Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim05G0043500 Rhododendron simsii HOM05D003644 ORTHO05D004305 4.5e-67 258.1 157 100.0
GSVIVG01015346001 Vitis vinifera HOM05D003644 ORTHO05D004305 1.6e-19 100.1 211 39.8
CSS0010496 Camellia sinensis var. sinensis HOM05D003644 ORTHO05D004305 8.6e-18 94.4 204 40.2
CSS0033414 Camellia sinensis var. sinensis HOM05D003644 ORTHO05D004305 8.6e-18 94.4 204 40.2
Thecc.09G105500 Theobroma cacao HOM05D003644 ORTHO05D004305 1.9e-17 93.2 213 38.5
Oeu015581.1 Olea europaea HOM05D003644 ORTHO05D004305 5.5e-17 91.7 207 38.6
TAR624G1421 Trochodendron aralioides HOM05D003644 ORTHO05D004305 1.0e-15 87.4 198 39.9
Potri.006G161100 Populus trichocarpa HOM05D003644 ORTHO05D004305 1.4e-15 87.0 201 38.8
Duzib168G0231 Durio zibethinus HOM05D003644 ORTHO05D004305 1.8e-15 86.7 216 36.6
Manes.16G112500 Manihot esculenta HOM05D003644 ORTHO05D004305 4.0e-15 85.5 205 37.1
Gorai.010G073900 Gossypium raimondii HOM05D003644 ORTHO05D004305 6.8e-15 84.7 195 38.5
TAR636G2793 Trochodendron aralioides HOM05D003644 ORTHO05D004305 6.8e-15 84.7 209 37.3
Duzib150G1566 Durio zibethinus HOM05D003644 ORTHO05D004305 2.0e-14 83.2 141 45.4
Duzib187G1156 Durio zibethinus HOM05D003644 ORTHO05D004305 3.4e-14 82.4 217 35.9
Gohir.D06G063400 Gossypium hirsutum HOM05D003644 ORTHO05D004305 3.4e-14 82.4 196 38.3
Manes.03G024200 Manihot esculenta HOM05D003644 ORTHO05D004305 3.4e-14 82.4 212 36.3
CiPaw.03G227900 Carya illinoinensis HOM05D003644 ORTHO05D004305 9.8e-14 80.9 201 36.8
Oeu002262.2 Olea europaea HOM05D003644 ORTHO05D004305 2.2e-13 79.7 155 43.9
Cpa.g.sc23.57 Carica papaya HOM05D003644 ORTHO05D004305 4.9e-13 78.6 118 46.6
VMungo0251G1747 Vigna mungo HOM05D003644 ORTHO05D004305 4.9e-13 78.6 211 35.1
Glyma.05G229100 Glycine max HOM05D003644 ORTHO05D004305 6.3e-13 78.2 215 36.3
Potri.018G084100 Populus trichocarpa HOM05D003644 ORTHO05D004305 6.3e-13 78.2 211 34.6
Peaxi162Scf00231g00061 Petunia axillaris HOM05D003644 ORTHO05D004305 8.3e-13 77.8 205 35.1
Glyma.09G193400 Glycine max HOM05D003644 ORTHO05D004305 1.1e-12 77.4 214 38.3
CSS0008241 Camellia sinensis var. sinensis HOM05D003644 ORTHO05D004305 1.8e-12 76.6 220 35.0
MBI04_g14930_MAGBIO Magnolia biondii HOM05D003644 ORTHO05D004305 1.8e-12 76.6 207 36.2
Peaxi162Scf00665g00003 Petunia axillaris HOM05D003644 ORTHO05D004305 1.8e-12 76.6 204 35.8
Hma1.2p1_0945F.1_g240090 Hydrangea macrophylla HOM05D003644 ORTHO05D004305 4.1e-12 75.5 177 36.7
arahy.Tifrunner.gnm1.ann1.TDG8V6 Arachis hypogaea HOM05D003644 ORTHO05D004305 5.4e-12 75.1 208 37.0
Nn3g18137 Nelumbo nucifera HOM05D003644 ORTHO05D004305 5.4e-12 75.1 213 34.3
Actinidia09436 Actinidia chinensis HOM05D003644 ORTHO05D004305 7.0e-12 74.7 212 34.4
HanXRQChr12g0358181 Helianthus annuus HOM05D003644 ORTHO05D004305 7.0e-12 74.7 156 39.7
Gohir.A06G064800 Gossypium hirsutum HOM05D003644 ORTHO05D004305 9.2e-12 74.3 117 46.2
