Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim05G0047200 Rhododendron simsii HOM05D007709 ORTHO05D009577 1.3e-48 196.1 99 100.0
CAN.G1725.3 Capsicum annuum HOM05D007709 ORTHO05D009577 2.0e-17 92.4 78 56.4
Nitab4.5_0000783g0120 Nicotiana tabacum HOM05D007709 ORTHO05D009577 8.6e-16 87.0 78 48.7
Peaxi162Scf00362g00133 Petunia axillaris HOM05D007709 ORTHO05D009577 8.6e-16 87.0 85 47.1
Atru.chr5.3536 Acer truncatum HOM05D007709 ORTHO05D009577 2.5e-15 85.5 85 45.9
CSS0014347 Camellia sinensis var. sinensis HOM05D007709 ORTHO05D009577 3.3e-15 85.1 85 49.4
Migut.N01357 Erythranthe guttata HOM05D007709 ORTHO05D009577 3.3e-15 85.1 85 47.1
Ciclev10029706m.g Citrus clementina HOM05D007709 ORTHO05D009577 9.5e-15 83.6 78 51.3
Cpa.g.sc60.30 Carica papaya HOM05D007709 ORTHO05D009577 2.1e-14 82.4 85 45.9
Haze_02011 Corylus avellana HOM05D007709 ORTHO05D009577 4.7e-14 81.3 85 45.9
BcaC01g04855 Brassica carinata HOM05D007709 ORTHO05D009577 6.2e-14 80.9 75 50.7
C03p33100 Brassica napus HOM05D007709 ORTHO05D009577 6.2e-14 80.9 75 50.7
BolC3t15636H Brassica oleracea HOM05D007709 ORTHO05D009577 6.2e-14 80.9 75 50.7
Aqoxy6G01622 Aquilegia oxysepala HOM05D007709 ORTHO05D009577 1.4e-13 79.7 68 51.5
TWI31G1411 Tripterygium wilfordii HOM05D007709 ORTHO05D009577 1.4e-13 79.7 80 50.0
Sc14g0002460 Simmondsia chinensis HOM05D007709 ORTHO05D009577 2.3e-13 79.0 86 46.5
Ah.01g017550 Amaranthus hybridus HOM05D007709 ORTHO05D009577 3.1e-13 78.6 86 47.7
Thhalv10000588m.g Eutrema salsugineum HOM05D007709 ORTHO05D009577 3.1e-13 78.6 82 48.8
Cfa005362 Carpinus fangiana HOM05D007709 ORTHO05D009577 4.0e-13 78.2 85 47.1
Cc04_g09140 Coffea canephora HOM05D007709 ORTHO05D009577 4.0e-13 78.2 79 51.9
Carub.0004s0246 Capsella rubella HOM05D007709 ORTHO05D009577 5.2e-13 77.8 98 50.0
CiPaw.05G092600 Carya illinoinensis HOM05D007709 ORTHO05D009577 5.2e-13 77.8 85 47.1
Eucgr.I01530 Eucalyptus grandis HOM05D007709 ORTHO05D009577 6.8e-13 77.4 76 47.4
HanXRQChr16g0501351 Helianthus annuus HOM05D007709 ORTHO05D009577 8.9e-13 77.0 78 46.2
Nn5g30992 Nelumbo nucifera HOM05D007709 ORTHO05D009577 8.9e-13 77.0 78 47.4
BcaB01g02955 Brassica carinata HOM05D007709 ORTHO05D009577 1.2e-12 76.6 75 48.0
Sp4g00020 Schrenkiella parvula HOM05D007709 ORTHO05D009577 1.2e-12 76.6 82 50.0
A03p27450 Brassica napus HOM05D007709 ORTHO05D009577 2.0e-12 75.9 73 49.3
BraA03t11957Z Brassica rapa HOM05D007709 ORTHO05D009577 2.0e-12 75.9 73 49.3
COL.COLO4_34305 Corchorus olitorius HOM05D007709 ORTHO05D009577 2.0e-12 75.9 87 44.8
AL4G13130 Arabidopsis lyrata HOM05D007709 ORTHO05D009577 2.6e-12 75.5 83 44.6
AT2G23240 Arabidopsis thaliana HOM05D007709 ORTHO05D009577 4.4e-12 74.7 99 47.5
CSS0015820 Camellia sinensis var. sinensis HOM05D007709 ORTHO05D009577 4.4e-12 74.7 85 45.9
Thecc.02G145500 Theobroma cacao HOM05D007709 ORTHO05D009577 9.9e-12 73.6 76 44.7
Cfa005363 Carpinus fangiana HOM05D007709 ORTHO05D009577 1.3e-11 73.2 86 40.7
Sopen01g054290 Solanum pennellii HOM05D007709 ORTHO05D009577 1.3e-11 73.2 78 47.4
AT2G42000 Arabidopsis thaliana HOM05D007709 ORTHO05D009577 2.2e-11 72.4 102 49.0
PSO541G6469 Papaver somniferum HOM05D007709 ORTHO05D009577 2.2e-11 72.4 85 42.4
DCAR_026620 Daucus carota HOM05D007709 ORTHO05D009577 2.9e-11 72.0 80 41.2
Prupe.8G179200 Prunus persica HOM05D007709 ORTHO05D009577 8.3e-11 70.5 81 40.7
