Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim05G0064300 Rhododendron simsii HOM05D005996 ORTHO05D007507 0.0e+00 1907.5 1187 100.0
vmacro17393 Vaccinium macrocarpon HOM05D005996 ORTHO05D007507 0.0e+00 1401.0 1221 79.2
Dinv04976 Davidia involucrata HOM05D005996 ORTHO05D007507 6.6e-272 941.4 1193 63.1
Actinidia32089 Actinidia chinensis HOM05D005996 ORTHO05D007507 4.3e-255 885.6 1195 61.2
Dinv41983 Davidia involucrata HOM05D005996 ORTHO05D007507 9.4e-218 761.5 1107 59.8
CiPaw.06G125900 Carya illinoinensis HOM05D005996 ORTHO05D007507 6.5e-211 738.8 1222 53.6
Cc02_g16690 Coffea canephora HOM05D005996 ORTHO05D007507 5.5e-210 735.7 1192 56.4
GSVIVG01024119001 Vitis vinifera HOM05D005996 ORTHO05D007507 3.5e-204 716.5 1126 56.1
Manes.11G088413 Manihot esculenta HOM05D005996 ORTHO05D007507 1.0e-200 704.9 1190 53.7
Manes.11G088257 Manihot esculenta HOM05D005996 ORTHO05D007507 1.3e-198 698.0 1197 53.4
QL11p046997 Quercus lobata HOM05D005996 ORTHO05D007507 2.0e-191 674.1 1192 52.7
Oeu046116.1 Olea europaea HOM05D005996 ORTHO05D007507 5.4e-189 666.0 1172 54.2
Sabra04G0111800 Salix brachista HOM05D005996 ORTHO05D007507 3.5e-188 663.3 1230 46.2
TWI75G0427 Tripterygium wilfordii HOM05D005996 ORTHO05D007507 1.2e-183 648.3 1189 51.1
Haze_02211 Corylus avellana HOM05D005996 ORTHO05D007507 6.4e-182 642.5 1243 49.6
Cfa005165 Carpinus fangiana HOM05D005996 ORTHO05D007507 7.3e-178 629.0 1192 50.3
Thecc.02G069400 Theobroma cacao HOM05D005996 ORTHO05D007507 6.2e-177 625.9 1162 51.7
DCAR_022928 Daucus carota HOM05D005996 ORTHO05D007507 1.4e-173 614.8 1211 50.9
Potri.004G166600 Populus trichocarpa HOM05D005996 ORTHO05D007507 4.6e-172 609.8 1196 50.8
Sed0023130 Sechium edule HOM05D005996 ORTHO05D007507 1.1e-170 605.1 1108 52.6
Duzib052G0584 Durio zibethinus HOM05D005996 ORTHO05D007507 4.7e-169 599.7 1173 50.9
CsaV3_2G015630 Cucumis sativus L. HOM05D005996 ORTHO05D007507 3.2e-165 587.0 1195 49.1
MD05G1113900 Malus domestica HOM05D005996 ORTHO05D007507 2.7e-164 583.9 1190 50.8
Cpa.g.sc37.207 Carica papaya HOM05D005996 ORTHO05D007507 3.9e-163 580.1 1195 45.2
Nitab4.5_0000283g0180 Nicotiana tabacum HOM05D005996 ORTHO05D007507 4.0e-160 570.1 1202 49.6
ClCG11G003680 Citrullus lanatus HOM05D005996 ORTHO05D007507 5.3e-160 569.7 1189 49.6
Glyma.12G033700 Glycine max HOM05D005996 ORTHO05D007507 1.3e-158 565.1 1205 48.1
Eucgr.I01366 Eucalyptus grandis HOM05D005996 ORTHO05D007507 2.2e-158 564.3 1188 45.3
RcHm_v2.0_Chr6g0245931 Rosa chinensis HOM05D005996 ORTHO05D007507 4.2e-157 560.1 1194 49.2
FvH4_2g02240 Fragaria vesca HOM05D005996 ORTHO05D007507 5.4e-157 559.7 1190 49.2
Glyma.09G218800 Glycine max HOM05D005996 ORTHO05D007507 1.6e-156 558.1 1192 47.7
MSTRG.16865 Avicennia marina HOM05D005996 ORTHO05D007507 1.3e-155 555.1 1189 49.9
SGA_v2.0_scaffold58G20447 Striga asiatica HOM05D005996 ORTHO05D007507 3.9e-155 553.5 1220 49.3
Nn5g29328 Nelumbo nucifera HOM05D005996 ORTHO05D007507 4.8e-153 546.6 1207 48.8
FAN24G2882 Fragaria x ananassa HOM05D005996 ORTHO05D007507 1.7e-150 538.1 1190 48.5