Glyma.08G036100 Glycine max HOM05D003644 ORTHO05D004305 1.2e-11 73.9 210 35.2
Phvul.002G311400 Phaseolus vulgaris HOM05D003644 ORTHO05D004305 1.2e-11 73.9 214 35.0
Dinv41640 Davidia involucrata HOM05D003644 ORTHO05D004305 4.5e-11 72.0 60 71.7
PGR142G1369 Punica granatum HOM05D003644 ORTHO05D004305 4.5e-11 72.0 121 43.8
Ciclev10010512m.g Citrus clementina HOM05D003644 ORTHO05D004305 7.8e-11 71.2 222 34.2
Psat1g044920 Pisum sativum HOM05D003644 ORTHO05D004305 7.8e-11 71.2 109 46.8
PGSC0003DMG400003139 Solanum tuberosum HOM05D003644 ORTHO05D004305 7.8e-11 71.2 173 38.2
Haze_25785 Corylus avellana HOM05D003644 ORTHO05D004305 1.0e-10 70.9 213 34.7
Nn2g11654 Nelumbo nucifera HOM05D003644 ORTHO05D004305 1.0e-10 70.9 213 33.8
TPR.G34913 Trifolium pratense HOM05D003644 ORTHO05D004305 1.3e-10 70.5 214 35.5
ECA234G2378 Erigeron canadensis HOM05D003644 ORTHO05D004305 5.0e-10 68.6 117 42.7
Lj2g0017641 Lotus japonicus HOM05D003644 ORTHO05D004305 5.0e-10 68.6 206 34.0
RcHm_v2.0_Chr2g0091291 Rosa chinensis HOM05D003644 ORTHO05D004305 8.6e-10 67.8 129 43.4
Sed0019018 Sechium edule HOM05D003644 ORTHO05D004305 8.6e-10 67.8 219 33.3
QL02p044635 Quercus lobata HOM05D003644 ORTHO05D004305 1.1e-09 67.4 221 33.0
Sabra18G0072500 Salix brachista HOM05D003644 ORTHO05D004305 1.5e-09 67.0 228 33.3
Atru.chr7.1390 Acer truncatum HOM05D003644 ORTHO05D004305 1.9e-09 66.6 127 42.5
DCAR_012057 Daucus carota HOM05D003644 ORTHO05D004305 4.3e-09 65.5 148 40.5
Gohir.D07G007600 Gossypium hirsutum HOM05D003644 ORTHO05D004305 4.3e-09 65.5 203 36.0
arahy.Tifrunner.gnm1.ann1.X7P2RE Arachis hypogaea HOM05D003644 ORTHO05D004305 5.6e-09 65.1 158 37.3
COL.COLO4_34805 Corchorus olitorius HOM05D003644 ORTHO05D004305 5.6e-09 65.1 172 34.9
FvH4_1g05660 Fragaria vesca HOM05D003644 ORTHO05D004305 5.6e-09 65.1 222 31.5
FAN26G3023 Fragaria x ananassa HOM05D003644 ORTHO05D004305 5.6e-09 65.1 223 31.8
Sopen12g003210 Solanum pennellii HOM05D003644 ORTHO05D004305 5.6e-09 65.1 207 32.4
FAN19G0617 Fragaria x ananassa HOM05D003644 ORTHO05D004305 7.3e-09 64.7 222 31.5
Medtr6g088280 Medicago truncatula HOM05D003644 ORTHO05D004305 7.3e-09 64.7 126 42.1
HanXRQChr14g0449921 Helianthus annuus HOM05D003644 ORTHO05D004305 1.2e-08 63.9 161 38.5
MD02G1057600 Malus domestica HOM05D003644 ORTHO05D004305 1.2e-08 63.9 221 32.1
THA.LOC104814562 Tarenaya hassleriana HOM05D003644 ORTHO05D004305 1.2e-08 63.9 219 32.4
Actinidia20403 Actinidia chinensis HOM05D003644 ORTHO05D004305 1.6e-08 63.5 199 33.7
MSTRG.6013 Avicennia marina HOM05D003644 ORTHO05D004305 1.6e-08 63.5 212 32.1
Gorai.001G007300 Gossypium raimondii HOM05D003644 ORTHO05D004305 1.6e-08 63.5 209 35.4
VMungo0464G0020 Vigna mungo HOM05D003644 ORTHO05D004305 1.6e-08 63.5 203 34.0
FAN26G0903 Fragaria x ananassa HOM05D003644 ORTHO05D004305 2.1e-08 63.2 224 31.2
FAN28G1311 Fragaria x ananassa HOM05D003644 ORTHO05D004305 2.1e-08 63.2 233 30.9
