Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim05G0041300 Rhododendron simsii HOM05D004175 ORTHO05D004664 5.3e-156 554.7 359 100.0
Hund09241 Selenicereus undatus HOM05D004175 ORTHO05D004664 4.4e-86 322.4 303 68.6
VMungo0251G2778 Vigna mungo HOM05D004175 ORTHO05D004664 7.5e-86 321.6 296 70.3
QL02p042164 Quercus lobata HOM05D004175 ORTHO05D004664 1.0e-82 311.2 294 78.9
Medtr8g102770 Medicago truncatula HOM05D004175 ORTHO05D004664 6.2e-80 302.0 296 67.6
CSS0007429 Camellia sinensis var. sinensis HOM05D004175 ORTHO05D004664 2.6e-78 296.6 335 63.6
CSS0045871 Camellia sinensis var. sinensis HOM05D004175 ORTHO05D004664 2.6e-78 296.6 335 63.6
Prupe.7G222100 Prunus persica HOM05D004175 ORTHO05D004664 1.4e-76 290.8 314 63.7
Lalb_Chr05g0223141 Lupinus albus HOM05D004175 ORTHO05D004664 1.2e-75 287.7 337 60.2
FAN19G1571 Fragaria x ananassa HOM05D004175 ORTHO05D004664 8.6e-74 281.6 297 69.7
Cc06_g10300 Coffea canephora HOM05D004175 ORTHO05D004664 1.1e-73 281.2 295 66.8
CAN.G274.4 Capsicum annuum HOM05D004175 ORTHO05D004664 1.5e-73 280.8 297 66.3
Haze_25808 Corylus avellana HOM05D004175 ORTHO05D004664 4.3e-73 279.3 325 60.6
Atru.chr7.1440 Acer truncatum HOM05D004175 ORTHO05D004664 5.6e-73 278.9 325 60.3
Glyma.08G034700 Glycine max HOM05D004175 ORTHO05D004664 5.6e-73 278.9 296 65.2
Lj3g0019618 Lotus japonicus HOM05D004175 ORTHO05D004664 2.8e-72 276.6 296 63.5
Phvul.002G310000 Phaseolus vulgaris HOM05D004175 ORTHO05D004664 4.7e-72 275.8 304 62.8
MD02G1060900 Malus domestica HOM05D004175 ORTHO05D004664 1.1e-71 274.6 322 60.2
Sopen05g014800 Solanum pennellii HOM05D004175 ORTHO05D004664 1.4e-71 274.2 296 65.9
Aqoxy7G03896 Aquilegia oxysepala HOM05D004175 ORTHO05D004664 2.4e-71 273.5 297 64.0
Dinv36699 Davidia involucrata HOM05D004175 ORTHO05D004664 3.1e-71 273.1 321 60.4
Solyc05g018150.3 Solanum lycopersicum HOM05D004175 ORTHO05D004664 4.0e-71 272.7 296 65.9
BNapus_Darmor_BZH_scaffold_38p02220 Brassica napus HOM05D004175 ORTHO05D004664 6.8e-71 271.9 313 60.7
SHI11434 Sapria himalayana HOM05D004175 ORTHO05D004664 6.8e-71 271.9 336 57.7
Ciclev10008855m.g Citrus clementina HOM05D004175 ORTHO05D004664 1.2e-70 271.2 303 60.1
TAR383G0226 Trochodendron aralioides HOM05D004175 ORTHO05D004664 1.2e-70 271.2 313 60.7
CANSAT56G2035 Cannabis sativa HOM05D004175 ORTHO05D004664 4.4e-70 269.2 305 61.0
vmacro10860 Vaccinium macrocarpon HOM05D004175 ORTHO05D004664 5.8e-70 268.9 323 63.8
BcaB05g23410 Brassica carinata HOM05D004175 ORTHO05D004664 9.9e-70 268.1 313 60.7
DCAR_012049 Daucus carota HOM05D004175 ORTHO05D004664 9.9e-70 268.1 305 61.6
PSO210G6864 Papaver somniferum HOM05D004175 ORTHO05D004664 2.2e-69 266.9 297 63.3
Carub.0006s1803 Capsella rubella HOM05D004175 ORTHO05D004664 2.9e-69 266.5 313 60.1
Thhalv10014089m.g Eutrema salsugineum HOM05D004175 ORTHO05D004664 2.9e-69 266.5 313 59.1
