Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim05G0068100 Rhododendron simsii HOM05D006147 ORTHO05D007501 7.3e-220 766.9 387 100.0
vmacro17420 Vaccinium macrocarpon HOM05D006147 ORTHO05D007501 2.0e-161 572.8 405 74.8
Cfa005114 Carpinus fangiana HOM05D006147 ORTHO05D007501 5.9e-145 518.1 383 70.5
TAR628G0064 Trochodendron aralioides HOM05D006147 ORTHO05D007501 1.0e-144 517.3 384 68.5
QL11p046465 Quercus lobata HOM05D006147 ORTHO05D007501 1.5e-143 513.5 383 68.7
Prupe.8G083600 Prunus persica HOM05D006147 ORTHO05D007501 1.2e-142 510.4 384 68.5
MD05G1055500 Malus domestica HOM05D006147 ORTHO05D007501 1.0e-141 507.3 384 68.0
FAN27G3378 Fragaria x ananassa HOM05D006147 ORTHO05D007501 5.2e-141 505.0 383 67.1
Cpa.g.sc150.15 Carica papaya HOM05D006147 ORTHO05D007501 6.8e-141 504.6 381 69.8
TWI31G1450 Tripterygium wilfordii HOM05D006147 ORTHO05D007501 8.8e-141 504.2 386 68.1
COL.COLO4_26048 Corchorus olitorius HOM05D006147 ORTHO05D007501 3.4e-140 502.3 379 69.1
RcHm_v2.0_Chr6g0267981 Rosa chinensis HOM05D006147 ORTHO05D007501 4.4e-140 501.9 383 67.4
CSS0016386 Camellia sinensis var. sinensis HOM05D006147 ORTHO05D007501 9.8e-140 500.7 303 82.2
MD10G1062800 Malus domestica HOM05D006147 ORTHO05D007501 1.7e-139 500.0 384 67.2
Actinidia02248 Actinidia chinensis HOM05D006147 ORTHO05D007501 2.8e-139 499.2 303 83.2
CSS0033675 Camellia sinensis var. sinensis HOM05D006147 ORTHO05D007501 6.3e-139 498.0 303 81.5
Gohir.D02G220700 Gossypium hirsutum HOM05D006147 ORTHO05D007501 8.3e-139 497.7 376 69.7
GSVIVG01024169001 Vitis vinifera HOM05D006147 ORTHO05D007501 8.3e-139 497.7 383 67.6
Migut.N01278 Erythranthe guttata HOM05D006147 ORTHO05D007501 1.4e-138 496.9 383 66.8
PGSC0003DMG402031287 Solanum tuberosum HOM05D006147 ORTHO05D007501 3.1e-138 495.7 381 66.1
Solyc09g091970.4 Solanum lycopersicum HOM05D006147 ORTHO05D007501 1.6e-137 493.4 381 65.6
CiPaw.05G073500 Carya illinoinensis HOM05D006147 ORTHO05D007501 2.0e-137 493.0 302 82.1
Gohir.A03G199400 Gossypium hirsutum HOM05D006147 ORTHO05D007501 2.0e-137 493.0 376 68.9
Eucgr.G01732 Eucalyptus grandis HOM05D006147 ORTHO05D007501 2.7e-137 492.7 382 67.3
Sopen09g034870 Solanum pennellii HOM05D006147 ORTHO05D007501 3.5e-137 492.3 381 65.4
Thecc.02G074800 Theobroma cacao HOM05D006147 ORTHO05D007501 2.3e-136 489.6 382 67.0
CAN.G1635.6 Capsicum annuum HOM05D006147 ORTHO05D007501 6.6e-136 488.0 379 66.2
SalBow3G3875 Salvia bowleyana HOM05D006147 ORTHO05D007501 8.6e-136 487.6 383 66.1
Haze_02237 Corylus avellana HOM05D006147 ORTHO05D007501 1.5e-135 486.9 429 63.2
EL10Ac9g21633 Beta vulgaris HOM05D006147 ORTHO05D007501 2.5e-135 486.1 386 64.5
FAN15G0109 Fragaria x ananassa HOM05D006147 ORTHO05D007501 2.5e-135 486.1 386 65.0
VMungo1127G0575 Vigna mungo HOM05D006147 ORTHO05D007501 2.5e-135 486.1 383 65.0
PSO210G6769 Papaver somniferum HOM05D006147 ORTHO05D007501 7.2e-135 484.6 393 64.9
