Gossypium hirsutum HOM05D005911 ORTHO05D007565 9.6e-13 79.0 71 56.3
Gorai.012G129900 Gossypium raimondii HOM05D005911 ORTHO05D007565 9.6e-13 79.0 71 56.3
QL04p035577 Quercus lobata HOM05D005911 ORTHO05D007565 1.2e-07 62.0 68 50.0
QL04p046160 Quercus lobata HOM05D005911 ORTHO05D338257 2.7e-07 60.8 68 50.0
QL11p051325 Quercus lobata HOM05D005911 ORTHO05D007565 4.6e-07 60.1 42 73.8


User provided reference genes

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