AT5G19680 Arabidopsis thaliana HOM05D004175 ORTHO05D004664 4.9e-69 265.8 296 61.8
Glyma.05G227700 Glycine max HOM05D004175 ORTHO05D004664 1.9e-68 263.8 313 60.1
BolC9t58515H Brassica oleracea HOM05D004175 ORTHO05D004664 7.1e-68 261.9 326 57.7
arahy.Tifrunner.gnm1.ann1.2Q2DTK Arachis hypogaea HOM05D004175 ORTHO05D004664 9.2e-68 261.5 312 60.3
Ca_17354_v3 Cicer arietinum L. HOM05D004175 ORTHO05D004664 1.2e-67 261.2 309 58.9
Ca_29618_v3 Cicer arietinum L. HOM05D004175 ORTHO05D004664 1.2e-67 261.2 309 58.9
BraA10t44078Z Brassica rapa HOM05D004175 ORTHO05D004664 1.6e-67 260.8 326 57.7
Lsat_1_v5_gn_5_143861 Lactuca sativa HOM05D004175 ORTHO05D004664 1.6e-67 260.8 294 61.9
A10p20040 Brassica napus HOM05D004175 ORTHO05D004664 3.5e-67 259.6 326 57.7
MD15G1194400 Malus domestica HOM05D004175 ORTHO05D004664 4.6e-67 259.2 314 60.8
Peaxi162Scf00001g00131 Petunia axillaris HOM05D004175 ORTHO05D004664 4.6e-67 259.2 297 62.6
AL6G31190 Arabidopsis lyrata HOM05D004175 ORTHO05D004664 7.8e-67 258.5 296 60.8
CiPaw.03G226400 Carya illinoinensis HOM05D004175 ORTHO05D004664 1.0e-66 258.1 311 61.1
ECA247G2452 Erigeron canadensis HOM05D004175 ORTHO05D004664 1.7e-66 257.3 296 62.8
Cfa003199 Carpinus fangiana HOM05D004175 ORTHO05D004664 5.1e-66 255.8 325 57.8
AUR62010918 Chenopodium quinoa HOM05D004175 ORTHO05D004664 6.6e-66 255.4 302 61.6
BcaC04g19363 Brassica carinata HOM05D004175 ORTHO05D004664 4.3e-65 252.7 309 57.6
BcaC04g19365 Brassica carinata HOM05D004175 ORTHO05D004664 4.3e-65 252.7 326 56.7
C09p56500 Brassica napus HOM05D004175 ORTHO05D004664 4.3e-65 252.7 326 56.7
RcHm_v2.0_Chr2g0091541 Rosa chinensis HOM05D004175 ORTHO05D004664 1.6e-64 250.8 320 62.5
arahy.Tifrunner.gnm1.ann1.5M1SBB Arachis hypogaea HOM05D004175 ORTHO05D004664 2.1e-64 250.4 306 59.2
SGA_v2.0_scaffold10G05161 Striga asiatica HOM05D004175 ORTHO05D004664 4.8e-64 249.2 295 62.4
SGA_v2.0_scaffold62G21556 Striga asiatica HOM05D004175 ORTHO05D004664 6.2e-64 248.8 297 61.6
CARHR193230 Cardamine hirsuta HOM05D004175 ORTHO05D004664 1.1e-63 248.1 311 56.6
Hund26252 Selenicereus undatus HOM05D004175 ORTHO05D004664 1.1e-63 248.1 297 67.7
Sc08g0007900 Simmondsia chinensis HOM05D004175 ORTHO05D004664 1.4e-63 247.7 312 59.3
ClCG11G002240 Citrullus lanatus HOM05D004175 ORTHO05D004664 2.4e-63 246.9 326 45.7
TPR.G23501 Trifolium pratense HOM05D004175 ORTHO05D004664 5.3e-63 245.7 296 67.6
Oeu000358.1 Olea europaea HOM05D004175 ORTHO05D004664 6.9e-63 245.4 294 62.2
BcaC04g19364 Brassica carinata HOM05D004175 ORTHO05D004664 1.5e-62 244.2 241 55.6
Actinidia09442 Actinidia chinensis HOM05D001936 ORTHO05D002296 2.0e-62 243.8 297 62.0
TWI32G1108 Tripterygium wilfordii HOM05D004175 ORTHO05D004664 3.4e-62 243.0 297 60.3
Eucgr.C03782 Eucalyptus grandis HOM05D004175 ORTHO05D004664 5.8e-62 242.3 296 59.8