RcHm_v2.0_Chr6g0280851 Rosa chinensis HOM05D007709 ORTHO05D009577 8.3e-11 70.5 72 45.8
CANSAT25G2121 Cannabis sativa HOM05D007709 ORTHO05D009577 1.9e-10 69.3 82 39.0
DCAR_026621 Daucus carota HOM05D000628 ORTHO05D009577 2.4e-10 68.9 74 39.2
PGR142G3111 Punica granatum HOM05D007709 ORTHO05D009577 2.4e-10 68.9 68 48.5
QL03p016612 Quercus lobata HOM05D007709 ORTHO05D009577 5.4e-10 67.8 77 45.5
QL03p016617 Quercus lobata HOM05D007709 ORTHO05D009577 5.4e-10 67.8 77 45.5
QL11p056189 Quercus lobata HOM05D007709 ORTHO05D009577 5.4e-10 67.8 77 45.5
QL11p056219 Quercus lobata HOM05D007709 ORTHO05D009577 5.4e-10 67.8 77 45.5
AL4G40360 Arabidopsis lyrata HOM05D007709 ORTHO05D009577 7.1e-10 67.4 75 44.0
Manes.11G110300 Manihot esculenta HOM05D007709 ORTHO05D009577 7.1e-10 67.4 79 44.3
CSS0018079 Camellia sinensis var. sinensis HOM05D007709 ORTHO05D009577 9.2e-10 67.0 102 37.3
CSS0032875 Camellia sinensis var. sinensis HOM05D007709 ORTHO05D009577 9.2e-10 67.0 102 37.3
QL11p056180 Quercus lobata HOM05D007709 ORTHO05D009577 9.2e-10 67.0 77 45.5
Gorai.002G013700 Gossypium raimondii HOM05D007709 ORTHO05D009577 1.2e-09 66.6 68 42.6
THA.LOC104807798 Tarenaya hassleriana HOM05D007709 ORTHO05D009577 2.1e-09 65.9 84 42.9
Medtr8g012330 Medicago truncatula HOM05D001671 ORTHO05D001844 2.7e-09 65.5 80 38.8
Thecc.02G145600 Theobroma cacao HOM05D007709 ORTHO05D009577 4.6e-09 64.7 74 40.5
CARHR292840 Cardamine hirsuta HOM05D007709 ORTHO05D009577 6.0e-09 64.3 75 46.7
Carub.0004s2433 Capsella rubella HOM05D007709 ORTHO05D009577 7.8e-09 63.9 86 39.5
Gohir.A04G112024 Gossypium hirsutum HOM05D007709 ORTHO05D009577 1.3e-08 63.2 76 43.4
Gohir.D04G152500 Gossypium hirsutum HOM05D007709 ORTHO05D009577 1.3e-08 63.2 76 43.4
Gorai.012G139300 Gossypium raimondii HOM05D007709 ORTHO05D009577 1.3e-08 63.2 76 43.4
MD05G1135300 Malus domestica HOM05D007709 ORTHO05D009577 1.7e-08 62.8 82 39.0
Glyma.18G157800 Glycine max HOM05D007709 ORTHO05D009577 3.9e-08 61.6 88 40.9
Sed0006301 Sechium edule HOM05D007709 ORTHO05D009577 3.9e-08 61.6 78 39.7
MELO3C013494.2 Cucumis melo HOM05D007709 ORTHO05D009577 5.1e-08 61.2 74 41.9
Lalb_Chr07g0194411 Lupinus albus HOM05D007709 ORTHO05D009577 1.1e-07 60.1 92 30.4
arahy.Tifrunner.gnm1.ann1.0QS5M4 Arachis hypogaea HOM05D007709 ORTHO05D009577 1.5e-07 59.7 87 42.5
Os10g0542100 Oryza sativa ssp. japonica HOM05D007709 ORTHO05D009577 1.5e-07 59.7 66 43.9
QL03p016621 Quercus lobata HOM05D007709 ORTHO05D009577 1.5e-07 59.7 71 40.8
QL11p056199 Quercus lobata HOM05D007709 ORTHO05D009577 1.5e-07 59.7 71 40.8
arahy.Tifrunner.gnm1.ann1.9G47NZ Arachis hypogaea HOM05D007709 ORTHO05D009577 2.5e-07 58.9 87 40.2
SalBow5G1409 Salvia bowleyana HOM05D007709 ORTHO05D009577 5.6e-07 57.8 83 36.1
SalBow5G2601 Salvia bowleyana HOM05D007709 ORTHO05D009577 5.6e-07 57.8 83 36.1
Haze_22002 Corylus avellana HOM05D022555 ORTHO05D009577 7.3e-07 57.4 77 40.3
Lj3g0026575 Lotus japonicus HOM05D007709 ORTHO05D009577 9.5e-07 57.0 92 33.7
HPP92_022159 Vanilla planifolia HOM05D007709 ORTHO05D009577 2.1e-06 55.8 66 42.4
Gohir.D01G011700 Gossypium hirsutum HOM05D007709 ORTHO05D009577 6.2e-06 54.3 64 39.1
TPR.G29157 Trifolium pratense HOM05D007709 ORTHO05D009577 6.2e-06 54.3 97 39.2


User provided reference genes

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