Aqoxy6G02357 Aquilegia oxysepala HOM05D006147 ORTHO05D007501 9.5e-135 484.2 309 76.7
Manes.04G083100 Manihot esculenta HOM05D006147 ORTHO05D007501 1.6e-134 483.4 303 78.5
Sed0012779 Sechium edule HOM05D006147 ORTHO05D007501 1.6e-134 483.4 383 66.8
Potri.009G124800 Populus trichocarpa HOM05D006147 ORTHO05D007501 3.6e-134 482.3 378 66.9
PGR042G0282 Punica granatum HOM05D006147 ORTHO05D007501 4.7e-134 481.9 390 65.6
Ciclev10028728m.g Citrus clementina HOM05D006147 ORTHO05D007501 1.0e-133 480.7 385 65.5
Atru.chr5.3146 Acer truncatum HOM05D006147 ORTHO05D007501 1.4e-133 480.3 384 66.4
Glyma.11G110000 Glycine max HOM05D006147 ORTHO05D007501 5.2e-133 478.4 385 64.2
Duzib248G0035 Durio zibethinus HOM05D006147 ORTHO05D007501 6.8e-133 478.0 420 61.9
Lj3g0027328 Lotus japonicus HOM05D006147 ORTHO05D007501 1.2e-132 477.2 383 64.2
Sabra09G0095800 Salix brachista HOM05D006147 ORTHO05D007501 3.4e-132 475.7 387 66.1
Peaxi162Scf00684g00123 Petunia axillaris HOM05D006147 ORTHO05D007501 4.4e-132 475.3 305 76.1
CANSAT11G2690 Cannabis sativa HOM05D006147 ORTHO05D007501 5.7e-132 474.9 383 64.5
AUR62016834 Chenopodium quinoa HOM05D006147 ORTHO05D007501 7.5e-132 474.6 386 63.5
CsaV3_7G000410 Cucumis sativus L. HOM05D006147 ORTHO05D007501 1.7e-131 473.4 383 65.3
Lalb_Chr03g0025341 Lupinus albus HOM05D006147 ORTHO05D007501 3.7e-131 472.2 383 64.0
Medtr4g072040 Medicago truncatula HOM05D006147 ORTHO05D007501 4.9e-131 471.9 384 64.1
TPR.G28159 Trifolium pratense HOM05D006147 ORTHO05D007501 6.3e-131 471.5 383 62.7
Oeu055635.1 Olea europaea HOM05D006147 ORTHO05D007501 1.1e-130 470.7 309 75.4
THA.LOC104804110 Tarenaya hassleriana HOM05D006147 ORTHO05D007501 1.8e-130 469.9 307 76.2
AL4G10420 Arabidopsis lyrata HOM05D006147 ORTHO05D007501 3.1e-130 469.2 380 65.0
AT2G21280 Arabidopsis thaliana HOM05D006147 ORTHO05D007501 9.2e-130 467.6 380 65.0
ECA233G5423 Erigeron canadensis HOM05D006147 ORTHO05D001140 4.5e-129 465.3 308 74.7
Ca_20936_v3 Cicer arietinum L. HOM05D006147 ORTHO05D007501 7.8e-129 464.5 386 64.0
Thhalv10000221m.g Eutrema salsugineum HOM05D006147 ORTHO05D007501 2.3e-128 463.0 304 75.0
Glyma.12G036900 Glycine max HOM05D006147 ORTHO05D007501 5.0e-128 461.8 304 74.3
arahy.Tifrunner.gnm1.ann1.S6V2XE Arachis hypogaea HOM05D006147 ORTHO05D007501 6.6e-128 461.5 379 63.3
Lj5C189G13 Lonicera japonica HOM05D006147 ORTHO05D007501 6.6e-128 461.5 353 67.1
Carub.0004s0032 Capsella rubella HOM05D006147 ORTHO05D007501 8.6e-128 461.1 381 63.8
A04p16060 Brassica napus HOM05D006147 ORTHO05D007501 1.9e-127 459.9 350 67.7
AUR62010384 Chenopodium quinoa HOM05D006147 ORTHO05D007501 1.9e-127 459.9 414 59.2
CARHR112150 Cardamine hirsuta HOM05D006147 ORTHO05D007501 3.3e-127 459.1 304 74.3
Aa31LG7G15210 Aethionema arabicum HOM05D006147 ORTHO05D007501 4.3e-127 458.8 304 74.3
