Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim05G0069500 Rhododendron simsii HOM05D005703 ORTHO05D006643 2.7e-175 618.6 320 100.0
CSS0001334 Camellia sinensis var. sinensis HOM05D005703 ORTHO05D006643 4.3e-125 451.8 285 80.0
Hma1.2p1_0066F.1_g035910 Hydrangea macrophylla HOM05D005703 ORTHO05D006643 1.4e-123 446.8 288 77.4
Actinidia02238 Actinidia chinensis HOM05D005703 ORTHO05D006643 2.4e-123 446.0 287 79.8
Actinidia27862 Actinidia chinensis HOM05D005703 ORTHO05D006643 3.4e-122 442.2 285 79.6
PGSC0003DMG400030971 Solanum tuberosum HOM05D005703 ORTHO05D006643 1.9e-120 436.4 297 73.4
RcHm_v2.0_Chr6g0266981 Rosa chinensis HOM05D005703 ORTHO05D006643 4.2e-120 435.3 281 77.9
Cpa.g.sc150.43 Carica papaya HOM05D005703 ORTHO05D006643 2.7e-119 432.6 314 72.0
Nn6g32200 Nelumbo nucifera HOM05D005703 ORTHO05D006643 3.5e-119 432.2 281 76.9
Potri.004G160800 Populus trichocarpa HOM05D005703 ORTHO05D006643 3.5e-119 432.2 281 77.6
FvH4_2g10050 Fragaria vesca HOM05D005703 ORTHO05D006643 6.0e-119 431.4 289 74.7
Sopen01g052320 Solanum pennellii HOM05D005703 ORTHO05D006643 3.0e-118 429.1 291 73.5
CiPaw.06G130900 Carya illinoinensis HOM05D005703 ORTHO05D006643 3.9e-118 428.7 316 70.9
QL11p045612 Quercus lobata HOM05D005703 ORTHO05D006643 5.1e-118 428.3 281 77.6
Solyc01g110160.4 Solanum lycopersicum HOM05D005703 ORTHO05D006643 5.1e-118 428.3 291 73.2
GSVIVG01024205001 Vitis vinifera HOM05D005703 ORTHO05D006643 1.1e-117 427.2 312 69.2
Atru.chr5.3109 Acer truncatum HOM05D005703 ORTHO05D006643 2.5e-117 426.0 297 72.1
MD10G1066100 Malus domestica HOM05D005703 ORTHO05D006643 4.3e-117 425.2 280 74.6
TWI31G0330 Tripterygium wilfordii HOM05D005703 ORTHO05D006643 1.3e-116 423.7 293 74.1
Sabra04G0107600 Salix brachista HOM05D005703 ORTHO05D006643 2.1e-116 422.9 287 74.6
Peaxi162Scf00016g00231 Petunia axillaris HOM05D005703 ORTHO05D006643 3.6e-116 422.2 294 71.4
Manes.11G087800 Manihot esculenta HOM05D005703 ORTHO05D006643 6.2e-116 421.4 281 75.4
Aqoxy5G01507 Aquilegia oxysepala HOM05D005703 ORTHO05D006643 8.1e-116 421.0 282 74.5
Eucgr.D00178 Eucalyptus grandis HOM05D005703 ORTHO05D006643 1.1e-115 420.6 281 74.0
MSTRG.20056 Avicennia marina HOM05D005703 ORTHO05D006643 1.4e-115 420.2 290 72.4
CsaV3_7G000370 Cucumis sativus L. HOM05D005703 ORTHO05D006643 2.4e-115 419.5 286 74.1
FAN15G0097 Fragaria x ananassa HOM05D005703 ORTHO05D006643 2.4e-115 419.5 338 65.4
MELO3C002791.2 Cucumis melo HOM05D005703 ORTHO05D006643 5.3e-115 418.3 286 73.1
Thecc.02G078100 Theobroma cacao HOM05D005703 ORTHO05D006643 9.0e-115 417.5 280 73.9
VMungo1127G0812 Vigna mungo HOM05D005703 ORTHO05D006643 2.0e-114 416.4 285 73.3
COL.COLO4_26014 Corchorus olitorius HOM05D005703 ORTHO05D006643 2.6e-114 416.0 313 67.7
Lj3g0017018 Lotus japonicus HOM05D005703 ORTHO05D006643 5.8e-114 414.8 286 70.3
Ciclev10028680m.g Citrus clementina HOM05D005703 ORTHO05D006643 6.4e-113 411.4 336 65.2
Gohir.D12G030600 Gossypium hirsutum HOM05D005703 ORTHO05D006643 8.4e-113 411.0 280 71.8
