Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim05G0040900 Rhododendron simsii HOM05D004485 ORTHO05D005485 0.0e+00 1132.5 626 100.0
Actinidia09445 Actinidia chinensis HOM05D004485 ORTHO05D005485 3.4e-235 818.5 712 69.5
Dinv36695 Davidia involucrata HOM05D004485 ORTHO05D005485 1.7e-234 816.2 712 68.4
CSS0002032 Camellia sinensis var. sinensis HOM05D004485 ORTHO05D005485 6.5e-234 814.3 700 69.6
Actinidia17528 Actinidia chinensis HOM05D004485 ORTHO05D005485 3.3e-230 802.0 712 68.4
vmacro10859 Vaccinium macrocarpon HOM05D004485 ORTHO05D005485 1.9e-225 786.2 631 75.4
CSS0009570 Camellia sinensis var. sinensis HOM05D004485 ORTHO05D005485 4.2e-225 785.0 700 67.9
GSVIVG01015314001 Vitis vinifera HOM05D004485 ORTHO05D005485 2.0e-211 739.6 714 63.9
CiPaw.03G226100 Carya illinoinensis HOM05D004485 ORTHO05D005485 5.9e-211 738.0 707 64.2
QL02p042072 Quercus lobata HOM05D004485 ORTHO05D005485 1.3e-205 720.3 706 62.6
CiPaw.04G158800 Carya illinoinensis HOM05D004485 ORTHO05D005485 7.7e-203 711.1 723 61.3
Duzib168G0844 Durio zibethinus HOM05D004485 ORTHO05D005485 5.5e-201 704.9 704 61.8
Nn8g39096 Nelumbo nucifera HOM05D004485 ORTHO05D005485 3.0e-199 699.1 714 60.6
TAR624G1325 Trochodendron aralioides HOM05D004485 ORTHO05D005485 5.2e-199 698.4 713 61.2
Thecc.09G101900 Theobroma cacao HOM05D004485 ORTHO05D005485 1.7e-197 693.3 708 61.3
CANSAT56G2449 Cannabis sativa HOM05D004485 ORTHO05D005485 1.2e-195 687.2 705 61.7
Atru.chr7.1446 Acer truncatum HOM05D004485 ORTHO05D005485 1.6e-195 686.8 712 60.3
CAN.G1642.10 Capsicum annuum HOM05D004485 ORTHO05D005485 1.0e-194 684.1 692 61.8
Ciclev10007632m.g Citrus clementina HOM05D004485 ORTHO05D005485 8.5e-194 681.0 714 60.4
MD15G1195100 Malus domestica HOM05D004485 ORTHO05D005485 7.2e-193 677.9 717 60.1
Potri.018G086600 Populus trichocarpa HOM05D004485 ORTHO05D005485 1.2e-192 677.2 685 60.9
Solyc12g008390.3 Solanum lycopersicum HOM05D004485 ORTHO05D005485 1.2e-192 677.2 726 59.0
TWI34G0799 Tripterygium wilfordii HOM05D004485 ORTHO05D005485 1.6e-192 676.8 711 59.8
Prupe.7G221400 Prunus persica HOM05D004485 ORTHO05D005485 2.7e-192 676.0 756 57.7
Sopen12g003350 Solanum pennellii HOM05D004485 ORTHO05D005485 8.0e-192 674.5 726 59.0
MD02G1064300 Malus domestica HOM05D004485 ORTHO05D005485 2.3e-191 672.9 714 59.9
Hma1.2p1_0571F.1_g180870 Hydrangea macrophylla HOM05D004485 ORTHO05D005485 3.0e-191 672.5 716 59.5
Nitab4.5_0000566g0170 Nicotiana tabacum HOM05D004485 ORTHO05D005485 8.8e-191 671.0 718 60.9
Nitab4.5_0013389g0010 Nicotiana tabacum HOM05D004485 ORTHO05D005485 8.8e-191 671.0 770 57.4
Gohir.D08G263700 Gossypium hirsutum HOM05D004485 ORTHO05D005485 1.2e-190 670.6 715 59.6
Duzib187G1416 Durio zibethinus HOM05D004485 ORTHO05D005485 7.5e-190 667.9 707 60.3
Gohir.D06G065100 Gossypium hirsutum HOM05D004485 ORTHO05D005485 7.5e-190 667.9 705 59.9
COL.COLO4_34764 Corchorus olitorius HOM05D004485 ORTHO05D005485 2.2e-189 666.4 681 61.4
Sabra18G0074900 Salix brachista HOM05D004485 ORTHO05D005485 8.3e-189 664.5 689 59.8
Glyma.01G008900 Glycine max HOM05D004485 ORTHO05D005485 1.6e-187 660.2 708 58.8
FAN19G2910 Fragaria x ananassa HOM05D004485 ORTHO05D005485 7.7e-187 657.9 727 58.3
Glyma.16G077500 Glycine max HOM05D004485 ORTHO05D005485 7.7e-187 657.9 706 58.6
Gohir.A06G066600 Gossypium hirsutum HOM05D004485 ORTHO05D005485 1.3e-186 657.1 703 59.3
ClCG11G002190 Citrullus lanatus HOM05D004485 ORTHO05D005485 1.6e-184 650.2 695 59.3
Gohir.A08G242800 Gossypium hirsutum HOM05D004485 ORTHO05D005485 3.6e-184 649.0 713 58.2
Manes.16G110100 Manihot esculenta HOM05D004485 ORTHO05D005485 4.7e-184 648.7 610 64.4
