Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim05G0058600 Rhododendron simsii HOM05D014298 ORTHO05D001342 0.0e+00 1544.6 735 100.0
Rhsim05G0059800 Rhododendron simsii HOM05D014298 ORTHO05D001342 0.0e+00 1402.5 707 95.0
Rhsim05G0058200 Rhododendron simsii HOM05D014298 ORTHO05D001342 0.0e+00 1168.3 885 66.0
Rhsim05G0058100 Rhododendron simsii HOM05D000237 ORTHO05D001145 3.6e-135 486.5 477 54.5
CSS0039569 Camellia sinensis var. sinensis HOM05D001521 ORTHO05D001342 2.1e-50 204.9 746 27.5
Sc19g0001570 Simmondsia chinensis HOM05D001521 ORTHO05D001342 1.5e-48 198.7 663 25.8
Rhsim05G0057400 Rhododendron simsii HOM05D014298 ORTHO05D001342 4.2e-43 180.6 309 37.5
Rhsim05G0058500 Rhododendron simsii HOM05D014298 ORTHO05D001342 4.4e-32 144.1 193 45.1
Rhsim05G0059300 Rhododendron simsii HOM05D014298 ORTHO05D001342 3.7e-31 141.0 193 42.5
Gohir.D02G009366 Gossypium hirsutum HOM05D001521 ORTHO05D001342 1.8e-25 122.1 449 28.7
Gohir.D02G009550 Gossypium hirsutum HOM05D001521 ORTHO05D001342 9.8e-24 116.3 443 27.5
Gorai.005G011400 Gossypium raimondii HOM05D001521 ORTHO05D001342 1.4e-22 112.5 448 27.5
Lju124C11T1 Lonicera japonica HOM05D001521 ORTHO05D001342 7.1e-22 110.2 333 29.4
Rhsim05G0059600 Rhododendron simsii HOM05D014298 ORTHO05D001342 1.3e-20 105.9 193 38.3
Lj9A162T18 Lonicera japonica HOM05D001521 ORTHO05D001342 2.5e-19 101.7 366 26.0
Gohir.D02G009600 Gossypium hirsutum HOM05D001521 ORTHO05D001342 1.2e-18 99.4 340 29.4
Gorai.005G011800 Gossypium raimondii HOM05D001521 ORTHO05D001342 1.2e-18 99.4 301 31.6
ClCG06G001040 Citrullus lanatus HOM05D001521 ORTHO05D001342 6.2e-18 97.1 664 24.1
Rhsim05G0057900 Rhododendron simsii HOM05D014298 ORTHO05D338638 3.1e-17 94.7 108 48.1
Gohir.A02G009180 Gossypium hirsutum HOM05D001521 ORTHO05D001342 4.0e-17 94.4 415 27.7
Gorai.005G011900 Gossypium raimondii HOM05D001521 ORTHO05D001342 2.0e-16 92.0 320 28.4
Rhsim05G0080900 Rhododendron simsii HOM05D014298 ORTHO05D339994 3.4e-16 91.3 180 35.0
RcHm_v2.0_Chr1g0336971 Rosa chinensis HOM05D001521 ORTHO05D001342 3.4e-16 91.3 191 34.0
GSVIVG01028618001 Vitis vinifera HOM05D001521 ORTHO05D001342 3.4e-16 91.3 455 23.7
TAR636G2451 Trochodendron aralioides HOM05D001521 ORTHO05D001342 8.3e-15 86.7 294 27.9
Hma1.2p1_0033F.1_g020970 Hydrangea macrophylla HOM05D001521 ORTHO05D001342 1.9e-14 85.5 167 32.9
Hma1.2p1_0033F.1_g020980 Hydrangea macrophylla HOM05D001521 ORTHO05D001342 3.2e-14 84.7 167 32.9
TAR371G0196 Trochodendron aralioides HOM05D001521 ORTHO05D001342 9.2e-14 83.2 304 26.3
Hma1.2p1_0225F.1_g094780 Hydrangea macrophylla HOM05D001521 ORTHO05D001342 3.5e-13 81.3 248 26.2
Dinv12865 Davidia involucrata HOM05D001521 ORTHO05D001342 4.6e-13 80.9 155 32.3
Hma1.2p1_0439F.1_g153130 Hydrangea macrophylla HOM05D001521 ORTHO05D001342 6.0e-13 80.5 175 34.3