VMungo1127G0707 Vigna mungo HOM05D005996 ORTHO05D007507 2.9e-150 537.3 1210 46.9
CANSAT25G2790 Cannabis sativa HOM05D005996 ORTHO05D007507 6.4e-150 536.2 1194 48.8
ECA234G3379 Erigeron canadensis HOM05D005996 ORTHO05D007507 1.9e-146 524.6 1189 48.5
Ca_19076_v3 Cicer arietinum L. HOM05D005996 ORTHO05D007507 2.5e-146 524.2 950 49.2
Lsat_1_v5_gn_4_74240 Lactuca sativa HOM05D005996 ORTHO05D007507 3.3e-146 523.9 1126 49.6
Atru.chr5.3202 Acer truncatum HOM05D005996 ORTHO05D007507 3.7e-145 520.4 1212 48.3
Gohir.D13G094700 Gossypium hirsutum HOM05D005996 ORTHO05D007507 3.7e-145 520.4 1170 48.9
Peaxi162Scf00362g01048 Petunia axillaris HOM05D005996 ORTHO05D007507 6.2e-145 519.6 1196 48.2
arahy.Tifrunner.gnm1.ann1.YQYF3H Arachis hypogaea HOM05D005996 ORTHO05D007507 2.4e-144 517.7 1239 44.9
Gorai.001G246900 Gossypium raimondii HOM05D005996 ORTHO05D007507 1.2e-143 515.4 1170 48.8
MELO3C020773.2 Cucumis melo HOM05D005996 ORTHO05D007507 4.5e-143 513.5 1195 47.7
arahy.Tifrunner.gnm1.ann1.XDQA6W Arachis hypogaea HOM05D005996 ORTHO05D007507 7.6e-143 512.7 1247 45.2
Gohir.A13G098800 Gossypium hirsutum HOM05D005996 ORTHO05D007507 7.6e-143 512.7 1171 48.8
Duzib248G0011 Durio zibethinus HOM05D005996 ORTHO05D007507 1.1e-141 508.8 1180 47.2
Sed0010933 Sechium edule HOM05D005996 ORTHO05D007507 7.1e-141 506.1 1201 47.3
Ah.01g018430 Amaranthus hybridus HOM05D005996 ORTHO05D007507 9.3e-141 505.8 799 53.4
Sc08g0001200 Simmondsia chinensis HOM05D005996 ORTHO05D007507 1.2e-140 505.4 1193 46.5
COL.COLO4_17237 Corchorus olitorius HOM05D005996 ORTHO05D007507 1.8e-139 501.5 1105 49.0
CSS0029020 Camellia sinensis var. sinensis HOM05D005996 ORTHO05D007507 2.3e-139 501.1 629 68.4
PGR142G2892 Punica granatum HOM05D005996 ORTHO05D007507 1.1e-136 492.3 1197 47.3
Sp7g32590 Schrenkiella parvula HOM05D005996 ORTHO05D007507 1.4e-136 491.9 1180 46.6
Migut.B00160 Erythranthe guttata HOM05D005996 ORTHO05D007507 1.8e-136 491.5 1183 46.7
Lj5C186G10 Lonicera japonica HOM05D005996 ORTHO05D007507 5.3e-136 490.0 1158 47.3
CAN.G588.14 Capsicum annuum HOM05D005996 ORTHO05D007507 6.9e-136 489.6 1233 45.7
Phvul.011G036300 Phaseolus vulgaris HOM05D005996 ORTHO05D007507 3.8e-134 483.8 1203 45.2
Medtr4g072990 Medicago truncatula HOM05D005996 ORTHO05D007507 1.9e-133 481.5 1182 46.4
Prupe.8G158300 Prunus persica HOM05D005996 ORTHO05D007507 7.9e-132 476.1 1210 45.9
AT4G34830 Arabidopsis thaliana HOM05D005996 ORTHO05D007507 1.3e-131 475.3 1197 45.6
PSO700G0013 Papaver somniferum HOM05D005996 ORTHO05D007507 1.3e-131 475.3 1228 44.6
Lj3g0021328 Lotus japonicus HOM05D005996 ORTHO05D007507 1.8e-131 474.9 1175 46.6
PSO170G2255 Papaver somniferum HOM05D005996 ORTHO05D007507 1.1e-130 472.2 1212 44.8
AL7G16380 Arabidopsis lyrata HOM05D005996 ORTHO05D007507 4.3e-130 470.3 1198 45.2
Aqoxy5G01766 Aquilegia oxysepala HOM05D005996 ORTHO05D007507 7.4e-130 469.5 1204 46.0
BcaNung00650 Brassica carinata HOM05D005996 ORTHO05D007507 3.7e-129 467.2 1179 46.0
Ciclev10027915m.g Citrus clementina HOM05D005996 ORTHO05D007507 1.2e-127 462.2 771 59.7