BcaC01g02078 Brassica carinata HOM05D004175 ORTHO05D004664 7.6e-62 241.9 226 57.1
Nn8g39121 Nelumbo nucifera HOM05D004175 ORTHO05D004664 7.6e-62 241.9 324 56.2
Duzib168G0201 Durio zibethinus HOM05D004175 ORTHO05D004664 9.9e-62 241.5 260 54.6
FAN28G2614 Fragaria x ananassa HOM05D004175 ORTHO05D004664 2.9e-61 240.0 320 58.1
EL10Ac8g18403 Beta vulgaris HOM05D004175 ORTHO05D004664 4.9e-61 239.2 295 68.5
HanXRQChr10g0318361 Helianthus annuus HOM05D004175 ORTHO05D004664 8.4e-61 238.4 308 56.8
Gohir.D06G065000 Gossypium hirsutum HOM05D004175 ORTHO05D004664 1.1e-60 238.0 297 58.6
PSO210G7624 Papaver somniferum HOM05D004175 ORTHO05D004664 1.4e-60 237.7 297 58.9
ATR0705G211 Amborella trichopoda HOM05D004175 ORTHO05D004664 1.9e-60 237.3 296 59.8
GSVIVG01015319001 Vitis vinifera HOM05D004175 ORTHO05D004664 1.9e-60 237.3 296 60.5
Gohir.A13G195800 Gossypium hirsutum HOM05D004175 ORTHO05D004664 3.2e-60 236.5 321 55.5
FAN26G0873 Fragaria x ananassa HOM05D004175 ORTHO05D004664 5.4e-60 235.7 297 60.6
FAN26G2762 Fragaria x ananassa HOM05D004175 ORTHO05D004664 5.4e-60 235.7 297 60.6
FAN23G2598 Fragaria x ananassa HOM05D004175 ORTHO05D004664 7.1e-60 235.3 297 60.6
FvH4_1g05880 Fragaria vesca HOM05D004175 ORTHO05D004664 2.7e-59 233.4 297 59.9
Sp6g24700 Schrenkiella parvula HOM05D004175 ORTHO05D004664 7.8e-59 231.9 313 56.2
Thecc.09G102700 Theobroma cacao HOM05D004175 ORTHO05D004664 7.8e-59 231.9 321 55.5
BcaC03g13699 Brassica carinata HOM05D004175 ORTHO05D004664 3.0e-58 229.9 313 55.3
CAN.G525.1 Capsicum annuum HOM05D004175 ORTHO05D004664 5.1e-58 229.2 297 58.9
Gorai.013G229800 Gossypium raimondii HOM05D004175 ORTHO05D004664 8.7e-58 228.4 322 54.0
A02p05730 Brassica napus HOM05D004175 ORTHO05D004664 1.1e-57 228.0 313 55.0
BraA02t05525Z Brassica rapa HOM05D004175 ORTHO05D004664 1.1e-57 228.0 313 55.0
Gohir.A06G066500 Gossypium hirsutum HOM05D004175 ORTHO05D004664 1.1e-57 228.0 297 57.2
CsaV3_2G001990 Cucumis sativus L. HOM05D004175 ORTHO05D004664 1.9e-57 227.3 296 56.4
Potri.018G086200 Populus trichocarpa HOM05D004175 ORTHO05D004664 1.9e-57 227.3 297 58.6
Gohir.D13G201000 Gossypium hirsutum HOM05D004175 ORTHO05D004664 2.5e-57 226.9 321 53.9
Nn2g11614 Nelumbo nucifera HOM05D004175 ORTHO05D004664 2.5e-57 226.9 330 53.9
Cpa.g.sc40.51 Carica papaya HOM05D004175 ORTHO05D004664 5.6e-57 225.7 321 53.6
Lalb_Chr09g0331471 Lupinus albus HOM05D004175 ORTHO05D004664 5.6e-57 225.7 296 62.8
Oeu017825.1 Olea europaea HOM05D004175 ORTHO05D004664 5.6e-57 225.7 315 56.8
THA.LOC104811087 Tarenaya hassleriana HOM05D004175 ORTHO05D004664 5.6e-57 225.7 326 53.4
Psat7g016360 Pisum sativum HOM05D004175 ORTHO05D004664 9.6e-57 224.9 296 56.1
RcHm_v2.0_Chr2g0091621 Rosa chinensis HOM05D004175 ORTHO05D004664 9.6e-57 224.9 320 56.6
Sabra18G0074500 Salix brachista HOM05D004175 ORTHO05D004664 9.6e-57 224.9 296 58.4