Glyma.11G112900 Glycine max HOM05D005703 ORTHO05D006643 1.1e-112 410.6 285 71.6
Lalb_Chr03g0025421 Lupinus albus HOM05D005703 ORTHO05D006643 1.4e-112 410.2 285 72.3
CARHR112270 Cardamine hirsuta HOM05D005703 ORTHO05D006643 2.4e-112 409.5 297 68.0
Gorai.008G031500 Gossypium raimondii HOM05D005703 ORTHO05D006643 3.2e-112 409.1 280 71.1
TPR.G16235 Trifolium pratense HOM05D005703 ORTHO05D006643 4.2e-112 408.7 289 69.6
AT2G21385 Arabidopsis thaliana HOM05D005703 ORTHO05D006643 5.5e-112 408.3 308 65.9
PSO170G4951 Papaver somniferum HOM05D005703 ORTHO05D006643 5.5e-112 408.3 289 72.0
Glyma.12G038800 Glycine max HOM05D005703 ORTHO05D006643 3.5e-111 405.6 285 70.9
Sc14g0002020 Simmondsia chinensis HOM05D005703 ORTHO05D006643 3.5e-111 405.6 287 70.4
THA.LOC104824803 Tarenaya hassleriana HOM05D005703 ORTHO05D006643 3.5e-111 405.6 281 71.5
AL4G10560 Arabidopsis lyrata HOM05D005703 ORTHO05D006643 4.6e-111 405.2 297 66.3
Migut.B00193 Erythranthe guttata HOM05D005703 ORTHO05D006643 6.0e-111 404.8 282 72.3
Carub.0004s0043 Capsella rubella HOM05D005703 ORTHO05D006643 7.9e-111 404.4 297 66.7
Sp4g00560 Schrenkiella parvula HOM05D005703 ORTHO05D006643 1.0e-110 404.1 296 67.9
Aa31LG7G15130 Aethionema arabicum HOM05D005703 ORTHO05D001153 1.3e-110 403.7 285 70.5
AUR62010417 Chenopodium quinoa HOM05D005703 ORTHO05D006643 5.1e-110 401.7 301 69.1
Ca_20918_v3 Cicer arietinum L. HOM05D005703 ORTHO05D006643 5.1e-110 401.7 282 69.5
ATR0661G148 Amborella trichopoda HOM05D005703 ORTHO05D006643 6.7e-110 401.4 280 71.4
ECA234G1754 Erigeron canadensis HOM05D005703 ORTHO05D006643 1.9e-109 399.8 276 70.7
Medtr4g071190 Medicago truncatula HOM05D005703 ORTHO05D006643 2.5e-109 399.4 304 66.4
AUR62016798 Chenopodium quinoa HOM05D005703 ORTHO05D006643 3.3e-109 399.1 316 65.8
Prupe.8G088000 Prunus persica HOM05D005703 ORTHO05D006643 3.3e-109 399.1 289 71.6
HanXRQChr12g0373591 Helianthus annuus HOM05D005703 ORTHO05D006643 2.1e-108 396.4 281 69.4
arahy.Tifrunner.gnm1.ann1.YBLQ63 Arachis hypogaea HOM05D005703 ORTHO05D006643 3.7e-108 395.6 290 69.0
A09p58290 Brassica napus HOM05D005703 ORTHO05D006643 4.0e-107 392.1 298 65.1
C08p41580 Brassica napus HOM05D005703 ORTHO05D006643 5.3e-107 391.7 286 67.1
CDE09G1081 Ceratophyllum demersum HOM05D005703 ORTHO05D006643 9.0e-107 391.0 318 64.5
BraA09t41216Z Brassica rapa HOM05D005703 ORTHO05D006643 1.2e-106 390.6 286 67.5
BolC8t51720H Brassica oleracea HOM05D005703 ORTHO05D006643 7.6e-106 387.9 286 66.4
vmacro17444 Vaccinium macrocarpon HOM05D005703 ORTHO05D006643 7.6e-106 387.9 288 75.3
Lsat_1_v5_gn_5_125081 Lactuca sativa HOM05D005703 ORTHO05D006643 1.7e-105 386.7 309 66.3
Dinv23475 Davidia involucrata HOM05D005703 ORTHO05D006643 2.2e-105 386.3 283 72.1
Psat7g139960 Pisum sativum HOM05D005703 ORTHO05D006643 2.2e-105 386.3 291 67.7
HPP92_025877 Vanilla planifolia HOM05D005703 ORTHO05D006643 3.8e-105 385.6 279 68.1