FAN15G0761 Fragaria x ananassa HOM05D005996 ORTHO05D007507 7.7e-127 459.5 1189 45.4
FAN20G0865 Fragaria x ananassa HOM05D005996 ORTHO05D007507 1.1e-125 455.7 1189 45.2
Hund06298 Selenicereus undatus HOM05D005996 ORTHO05D007507 1.4e-125 455.3 1211 39.4
TPR.G39263 Trifolium pratense HOM05D005996 ORTHO05D007507 2.5e-125 454.5 1201 45.2
FAN27G2880 Fragaria x ananassa HOM05D005996 ORTHO05D007507 3.6e-124 450.7 1190 46.3
EL10Ac9g22244 Beta vulgaris HOM05D005996 ORTHO05D007507 1.1e-120 439.1 1364 38.0
Solyc01g111020.3 Solanum lycopersicum HOM05D005996 ORTHO05D007507 2.0e-119 434.9 1254 43.6
THA.LOC104807280 Tarenaya hassleriana HOM05D005996 ORTHO05D007507 2.2e-118 431.4 1190 44.4
TAR628G0048 Trochodendron aralioides HOM05D005996 ORTHO05D007507 2.2e-118 431.4 785 52.2
Psat7g180560 Pisum sativum HOM05D005996 ORTHO05D007507 1.2e-116 425.6 1169 45.3
HanXRQChr10g0296321 Helianthus annuus HOM05D005996 ORTHO05D007507 2.1e-116 424.9 1194 45.7
Sopen01g053080 Solanum pennellii HOM05D005996 ORTHO05D007507 1.8e-115 421.8 1284 42.4
AUR62010338 Chenopodium quinoa HOM05D005996 ORTHO05D007507 5.1e-115 420.2 696 55.5
Thhalv10024275m.g Eutrema salsugineum HOM05D005996 ORTHO05D007507 2.2e-113 414.8 1183 44.4
Lalb_Chr01g0001941 Lupinus albus HOM05D005996 ORTHO05D007507 1.5e-111 408.7 903 52.0
Nitab4.5_0000980g0320 Nicotiana tabacum HOM05D005996 ORTHO05D007507 1.3e-110 405.6 1195 39.7
BolC1t00389H Brassica oleracea HOM05D005996 ORTHO05D007507 9.4e-109 399.4 1225 42.9
Aa31LG2G15710 Aethionema arabicum HOM05D005996 ORTHO05D007507 1.2e-108 399.1 1199 43.9
C01p03970 Brassica napus HOM05D005996 ORTHO05D007507 2.3e-107 394.8 1243 42.6
BraA01t00353Z Brassica rapa HOM05D005996 ORTHO05D007507 2.8e-105 387.9 1238 41.6
A01p03690 Brassica napus HOM05D005996 ORTHO05D007507 1.2e-103 382.5 1229 42.0
ATR0955G004 Amborella trichopoda HOM05D005996 ORTHO05D007507 5.9e-103 380.2 749 55.3
Os10g0181200 Oryza sativa ssp. japonica HOM05D005996 ORTHO05D007507 6.5e-102 376.7 765 46.8
Carub.0007s0547 Capsella rubella HOM05D005996 ORTHO05D007507 8.0e-100 369.8 884 49.9
MBI09_g26149_MAGBIO Magnolia biondii HOM05D005996 ORTHO05D007507 2.2e-97 361.7 1082 44.5
HPP92_022112 Vanilla planifolia HOM05D005996 ORTHO05D007507 2.4e-88 331.6 916 38.9
BcaNung04307 Brassica carinata HOM05D005996 ORTHO05D007507 3.7e-73 281.2 261 56.3
AUR62016883 Chenopodium quinoa HOM05D005996 ORTHO05D007507 5.0e-70 270.8 561 52.4
TAR628G0092 Trochodendron aralioides HOM05D005996 ORTHO05D007507 1.5e-66 259.2 232 59.1
CDE09G0530 Ceratophyllum demersum HOM05D005996 ORTHO05D007507 6.6e-62 243.8 400 65.5
Hma1.2p1_0032F.1_g019730 Hydrangea macrophylla HOM05D005996 ORTHO05D007507 4.4e-58 231.1 288 83.3
TWI75G0933 Tripterygium wilfordii HOM05D005996 ORTHO05D007507 3.0e-46 191.8 310 39.7
PGSC0003DMG400001599 Solanum tuberosum HOM05D005996 ORTHO05D007507 3.9e-46 191.4 784 41.3
CARHR243120 Cardamine hirsuta HOM05D005996 ORTHO05D007507 4.0e-43 181.4 719 43.3
Pp3c12_14320 Physcomitrium patens HOM05D005996 ORTHO05D007507 3.0e-38 165.2 249 41.4
Zm00001eb027100 Zea mays HOM05D005996 ORTHO05D007507 6.6e-38 164.1 339 59.0