TWI38G1624 Tripterygium wilfordii HOM05D001521 ORTHO05D001342 6.0e-13 80.5 210 28.1
Dinv37718 Davidia involucrata HOM05D001521 ORTHO05D001342 7.8e-13 80.1 122 36.9
TAR383G0835 Trochodendron aralioides HOM05D001521 ORTHO05D001342 1.0e-12 79.7 99 42.4
CSS0010403 Camellia sinensis var. sinensis HOM05D001521 ORTHO05D001342 1.7e-12 79.0 285 27.7
Hma1.2p1_0439F.1_g153190 Hydrangea macrophylla HOM05D001521 ORTHO05D001342 1.7e-12 79.0 113 40.7
MD07G1171100 Malus domestica HOM05D001521 ORTHO05D001342 2.3e-12 78.6 183 33.3
GSVIVG01028606001 Vitis vinifera HOM05D001521 ORTHO05D001342 2.3e-12 78.6 205 29.3
GSVIVG01028617001 Vitis vinifera HOM05D001521 ORTHO05D001342 2.3e-12 78.6 159 32.1
Cpa.g.sc264.7 Carica papaya HOM05D001521 ORTHO05D001342 3.9e-12 77.8 128 36.7
Hma1.2p1_3600F.1_g336970 Hydrangea macrophylla HOM05D001521 ORTHO05D001342 5.1e-12 77.4 175 33.7
Cpa.g.sc1831.1 Carica papaya HOM05D001521 ORTHO05D001342 1.5e-11 75.9 195 29.7
Prupe.2G097700 Prunus persica HOM05D001521 ORTHO05D001342 2.5e-11 75.1 159 30.2
Aqoxy7G03595 Aquilegia oxysepala HOM05D001521 ORTHO05D001342 3.3e-11 74.7 164 34.1
FvH4_7g07020 Fragaria vesca HOM05D001521 ORTHO05D001342 3.3e-11 74.7 163 32.5
FAN06G3326 Fragaria x ananassa HOM05D001521 ORTHO05D001342 3.3e-11 74.7 163 32.5
FAN10G4107 Fragaria x ananassa HOM05D001521 ORTHO05D001342 3.3e-11 74.7 163 32.5
Hma1.2p1_1715F.1_g299020 Hydrangea macrophylla HOM05D001521 ORTHO05D001342 4.3e-11 74.3 99 36.4
Prupe.2G087400 Prunus persica HOM05D001521 ORTHO05D001342 4.3e-11 74.3 118 36.4
Cpa.g.sc264.8 Carica papaya HOM05D001521 ORTHO05D001342 9.6e-11 73.2 188 29.3
MD02G1240200 Malus domestica HOM05D001521 ORTHO05D001342 9.6e-11 73.2 107 42.1
Rhsim05G0057500 Rhododendron simsii HOM05D014298 ORTHO05D340078 9.6e-11 73.2 119 41.2
RcHm_v2.0_Chr2g0163671 Rosa chinensis HOM05D001521 ORTHO05D001342 9.6e-11 73.2 245 28.6
Sed0027182 Sechium edule HOM05D001521 ORTHO05D001342 9.6e-11 73.2 155 34.2
ECA233G3555 Erigeron canadensis HOM05D001521 ORTHO05D001342 1.2e-10 72.8 126 36.5
ECA233G4386 Erigeron canadensis HOM05D001521 ORTHO05D001342 1.2e-10 72.8 126 36.5
MD03G1201400 Malus domestica HOM05D001521 ORTHO05D001342 1.2e-10 72.8 181 29.8
Dinv37728 Davidia involucrata HOM05D001521 ORTHO05D001342 1.6e-10 72.4 243 25.9
Gohir.A02G009400 Gossypium hirsutum HOM05D001521 ORTHO05D001342 2.1e-10 72.0 184 31.5
MD01G1104300 Malus domestica HOM05D001521 ORTHO05D001342 2.1e-10 72.0 189 31.2
Sed0024723 Sechium edule HOM05D001521 ORTHO05D001342 2.1e-10 72.0 100 37.0
Gohir.D02G009700 Gossypium hirsutum HOM05D001521 ORTHO05D001342 2.8e-10 71.6 154 32.5
Gorai.005G012000 Gossypium raimondii HOM05D001521 ORTHO05D001342 2.8e-10 71.6 154 32.5