arahy.Tifrunner.gnm1.ann1.JUX7JJ Arachis hypogaea HOM05D006147 ORTHO05D007501 5.6e-127 458.4 319 72.1
C04p50520 Brassica napus HOM05D006147 ORTHO05D007501 2.1e-126 456.4 306 73.2
Sp4g00470 Schrenkiella parvula HOM05D006147 ORTHO05D007501 2.8e-126 456.1 304 74.7
BcaC02g08802 Brassica carinata HOM05D006147 ORTHO05D007501 4.7e-126 455.3 306 72.5
BolC4t26650H Brassica oleracea HOM05D006147 ORTHO05D007501 4.7e-126 455.3 306 72.5
Psat7g138880 Pisum sativum HOM05D006147 ORTHO05D007501 4.7e-126 455.3 302 73.8
Hund00177 Selenicereus undatus HOM05D006147 ORTHO05D007501 6.1e-126 454.9 363 63.9
Phvul.011G038600 Phaseolus vulgaris HOM05D006147 ORTHO05D007501 1.8e-125 453.4 302 73.8
Hund00185 Selenicereus undatus HOM05D006147 ORTHO05D007501 3.0e-125 452.6 304 72.0
ATR0149G025 Amborella trichopoda HOM05D006147 ORTHO05D007501 4.0e-125 452.2 384 63.8
CDE02G0092 Ceratophyllum demersum HOM05D006147 ORTHO05D007501 9.8e-124 447.6 376 61.4
Gorai.005G248600 Gossypium raimondii HOM05D006147 ORTHO05D007501 6.4e-123 444.9 344 68.6
Sc18g0005390 Simmondsia chinensis HOM05D006147 ORTHO05D007501 6.6e-120 434.9 356 65.4
HPP92_002502 Vanilla planifolia HOM05D006147 ORTHO05D007501 1.5e-119 433.7 304 69.7
Lsat_1_v5_gn_8_127980 Lactuca sativa HOM05D006147 ORTHO05D007501 4.7e-118 428.7 391 61.1
Os02g0834700 Oryza sativa ssp. japonica HOM05D006147 ORTHO05D007501 9.8e-116 421.0 301 69.4
DCAR_003686 Daucus carota HOM05D006147 ORTHO05D007501 1.6e-113 413.7 280 72.1
ClCG02G004540 Citrullus lanatus HOM05D006147 ORTHO05D007501 2.1e-113 413.3 383 59.3
MELO3C002785.2 Cucumis melo HOM05D006147 ORTHO05D007501 1.1e-106 391.0 333 62.8
Mapoly0021s0030 Marchantia polymorpha HOM05D006147 ORTHO05D007501 1.6e-105 387.1 352 56.0
Nitab4.5_0001154g0060 Nicotiana tabacum HOM05D006147 ORTHO05D007501 6.0e-105 385.2 352 59.7
Pp3c7_11090 Physcomitrium patens HOM05D006147 ORTHO05D007501 1.3e-104 384.0 303 60.1
Pp3c7_11100 Physcomitrium patens HOM05D006147 ORTHO05D007501 1.3e-104 384.0 303 60.1
SMO146G0042 Selaginella moellendorffii HOM05D006147 ORTHO05D007501 2.8e-102 376.3 302 60.6
PSO170G3006 Papaver somniferum HOM05D006147 ORTHO05D007501 6.8e-101 371.7 392 54.6
Zm00001eb259680 Zea mays HOM05D006147 ORTHO05D007501 8.4e-99 364.8 286 64.0
Dinv41999 Davidia involucrata HOM05D006147 ORTHO05D007501 1.8e-93 347.1 281 65.1
Cc02_g16890 Coffea canephora HOM05D006147 ORTHO05D007501 6.9e-93 345.1 300 62.7
unitig_899.g15602 Utricularia gibba HOM05D006147 ORTHO05D007501 7.8e-89 331.6 283 60.1
Nitab4.5_0001370g0020 Nicotiana tabacum HOM05D006147 ORTHO05D007501 5.3e-85 318.9 184 83.2
Cre05.g233305 Chlamydomonas reinhardtii HOM05D006147 ORTHO05D007501 2.7e-81 306.6 303 49.5
MCO05G212 Micromonas commoda HOM05D006147 ORTHO05D007501 3.3e-79 299.7 309 49.8
SGA_v2.0_scaffold80G25875 Striga asiatica HOM05D006147 ORTHO05D007501 4.5e-76 289.3 389 46.3