Nitab4.5_0011132g0020 Nicotiana tabacum HOM05D005703 ORTHO05D006643 8.4e-105 384.4 283 69.6
Phvul.011G040900 Phaseolus vulgaris HOM05D005703 ORTHO05D006643 7.1e-104 381.3 264 72.3
Os09g0531100 Oryza sativa ssp. japonica HOM05D005703 ORTHO05D006643 4.6e-103 378.6 280 67.5
Zm00001eb353590 Zea mays HOM05D005703 ORTHO05D006643 6.7e-102 374.8 280 66.4
Hma1.2p1_0066F.1_g035920 Hydrangea macrophylla HOM05D005703 ORTHO05D006643 2.8e-100 369.4 282 67.7
Thhalv10000241m.g Eutrema salsugineum HOM05D005703 ORTHO05D006643 9.0e-99 364.4 255 70.2
Haze_02308 Corylus avellana HOM05D005703 ORTHO05D006643 2.6e-98 362.8 289 67.1
SalBow6G5125 Salvia bowleyana HOM05D005703 ORTHO05D006643 8.5e-97 357.8 290 62.8
SGA_v2.0_scaffold58G20483 Striga asiatica HOM05D005703 ORTHO05D006643 1.4e-96 357.1 288 64.6
arahy.Tifrunner.gnm1.ann1.R55P3J Arachis hypogaea HOM05D005703 ORTHO05D006643 1.6e-95 353.6 263 68.8
MELO3C013421.2 Cucumis melo HOM05D005703 ORTHO05D006643 3.3e-93 345.9 281 64.8
ClCG02G004580 Citrullus lanatus HOM05D005703 ORTHO05D006643 8.2e-92 341.3 286 64.0
DCAR_022931 Daucus carota HOM05D005703 ORTHO05D006643 1.5e-90 337.0 287 59.6
EL10Ac9g21670 Beta vulgaris HOM05D005703 ORTHO05D006643 7.2e-88 328.2 302 58.3
FAN27G2042 Fragaria x ananassa HOM05D005703 ORTHO05D006643 2.3e-86 323.2 289 59.5
Nitab4.5_0002723g0090 Nicotiana tabacum HOM05D005703 ORTHO05D006643 3.9e-86 322.4 278 62.6
FAN24G3327 Fragaria x ananassa HOM05D005703 ORTHO05D006643 6.7e-86 321.6 289 59.5
FAN20G2472 Fragaria x ananassa HOM05D005703 ORTHO05D006643 1.5e-85 320.5 290 59.3
Cc02_g17090 Coffea canephora HOM05D005703 ORTHO05D006643 3.1e-83 312.8 197 77.7
CANSAT11G2682 Cannabis sativa HOM05D005703 ORTHO05D006643 9.1e-83 311.2 290 58.6
Hund00227 Selenicereus undatus HOM05D005703 ORTHO05D006643 2.0e-82 310.1 285 59.3
Sed0007704 Sechium edule HOM05D005703 ORTHO05D006643 4.5e-82 308.9 214 73.4
Lj5C191G8 Lonicera japonica HOM05D005703 ORTHO05D006643 1.4e-80 303.9 310 55.8
Cfa005074 Carpinus fangiana HOM05D005703 ORTHO05D006643 5.7e-77 292.0 208 73.6
Pp3c22_4620 Physcomitrium patens HOM05D005703 ORTHO05D006643 6.3e-76 288.5 280 53.6
Mapoly0084s0041 Marchantia polymorpha HOM05D005703 ORTHO05D006643 1.8e-75 287.0 272 53.7
unitig_0.g54 Utricularia gibba HOM05D005703 ORTHO05D006643 1.3e-73 280.8 198 67.2
SMO356G0671 Selaginella moellendorffii HOM05D005703 ORTHO05D006643 1.5e-72 277.3 272 52.9
SMO290G0004 Selaginella moellendorffii HOM05D005703 ORTHO05D006643 1.0e-70 271.2 278 51.8
SMO290G0013 Selaginella moellendorffii HOM05D005703 ORTHO05D006643 3.0e-70 269.6 274 52.2
BcaB06g27102 Brassica carinata HOM05D005703 ORTHO05D006643 3.7e-68 262.7 259 55.2
SMO356G0278 Selaginella moellendorffii HOM05D005703 ORTHO05D006643 2.7e-66 256.5 274 50.4
BraA01t01909Z Brassica rapa HOM05D005703 ORTHO05D006643 3.4e-61 239.6 206 61.7
Gohir.A12G041600 Gossypium hirsutum HOM05D005703 ORTHO05D006643 3.7e-60 236.1 167 70.1
Duzib132G0736 Durio zibethinus HOM05D005703 ORTHO05D006643 1.5e-56 224.2 352 42.0