Prupe.2G097500 Prunus persica HOM05D001521 ORTHO05D001342 2.8e-10 71.6 108 41.7
Sed0017923 Sechium edule HOM05D001521 ORTHO05D001342 4.7e-10 70.9 100 37.0
Lj1C599T0 Lonicera japonica HOM05D001521 ORTHO05D001342 6.2e-10 70.5 142 33.8
CANSAT21G0839 Cannabis sativa HOM05D001521 ORTHO05D001342 1.1e-09 69.7 104 37.5
ECA233G0417 Erigeron canadensis HOM05D001521 ORTHO05D001342 1.1e-09 69.7 126 35.7
Rhsim01G0106900 Rhododendron simsii HOM05D000041 ORTHO05D000452 1.1e-09 69.7 210 30.0
Rhsim05G0009700 Rhododendron simsii HOM05D001521 ORTHO05D001342 1.4e-09 69.3 107 35.5
Rhsim05G0011700 Rhododendron simsii HOM05D001521 ORTHO05D001342 1.4e-09 69.3 120 36.7
Dinv04994 Davidia involucrata HOM05D001521 ORTHO05D001342 1.8e-09 68.9 133 33.1
Lj1P1067T12 Lonicera japonica HOM05D001521 ORTHO05D001342 2.4e-09 68.6 247 28.7
MD02G1240000 Malus domestica HOM05D001521 ORTHO05D001342 2.4e-09 68.6 106 41.5
Rhsim05G0010100 Rhododendron simsii HOM05D001521 ORTHO05D001342 2.4e-09 68.6 103 40.8
ClCG03G004470 Citrullus lanatus HOM05D001521 ORTHO05D001342 3.1e-09 68.2 102 37.3
FAN08G1748 Fragaria x ananassa HOM05D001521 ORTHO05D001342 3.1e-09 68.2 245 26.9
FAN08G2683 Fragaria x ananassa HOM05D001521 ORTHO05D001342 3.1e-09 68.2 245 26.9
FAN08G3615 Fragaria x ananassa HOM05D001521 ORTHO05D001342 3.1e-09 68.2 245 26.9
Gohir.D02G019700 Gossypium hirsutum HOM05D001521 ORTHO05D001342 3.1e-09 68.2 249 29.3
Gorai.005G024800 Gossypium raimondii HOM05D001521 ORTHO05D001342 3.1e-09 68.2 249 29.3
PSO832G0723 Papaver somniferum HOM05D001521 ORTHO05D001342 4.0e-09 67.8 155 32.3
PSO832G1357 Papaver somniferum HOM05D001521 ORTHO05D001342 4.0e-09 67.8 155 32.3
PSO832G4060 Papaver somniferum HOM05D001521 ORTHO05D001342 4.0e-09 67.8 155 32.3
CANSAT11G0684 Cannabis sativa HOM05D001521 ORTHO05D001342 5.2e-09 67.4 286 26.2
CANSAT54G0874 Cannabis sativa HOM05D001521 ORTHO05D001342 5.2e-09 67.4 162 34.6
Cpa.g.c44888 Carica papaya HOM05D001521 ORTHO05D001342 5.2e-09 67.4 165 29.7
Cpa.g.sc291.2 Carica papaya HOM05D001521 ORTHO05D001342 5.2e-09 67.4 165 29.7
Duzib177G1034 Durio zibethinus HOM05D001521 ORTHO05D001342 5.2e-09 67.4 248 25.0
Rhsim01G0221700 Rhododendron simsii HOM05D001521 ORTHO05D001342 5.2e-09 67.4 162 31.5
Sed0026868 Sechium edule HOM05D001521 ORTHO05D001342 5.2e-09 67.4 238 27.7
MELO3C022430.2 Cucumis melo HOM05D001521 ORTHO05D001342 6.8e-09 67.0 102 38.2
RcHm_v2.0_Chr1g0337031 Rosa chinensis HOM05D001521 ORTHO05D001342 6.8e-09 67.0 112 37.5
FvH4_6g46030 Fragaria vesca HOM05D001521 ORTHO05D001342 8.9e-09 66.6 152 33.6
Oeu035081.1 Olea europaea HOM05D001521 ORTHO05D001342 8.9e-09 66.6 170 28.8
PSO421G0241 Papaver somniferum HOM05D001521 ORTHO05D001342 8.9e-09 66.6 154 28.6
ClCG06G001050 Citrullus lanatus HOM05D001521 ORTHO05D001342 1.2e-08 66.2 113 37.2