BolC2t08664H Brassica oleracea HOM05D004175 ORTHO05D004664 1.3e-56 224.6 225 54.7
unitig_26.g8970 Utricularia gibba HOM05D004175 ORTHO05D004664 1.6e-56 224.2 296 65.9
MELO3C004581.2 Cucumis melo HOM05D004175 ORTHO05D004664 2.8e-56 223.4 296 55.7
Sed0003540 Sechium edule HOM05D004175 ORTHO05D004664 1.8e-55 220.7 296 56.1
Manes.16G110500 Manihot esculenta HOM05D004175 ORTHO05D004664 3.1e-55 219.9 296 56.4
Duzib187G1630 Durio zibethinus HOM05D004175 ORTHO05D004664 9.0e-55 218.4 305 54.4
MBI04_g40471_MAGBIO Magnolia biondii HOM05D004175 ORTHO05D004664 1.2e-54 218.0 298 57.4
ECA234G4006 Erigeron canadensis HOM05D004175 ORTHO05D004664 2.0e-54 217.2 297 56.2
AagrBONN_evm.TU.Sc2ySwM_117.1201 Anthoceros agrestis HOM05D004175 ORTHO05D004664 2.6e-54 216.9 293 61.8
Migut.J01107 Erythranthe guttata HOM05D004175 ORTHO05D004664 9.9e-54 214.9 297 56.9
Potri.006G163900 Populus trichocarpa HOM05D004175 ORTHO05D004664 2.2e-53 213.8 296 56.4
Gorai.010G076100 Gossypium raimondii HOM05D004175 ORTHO05D004664 3.8e-53 213.0 297 54.9
Aa31LG1G8760 Aethionema arabicum HOM05D004175 ORTHO05D004664 8.4e-53 211.8 293 54.9
SEGI_33191 Sequoiadendron giganteum HOM05D004175 ORTHO05D004664 9.3e-52 208.4 294 59.5
Ah.14g083210 Amaranthus hybridus HOM05D004175 ORTHO05D004664 4.6e-51 206.1 294 55.8
Zm00001eb204970 Zea mays HOM05D004175 ORTHO05D004664 1.0e-50 204.9 292 54.8
MSTRG.6019 Avicennia marina HOM05D004175 ORTHO05D004664 1.8e-50 204.1 294 55.1
CDE02G1631 Ceratophyllum demersum HOM05D004175 ORTHO05D004664 3.0e-50 203.4 293 55.3
Pp3c1_38690 Physcomitrium patens HOM05D004175 ORTHO05D004664 1.3e-48 198.0 308 50.6
Pp3c2_9120 Physcomitrium patens HOM05D004175 ORTHO05D004664 1.6e-48 197.6 293 57.0
C05p31230 Brassica napus HOM05D004175 ORTHO05D004664 1.1e-47 194.9 186 53.8
C03p72980 Brassica napus HOM05D004175 ORTHO05D004664 5.3e-47 192.6 186 53.2
COL.COLO4_34774 Corchorus olitorius HOM05D004175 ORTHO05D004664 9.3e-44 181.8 173 57.2
Os02g0230100 Oryza sativa ssp. japonica HOM05D004175 ORTHO05D004664 1.2e-43 181.4 300 51.0
C02p31840 Brassica napus HOM05D004175 ORTHO05D004664 4.6e-43 179.5 227 46.3
C04p04320 Brassica napus HOM05D004175 ORTHO05D004664 1.0e-42 178.3 194 53.1
Mapoly0051s0012 Marchantia polymorpha HOM05D004175 ORTHO05D004664 1.8e-42 177.6 306 47.4
BcaC01g02978 Brassica carinata HOM05D004175 ORTHO05D004664 7.4e-41 172.2 229 47.2
C07p36980 Brassica napus HOM05D004175 ORTHO05D004664 7.4e-41 172.2 213 46.5
Nitab4.5_0000012g0030 Nicotiana tabacum HOM05D004175 ORTHO05D004664 2.8e-40 170.2 153 74.5
C09p49510 Brassica napus HOM05D004175 ORTHO05D004664 6.2e-40 169.1 184 51.1
BcaC03g15042 Brassica carinata HOM05D004175 ORTHO05D004664 1.1e-39 168.3 194 51.0
C01p01530 Brassica napus HOM05D004175 ORTHO05D004664 1.4e-39 167.9 160 55.6
Nitab4.5_0003199g0020 Nicotiana tabacum HOM05D004175 ORTHO05D004664 2.4e-39 167.2 153 75.8