AagrBONN_evm.TU.Sc2ySwM_228.378 Anthoceros agrestis HOM05D005703 ORTHO05D006643 3.7e-52 209.5 200 55.5
Thhalv10005656m.g Eutrema salsugineum HOM05D005703 ORTHO05D006643 3.7e-52 209.5 161 65.2
TAR381G0871 Trochodendron aralioides HOM05D005703 ORTHO05D006643 4.4e-45 186.0 133 68.4
BolC1t00937H Brassica oleracea HOM05D005703 ORTHO05D006643 5.4e-43 179.1 144 63.9
MBI01_g29867_MAGBIO Magnolia biondii HOM05D005703 ORTHO05D006643 2.0e-42 177.2 114 77.2
C01p09750 Brassica napus HOM05D005703 ORTHO05D006643 8.0e-39 165.2 185 51.4
BolC4t23697H Brassica oleracea HOM05D005703 ORTHO05D006643 2.4e-35 153.7 182 48.9
BolC2t11489H Brassica oleracea HOM05D005703 ORTHO05D006643 1.0e-33 148.3 184 46.7
BcaC04g19425 Brassica carinata HOM05D005703 ORTHO05D006643 2.3e-33 147.1 224 44.2
C09p55850 Brassica napus HOM05D005703 ORTHO05D006643 5.0e-33 146.0 208 45.7
C04p21760 Brassica napus HOM05D005703 ORTHO05D006643 5.6e-32 142.5 206 43.7
CBR_g49480 Chara braunii HOM05D005703 ORTHO05D006643 5.6e-32 142.5 244 34.4
Potri.009G121902 Populus trichocarpa HOM05D005703 ORTHO05D006643 5.2e-30 136.0 104 68.3
QL11p045593 Quercus lobata HOM05D005703 ORTHO05D006643 9.2e-27 125.2 72 80.6
BcaC01g06448 Brassica carinata HOM05D005703 ORTHO05D006643 3.9e-25 119.8 135 51.1
C02p54250 Brassica napus HOM05D005703 ORTHO05D006643 3.9e-25 119.8 210 39.0
Cc02_g17080 Coffea canephora HOM05D005703 ORTHO05D006643 3.9e-25 119.8 80 72.5
Cre08.g372000 Chlamydomonas reinhardtii HOM05D005703 ORTHO05D006643 1.9e-24 117.5 285 29.5
PRCOL_00000952 Prasinoderma coloniale HOM05D005703 ORTHO05D006643 2.5e-24 117.1 244 31.1
SEGI_33335 Sequoiadendron giganteum HOM05D005703 ORTHO05D006643 9.5e-24 115.2 94 61.7
HanXRQChr14g0433731 Helianthus annuus HOM05D005703 ORTHO05D006643 1.2e-23 114.8 79 73.4
QL11p045598 Quercus lobata HOM05D005703 ORTHO05D006643 1.1e-22 111.7 71 76.1
MBI01_g29866_MAGBIO Magnolia biondii HOM05D005703 ORTHO05D006643 9.9e-21 105.1 72 69.4
unitig_0.g53 Utricularia gibba HOM05D005703 ORTHO05D006643 3.2e-19 100.1 85 60.0
C03p15450 Brassica napus HOM05D005703 ORTHO05D006643 8.7e-17 92.0 158 38.0
C03p56750 Brassica napus HOM05D005703 ORTHO05D006643 1.1e-14 85.1 128 40.6
BcaC09g52221 Brassica carinata HOM05D005703 ORTHO05D006643 9.0e-14 82.0 60 66.7
BolC1t00936H Brassica oleracea HOM05D005703 ORTHO05D006643 8.4e-12 75.5 60 61.7
Oeu037764.1 Olea europaea HOM05D005703 ORTHO05D006643 1.1e-11 75.1 37 91.9
C03p56740 Brassica napus HOM05D005703 ORTHO05D006643 1.9e-11 74.3 76 52.6
CAN.G878.5 Capsicum annuum HOM05D000269 ORTHO05D000216 5.4e-11 72.8 93 45.2
AUR62033094 Chenopodium quinoa HOM05D005703 ORTHO05D006643 1.7e-09 67.8 50 64.0
Lsat_1_v5_gn_1_61800 Lactuca sativa HOM05D005428 ORTHO05D002547 1.1e-08 65.1 57 59.6
MCO02G267 Micromonas commoda HOM05D005703 ORTHO05D006643 1.6e-07 61.2 137 32.1
TAR381G1022 Trochodendron aralioides HOM05D005703 ORTHO05D006643 3.6e-07 60.1 37 75.7


User provided reference genes

Program Settings