Duzib177G0128 Durio zibethinus HOM05D001521 ORTHO05D001342 1.2e-08 66.2 254 25.6
Duzib177G0777 Durio zibethinus HOM05D001521 ORTHO05D001342 1.2e-08 66.2 254 25.6
Aqoxy1G04261 Aquilegia oxysepala HOM05D001521 ORTHO05D001342 1.5e-08 65.9 162 30.2
FvH4_6g46040 Fragaria vesca HOM05D001521 ORTHO05D001342 1.5e-08 65.9 145 33.8
Duzib177G0352 Durio zibethinus HOM05D001521 ORTHO05D001342 2.6e-08 65.1 254 24.8
Lj1C599T6 Lonicera japonica HOM05D001521 ORTHO05D001342 2.6e-08 65.1 159 30.2
Rhsim05G0011600 Rhododendron simsii HOM05D001521 ORTHO05D001342 2.6e-08 65.1 107 40.2
RcHm_v2.0_Chr2g0163741 Rosa chinensis HOM05D001521 ORTHO05D001342 2.6e-08 65.1 152 31.6
SalBow8G0938 Salvia bowleyana HOM05D001521 ORTHO05D001342 2.6e-08 65.1 230 26.1
PSO063G1253 Papaver somniferum HOM05D001521 ORTHO05D001342 3.4e-08 64.7 120 33.3
PSO675G6111 Papaver somniferum HOM05D001521 ORTHO05D001342 4.4e-08 64.3 158 29.7
Prupe.2G097800 Prunus persica HOM05D001521 ORTHO05D001342 4.4e-08 64.3 104 37.5
Rhsim05G0009900 Rhododendron simsii HOM05D001521 ORTHO05D001342 4.4e-08 64.3 125 35.2
Sed0023613 Sechium edule HOM05D001521 ORTHO05D001342 4.4e-08 64.3 156 27.6
CANSAT25G3031 Cannabis sativa HOM05D001521 ORTHO05D001342 5.8e-08 63.9 166 30.1
Cpa.g.sc83.17 Carica papaya HOM05D001521 ORTHO05D001342 5.8e-08 63.9 288 23.3
Dinv05622 Davidia involucrata HOM05D001521 ORTHO05D001342 5.8e-08 63.9 133 32.3
Rhsim05G0010000 Rhododendron simsii HOM05D001521 ORTHO05D001342 5.8e-08 63.9 122 35.2
RcHm_v2.0_Chr2g0163591 Rosa chinensis HOM05D001521 ORTHO05D001342 5.8e-08 63.9 152 31.6
Sed0023711 Sechium edule HOM05D001521 ORTHO05D001342 5.8e-08 63.9 101 34.7
Cpa.g.sc125.2 Carica papaya HOM05D001521 ORTHO05D001342 7.6e-08 63.5 124 29.8
PSO135G0667 Papaver somniferum HOM05D001521 ORTHO05D001342 7.6e-08 63.5 228 25.9
PSO541G4178 Papaver somniferum HOM05D001521 ORTHO05D001342 7.6e-08 63.5 182 28.6
Hund15934 Selenicereus undatus HOM05D001521 ORTHO05D001342 7.6e-08 63.5 160 30.6
PSO541G3315 Papaver somniferum HOM05D001521 ORTHO05D001342 9.9e-08 63.2 177 27.7
Cpa.g.sc223.19 Carica papaya HOM05D001521 ORTHO05D001342 1.3e-07 62.8 104 35.6
CsaV3_6G006950 Cucumis sativus L. HOM05D001521 ORTHO05D001342 1.3e-07 62.8 108 37.0
Lj1C599T5 Lonicera japonica HOM05D001521 ORTHO05D001342 1.3e-07 62.8 159 29.6
EL10Ac9g21323 Beta vulgaris HOM05D001521 ORTHO05D001342 1.7e-07 62.4 274 23.4
CsaV3_6G006920 Cucumis sativus L. HOM05D001521 ORTHO05D001342 1.7e-07 62.4 162 29.0
CsaV3_6G008850 Cucumis sativus L. HOM05D001521 ORTHO05D001342 1.7e-07 62.4 72 38.9
HanXRQChr13g0405701 Helianthus annuus HOM05D001521 ORTHO05D001342 1.7e-07 62.4 201 28.4
Rhsim05G0011800 Rhododendron simsii HOM05D001521 ORTHO05D001342 1.7e-07 62.4 110 37.3