MBI04_g06580_MAGBIO Magnolia biondii HOM05D004175 ORTHO05D004664 5.3e-39 166.0 120 72.5
Gorai.001G184800 Gossypium raimondii HOM05D004175 ORTHO05D004664 2.2e-37 160.6 166 55.4
C03p57560 Brassica napus HOM05D004175 ORTHO05D004664 2.9e-37 160.2 186 47.8
BolC3t19136H Brassica oleracea HOM05D004175 ORTHO05D004664 2.5e-36 157.1 161 54.7
BolC3t18031H Brassica oleracea HOM05D004175 ORTHO05D004664 6.1e-35 152.5 162 52.5
SMO337G0008 Selaginella moellendorffii HOM05D004175 ORTHO05D004664 3.0e-34 150.2 301 45.8
BolC7t44210H Brassica oleracea HOM05D004175 ORTHO05D004664 4.3e-33 146.4 105 66.7
BcaC06g33783 Brassica carinata HOM05D004175 ORTHO05D004664 9.7e-33 145.2 195 44.6
A07p01400 Brassica napus HOM05D004175 ORTHO05D004664 7.7e-30 135.6 167 49.1
Lj7A662T62 Lonicera japonica HOM05D004175 ORTHO05D004664 3.6e-27 126.7 253 51.0
CBR_g36965 Chara braunii HOM05D004175 ORTHO05D004664 4.3e-25 119.8 292 40.1
Gorai.009G408400 Gossypium raimondii HOM05D004175 ORTHO05D004664 5.7e-25 119.4 216 54.6
BraA03t14262Z Brassica rapa HOM05D004175 ORTHO05D004664 1.7e-24 117.9 161 46.6
FAN10G3778 Fragaria x ananassa HOM05D004175 ORTHO05D004664 2.4e-23 114.0 83 71.1
Gohir.D04G104800 Gossypium hirsutum HOM05D004175 ORTHO05D004664 6.9e-23 112.5 152 69.7
FAN10G1780 Fragaria x ananassa HOM05D004175 ORTHO05D004664 9.1e-23 112.1 83 69.9
FAN10G3383 Fragaria x ananassa HOM05D004175 ORTHO05D004664 9.1e-23 112.1 83 69.9
BolC4t22068H Brassica oleracea HOM05D004175 ORTHO05D004664 2.5e-20 104.0 81 63.0
FAN10G2625 Fragaria x ananassa HOM05D004175 ORTHO05D004664 5.5e-20 102.8 76 69.7
Glyma.08G276800 Glycine max HOM05D004175 ORTHO05D004664 1.5e-17 94.7 151 42.4
FAN28G1141 Fragaria x ananassa HOM05D004175 ORTHO05D004664 1.3e-16 91.7 82 61.0
MD03G1179500 Malus domestica HOM05D004175 ORTHO05D004664 8.2e-16 89.0 185 41.1
FAN18G1628 Fragaria x ananassa HOM05D005966 ORTHO05D007584 3.1e-15 87.0 94 54.3
FvH4_5g23601 Fragaria vesca HOM05D004175 ORTHO05D045656 2.0e-14 84.3 67 65.7
Cre05.g234655 Chlamydomonas reinhardtii HOM05D004175 ORTHO05D004664 1.3e-13 81.6 115 41.7
PRCOL_00004941 Prasinoderma coloniale HOM05D004175 ORTHO05D004664 1.8e-10 71.2 309 28.2
FAN20G2587 Fragaria x ananassa HOM05D000366 ORTHO05D000437 8.8e-10 68.9 61 57.4
FAN19G2726 Fragaria x ananassa HOM05D004175 ORTHO05D004664 1.5e-09 68.2 62 59.7
FvH4_3g18060 Fragaria vesca HOM05D004175 ORTHO05D004664 1.3e-08 65.1 78 47.4
HPP92_002875 Vanilla planifolia HOM05D004175 ORTHO05D004664 2.2e-08 64.3 83 45.8
C03p68800 Brassica napus HOM05D004175 ORTHO05D004664 4.8e-08 63.2 57 54.4
MBI04_g44954_MAGBIO Magnolia biondii HOM05D004175 ORTHO05D004664 4.8e-08 63.2 158 34.8
C05p31220 Brassica napus HOM05D000252 ORTHO05D004664 4.5e-06 56.6 29 89.7


User provided reference genes

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