AagrBONN_evm.TU.Sc2ySwM_228.2051 Anthoceros agrestis HOM05D005996 ORTHO05D007507 2.5e-37 162.2 282 38.7
Nitab4.5_0000980g0280 Nicotiana tabacum HOM05D005996 ORTHO05D007507 7.3e-37 160.6 122 64.8
SMO340G0075 Selaginella moellendorffii HOM05D005996 ORTHO05D007507 7.3e-37 160.6 240 40.4
Pp3c10_19570 Physcomitrium patens HOM05D005996 ORTHO05D007507 8.1e-36 157.1 244 40.6
CDE09G0218 Ceratophyllum demersum HOM05D005996 ORTHO05D007507 3.2e-32 145.2 134 58.2
Mapoly0039s0079 Marchantia polymorpha HOM05D005996 ORTHO05D007507 3.5e-31 141.7 238 37.8
Mapoly0039s0078 Marchantia polymorpha HOM05D005996 ORTHO05D007507 6.7e-30 137.5 239 38.9
CDE09G0259 Ceratophyllum demersum HOM05D005996 ORTHO05D007507 8.1e-28 130.6 177 42.4
ATR0913G001 Amborella trichopoda HOM05D005996 ORTHO05D007507 2.4e-27 129.0 333 62.8
ATR0074G001 Amborella trichopoda HOM05D005996 ORTHO05D007507 2.9e-25 122.1 112 56.2
CBR_g66762 Chara braunii HOM05D005996 ORTHO05D007507 4.9e-25 121.3 287 28.9
SEGI_22573 Sequoiadendron giganteum HOM05D005996 ORTHO05D007507 1.1e-24 120.2 139 48.2
MBI09_g44523_MAGBIO Magnolia biondii HOM05D005996 ORTHO05D007507 1.4e-24 119.8 127 54.3
CDE09G0717 Ceratophyllum demersum HOM05D005996 ORTHO05D007507 1.4e-19 103.2 100 76.0
Pp3c7_22430 Physcomitrium patens HOM05D005996 ORTHO05D007507 2.2e-17 95.9 199 30.2
SMO240G0032 Selaginella moellendorffii HOM05D005996 ORTHO05D007507 1.2e-15 90.1 127 40.2
Actinidia21406 Actinidia chinensis HOM05D005996 ORTHO05D007507 1.9e-13 82.8 169 39.1
MCO09G858 Micromonas commoda HOM05D005996 ORTHO05D007507 2.5e-13 82.4 246 30.1
QL11p047023 Quercus lobata HOM05D005996 ORTHO05D007507 1.7e-09 69.7 106 48.1
SMO106G0001 Selaginella moellendorffii HOM05D013590 ORTHO05D015741 2.2e-09 69.3 75 46.7
SMO301G0041 Selaginella moellendorffii HOM05D013590 ORTHO05D015741 3.2e-08 65.5 80 43.8
SMO286G0011 Selaginella moellendorffii HOM05D013590 ORTHO05D015741 4.2e-08 65.1 81 42.0
SMO245G0010 Selaginella moellendorffii HOM05D013590 ORTHO05D015741 5.5e-08 64.7 75 46.7
SMO116G0249 Selaginella moellendorffii HOM05D013590 ORTHO05D015741 4.6e-07 61.6 61 50.8
SMO245G0007 Selaginella moellendorffii HOM05D013590 ORTHO05D015741 7.9e-07 60.8 61 50.8
SMO274G0022 Selaginella moellendorffii HOM05D013590 ORTHO05D015741 7.9e-07 60.8 61 50.8
SMO347G0269 Selaginella moellendorffii HOM05D013590 ORTHO05D015741 7.9e-07 60.8 61 50.8
SMO360G0010 Selaginella moellendorffii HOM05D013590 ORTHO05D015741 7.9e-07 60.8 61 50.8
SMO060G0001 Selaginella moellendorffii HOM05D013590 ORTHO05D015741 3.0e-06 58.9 61 49.2
Ciclev10028828m.g Citrus clementina HOM05D005996 ORTHO05D007507 3.9e-06 58.5 380 28.7
MBI09_g46961_MAGBIO Magnolia biondii HOM05D005996 ORTHO05D007507 3.9e-06 58.5 39 69.2
SMO245G0001 Selaginella moellendorffii HOM05D013590 ORTHO05D015741 3.9e-06 58.5 61 49.2
SEGI_16644 Sequoiadendron giganteum HOM05D005996 ORTHO05D007507 3.9e-06 58.5 38 68.4
QL12p035384 Quercus lobata HOM05D004752 ORTHO05D005523 8.8e-06 57.4 152 25.7


User provided reference genes

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