Rhsim08G0035600 Rhododendron simsii HOM05D001521 ORTHO05D001342 1.7e-07 62.4 100 38.0
SalBow3G2245 Salvia bowleyana HOM05D001521 ORTHO05D001342 1.7e-07 62.4 162 29.0
Cpa.g.sc567.1 Carica papaya HOM05D001521 ORTHO05D001342 2.2e-07 62.0 294 24.5
PSO541G0681 Papaver somniferum HOM05D001521 ORTHO05D001342 2.2e-07 62.0 157 29.3
Duzib177G0760 Durio zibethinus HOM05D001521 ORTHO05D001342 2.9e-07 61.6 254 24.4
HanXRQChr07g0187091 Helianthus annuus HOM05D001521 ORTHO05D001342 2.9e-07 61.6 102 35.3
PSO541G4184 Papaver somniferum HOM05D001521 ORTHO05D001342 2.9e-07 61.6 183 27.3
Sed0020102 Sechium edule HOM05D001521 ORTHO05D001342 2.9e-07 61.6 129 30.2
CANSAT80G0301 Cannabis sativa HOM05D001521 ORTHO05D001342 3.8e-07 61.2 182 33.0
MELO3C022255.2 Cucumis melo HOM05D001521 ORTHO05D001342 3.8e-07 61.2 99 34.3
EL10Ac9g22298 Beta vulgaris HOM05D001521 ORTHO05D001342 4.9e-07 60.8 231 25.5
PSO104G0202 Papaver somniferum HOM05D001521 ORTHO05D001342 4.9e-07 60.8 120 32.5
SalBow6G0237 Salvia bowleyana HOM05D001521 ORTHO05D001342 4.9e-07 60.8 212 28.8
MELO3C022434.2 Cucumis melo HOM05D001521 ORTHO05D001342 6.4e-07 60.5 102 36.3
PSO104G0194 Papaver somniferum HOM05D001521 ORTHO05D001342 6.4e-07 60.5 153 25.5
Duzib192G0699 Durio zibethinus HOM05D001521 ORTHO05D001342 8.4e-07 60.1 301 24.3
FAN13G1377 Fragaria x ananassa HOM05D001521 ORTHO05D001342 8.4e-07 60.1 217 28.6
Gohir.A02G009164 Gossypium hirsutum HOM05D001521 ORTHO05D001342 8.4e-07 60.1 121 36.4
SalBow1G5839 Salvia bowleyana HOM05D001521 ORTHO05D001342 8.4e-07 60.1 193 26.9
Sed0028148 Sechium edule HOM05D001521 ORTHO05D001342 8.4e-07 60.1 157 24.2
Ah.06g190240 Amaranthus hybridus HOM05D001521 ORTHO05D001342 1.1e-06 59.7 159 28.9
FAN09G4306 Fragaria x ananassa HOM05D001521 ORTHO05D001342 1.4e-06 59.3 125 32.0
Sed0017368 Sechium edule HOM05D001521 ORTHO05D001342 1.9e-06 58.9 274 25.9
Lj4P372T19 Lonicera japonica HOM05D001521 ORTHO05D001342 4.2e-06 57.8 125 32.0
Rhsim01G0107000 Rhododendron simsii HOM05D000041 ORTHO05D000061 4.2e-06 57.8 158 29.1
Rhsim08G0106700 Rhododendron simsii HOM05D000041 ORTHO05D000452 4.2e-06 57.8 158 29.1
FvH4_7g07080 Fragaria vesca HOM05D001521 ORTHO05D001342 5.4e-06 57.4 111 37.8
Lj4P373T17 Lonicera japonica HOM05D001521 ORTHO05D001342 5.4e-06 57.4 125 32.0
PSO409G0016 Papaver somniferum HOM05D001521 ORTHO05D001342 5.4e-06 57.4 99 31.3
Rhsim05G0011500 Rhododendron simsii HOM05D001521 ORTHO05D001342 5.4e-06 57.4 108 38.0
PSO541G4006 Papaver somniferum HOM05D001521 ORTHO05D001342 7.1e-06 57.0 160 28.1
Sed0017234 Sechium edule HOM05D001521 ORTHO05D001342 7.1e-06 57.0 100 30.0
Sed0027833 Sechium edule HOM05D001521 ORTHO05D001342 7.1e-06 57.0 114 29.8


User provided reference genes

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