A07p00580 Brassica napus HOM05D003644 ORTHO05D004305 2.8e-08 62.8 168 35.1
ClCG06G008860 Citrullus lanatus HOM05D003644 ORTHO05D004305 2.8e-08 62.8 219 32.0
PGSC0003DMG400000374 Solanum tuberosum HOM05D003644 ORTHO05D004305 2.8e-08 62.8 207 31.9
Gohir.A05G025200 Gossypium hirsutum HOM05D003644 ORTHO05D004305 4.7e-08 62.0 208 31.7
Phvul.004G168350 Phaseolus vulgaris HOM05D003644 ORTHO05D004305 4.7e-08 62.0 199 35.2
AL3G48010 Arabidopsis lyrata HOM05D003644 ORTHO05D004305 1.0e-07 60.8 203 32.0
CsaV3_1G021830 Cucumis sativus L. HOM05D003644 ORTHO05D004305 1.0e-07 60.8 127 40.9
Lalb_Chr16g0388081 Lupinus albus HOM05D003644 ORTHO05D004305 1.0e-07 60.8 137 39.4
Lsat_1_v5_gn_8_96040 Lactuca sativa HOM05D003644 ORTHO05D004305 1.4e-07 60.5 120 45.0
Thhalv10002311m.g Eutrema salsugineum HOM05D003644 ORTHO05D004305 1.8e-07 60.1 211 33.2
BcaB03g16807 Brassica carinata HOM05D003644 ORTHO05D004305 2.3e-07 59.7 169 36.7
Carub.0003s3436 Capsella rubella HOM05D003644 ORTHO05D004305 2.3e-07 59.7 128 39.8
BcaC06g32601 Brassica carinata HOM05D003644 ORTHO05D004305 3.0e-07 59.3 120 40.8
Sopen07g007520 Solanum pennellii HOM05D003644 ORTHO05D004305 3.0e-07 59.3 175 34.3
MELO3C024703.2 Cucumis melo HOM05D003644 ORTHO05D004305 5.2e-07 58.5 128 39.8
DCAR_010477 Daucus carota HOM05D003644 ORTHO05D004305 5.2e-07 58.5 168 33.9
Gohir.D05G026700 Gossypium hirsutum HOM05D003644 ORTHO05D004305 5.2e-07 58.5 211 30.8
Hund26238 Selenicereus undatus HOM05D003644 ORTHO05D004305 5.2e-07 58.5 57 66.7
Glyma.01G145600 Glycine max HOM05D003644 ORTHO05D004305 6.8e-07 58.2 208 32.7
BolC7t40541H Brassica oleracea HOM05D003644 ORTHO05D004305 2.0e-06 56.6 209 31.1
MD15G1192000 Malus domestica HOM05D003644 ORTHO05D004305 2.0e-06 56.6 122 41.0
ClCG11G002330 Citrullus lanatus HOM05D003644 ORTHO05D004305 2.6e-06 56.2 216 30.1
A09p59020 Brassica napus HOM05D003644 ORTHO05D004305 3.4e-06 55.8 214 30.8
BraA09t41288Z Brassica rapa HOM05D003644 ORTHO05D004305 3.4e-06 55.8 214 30.8
AUR62010940 Chenopodium quinoa HOM05D003644 ORTHO05D004305 3.4e-06 55.8 201 32.3
CsaV3_2G002110 Cucumis sativus L. HOM05D003644 ORTHO05D004305 3.4e-06 55.8 221 30.3
Prupe.7G225200 Prunus persica HOM05D003644 ORTHO05D004305 3.4e-06 55.8 72 51.4
Sed0013314 Sechium edule HOM05D003644 ORTHO05D004305 3.4e-06 55.8 116 38.8
FAN23G2152 Fragaria x ananassa HOM05D003644 ORTHO05D004305 4.4e-06 55.5 228 28.9
C07p56470 Brassica napus HOM05D003644 ORTHO05D004305 5.8e-06 55.1 120 40.0
TWI34G1832 Tripterygium wilfordii HOM05D003644 ORTHO05D004305 5.8e-06 55.1 217 31.8
Sc18g0001380 Simmondsia chinensis HOM05D003644 ORTHO05D004305 7.5e-06 54.7 64 54.7
Cc06_g10070 Coffea canephora HOM05D003644 ORTHO05D004305 9.8e-06 54.3 108 43.5
THA.LOC104804017 Tarenaya hassleriana HOM05D003644 ORTHO05D004305 9.8e-06 54.3 198 31.8


User provided reference genes

Program Settings