Nn6g32256 Nelumbo nucifera HOM05D006147 ORTHO05D007501 3.8e-75 286.2 271 57.6
MCO16G248 Micromonas commoda HOM05D006147 ORTHO05D007501 1.1e-69 268.1 314 47.5
PRCOL_00000238 Prasinoderma coloniale HOM05D006147 ORTHO05D007501 2.4e-69 266.9 225 59.1
FvH4_2g10480 Fragaria vesca HOM05D006147 ORTHO05D007501 1.0e-67 261.5 226 61.1
AUR62040654 Chenopodium quinoa HOM05D006147 ORTHO05D007501 1.1e-66 258.1 307 49.8
Nn4g26316 Nelumbo nucifera HOM05D006147 ORTHO05D007501 1.0e-59 235.0 124 87.1
Nn6g32490 Nelumbo nucifera HOM05D006147 ORTHO05D007501 1.0e-59 235.0 124 87.1
arahy.Tifrunner.gnm1.ann1.B04QBU Arachis hypogaea HOM05D006147 ORTHO05D007501 5.0e-59 232.6 205 59.5
MELO3C028749.2 Cucumis melo HOM05D006147 ORTHO05D007501 2.2e-54 217.2 280 50.0
C09p25880 Brassica napus HOM05D006147 ORTHO05D007501 3.1e-53 213.4 122 78.7
BolC9t55495H Brassica oleracea HOM05D006147 ORTHO05D007501 9.1e-53 211.8 122 77.9
arahy.Tifrunner.gnm1.ann1.63XKYH Arachis hypogaea HOM05D006147 ORTHO05D007501 2.3e-40 170.6 118 72.0
arahy.Tifrunner.gnm1.ann1.KZ1FWN Arachis hypogaea HOM05D006147 ORTHO05D007501 3.9e-40 169.9 163 59.5
SEGI_33639 Sequoiadendron giganteum HOM05D006147 ORTHO05D007501 2.8e-38 163.7 103 69.9
BolC2t08257H Brassica oleracea HOM05D006147 ORTHO05D007501 2.1e-33 147.5 138 58.7
BraA07t28491Z Brassica rapa HOM05D006147 ORTHO05D007501 1.8e-32 144.4 102 70.6
Cc02_g16880 Coffea canephora HOM05D006147 ORTHO05D007501 2.3e-32 144.1 79 86.1
Pp3s34_200 Physcomitrium patens HOM05D006147 ORTHO05D007501 3.4e-31 140.2 304 31.2
BcaC03g14677 Brassica carinata HOM05D006147 ORTHO05D007501 1.2e-28 131.7 117 61.5
A07p07030 Brassica napus HOM05D006147 ORTHO05D007501 7.2e-26 122.5 102 63.7
CDE04G1860 Ceratophyllum demersum HOM05D006147 ORTHO05D007501 1.6e-25 121.3 301 30.9
C02p21170 Brassica napus HOM05D006147 ORTHO05D007501 9.8e-23 112.1 114 54.4
C02p21180 Brassica napus HOM05D006147 ORTHO05D007501 1.3e-22 111.7 71 69.0
BcaB08g34979 Brassica carinata HOM05D006147 ORTHO05D007501 2.8e-22 110.5 144 45.1
arahy.Tifrunner.gnm1.ann1.UB8UIZ Arachis hypogaea HOM05D006147 ORTHO05D007501 5.0e-19 99.8 181 38.7
arahy.Tifrunner.gnm1.ann1.PBTS15 Arachis hypogaea HOM05D006147 ORTHO05D007501 8.9e-16 89.0 45 86.7
SEGI_01868 Sequoiadendron giganteum HOM05D006147 ORTHO05D007501 4.1e-13 80.1 65 61.5
MBI05_g17912_MAGBIO Magnolia biondii HOM05D006147 ORTHO05D007501 2.7e-12 77.4 45 80.0
CSS0010383 Camellia sinensis var. sinensis HOM05D056514 ORTHO05D007501 2.5e-10 70.9 49 69.4
CSS0017259 Camellia sinensis var. sinensis HOM05D056514 ORTHO05D007501 1.6e-09 68.2 49 65.3
MELO3C013418.2 Cucumis melo HOM05D006147 ORTHO05D007501 1.8e-08 64.7 58 58.6
arahy.Tifrunner.gnm1.ann1.U5A9T5 Arachis hypogaea HOM05D000321 ORTHO05D000204 1.2e-07 62.0 181 30.4
Duzib132G0670 Durio zibethinus HOM05D006147 ORTHO05D007501 1.3e-06 58.5 59 52.5


User provided reference genes

Program Settings