CsaV3_2G001970 Cucumis sativus L. HOM05D004485 ORTHO05D005485 8.8e-183 644.4 715 58.7
MBI07_g22518_MAGBIO Magnolia biondii HOM05D004485 ORTHO05D005485 1.5e-182 643.7 693 59.0
Oeu053166.1 Olea europaea HOM05D004485 ORTHO05D005485 1.3e-181 640.6 709 58.3
MELO3C004583.2 Cucumis melo HOM05D004485 ORTHO05D005485 1.8e-180 636.7 715 58.2
Sc08g0007920 Simmondsia chinensis HOM05D004485 ORTHO05D005485 1.8e-180 636.7 717 57.2
Eucgr.C01004 Eucalyptus grandis HOM05D004485 ORTHO05D005485 7.0e-180 634.8 711 56.8
Gorai.004G281700 Gossypium raimondii HOM05D004485 ORTHO05D005485 5.9e-179 631.7 616 63.6
Sed0011847 Sechium edule HOM05D004485 ORTHO05D005485 8.6e-178 627.9 736 55.8
PSO210G4150 Papaver somniferum HOM05D004485 ORTHO05D005485 9.5e-177 624.4 716 55.9
Migut.K00530 Erythranthe guttata HOM05D004485 ORTHO05D005485 1.5e-174 617.1 678 58.0
MSTRG.26380 Avicennia marina HOM05D004485 ORTHO05D005485 2.6e-174 616.3 716 56.0
Lalb_Chr14g0371821 Lupinus albus HOM05D004485 ORTHO05D005485 2.2e-173 613.2 714 56.3
Haze_25812 Corylus avellana HOM05D004485 ORTHO05D005485 8.3e-173 611.3 651 59.0
PSO210G3171 Papaver somniferum HOM05D004485 ORTHO05D005485 9.2e-172 607.8 716 55.7
EL10Ac8g18398 Beta vulgaris HOM05D004485 ORTHO05D005485 4.3e-169 599.0 713 55.1
MBI01_g35400_MAGBIO Magnolia biondii HOM05D004485 ORTHO05D005485 1.3e-165 587.4 770 52.3
VMungo0464G1472 Vigna mungo HOM05D004485 ORTHO05D005485 6.0e-163 578.6 701 54.5
Lalb_Chr24g0397331 Lupinus albus HOM05D004485 ORTHO05D005485 1.0e-162 577.8 708 54.9
Thhalv10001922m.g Eutrema salsugineum HOM05D004485 ORTHO05D005485 1.7e-162 577.0 711 55.0
Gorai.010G076200 Gossypium raimondii HOM05D004485 ORTHO05D005485 6.6e-162 575.1 736 52.9
Lj2g0014691 Lotus japonicus HOM05D004485 ORTHO05D005485 8.6e-162 574.7 715 53.8
PGR102G0995 Punica granatum HOM05D004485 ORTHO05D005485 1.1e-161 574.3 729 52.5
RcHm_v2.0_Chr2g0091661 Rosa chinensis HOM05D004485 ORTHO05D005485 1.1e-161 574.3 728 54.0
Phvul.004G170300 Phaseolus vulgaris HOM05D004485 ORTHO05D005485 1.5e-161 573.9 705 53.5
arahy.Tifrunner.gnm1.ann1.N3ID59 Arachis hypogaea HOM05D004485 ORTHO05D005485 3.3e-161 572.8 682 56.0
ECA236G0540 Erigeron canadensis HOM05D004485 ORTHO05D005485 3.3e-161 572.8 715 52.6
Psat1g046640 Pisum sativum HOM05D004485 ORTHO05D005485 2.8e-160 569.7 701 54.6
A09p12650 Brassica napus HOM05D004485 ORTHO05D005485 1.1e-159 567.8 719 53.3
BraA09t36912Z Brassica rapa HOM05D004485 ORTHO05D005485 6.8e-159 565.1 721 53.0
FvH4_1g05970 Fragaria vesca HOM05D004485 ORTHO05D005485 6.8e-159 565.1 727 53.0
FAN26G2333 Fragaria x ananassa HOM05D004485 ORTHO05D005485 8.9e-159 564.7 729 53.5
C09p15010 Brassica napus HOM05D004485 ORTHO05D005485 1.2e-158 564.3 746 51.5
BolC9t54403H Brassica oleracea HOM05D004485 ORTHO05D005485 1.2e-158 564.3 746 51.6
FAN26G0748 Fragaria x ananassa HOM05D004485 ORTHO05D005485 2.0e-158 563.5 729 53.4
AL3G48250 Arabidopsis lyrata HOM05D004485 ORTHO05D005485 2.6e-158 563.1 704 54.1
AUR62021427 Chenopodium quinoa HOM05D004485 ORTHO05D005485 2.2e-157 560.1 747 50.6
arahy.Tifrunner.gnm1.ann1.8771PM Arachis hypogaea HOM05D004485 ORTHO05D005485 2.9e-157 559.7 714 53.6
AT2G19950 Arabidopsis thaliana HOM05D004485 ORTHO05D005485 3.7e-157 559.3 700 53.6
FAN28G2435 Fragaria x ananassa HOM05D004485 ORTHO05D005485 1.4e-156 557.4 737 52.2
Lsat_1_v5_gn_8_96840 Lactuca sativa HOM05D004485 ORTHO05D005485 7.1e-156 555.1 756 51.1
BcaNung04089 Brassica carinata HOM05D004485 ORTHO05D005485 3.5e-155 552.7 734 51.4
arahy.Tifrunner.gnm1.ann1.TC5UZA Arachis hypogaea HOM05D004485 ORTHO05D005485 9.5e-153 544.7 670 53.0
Ca_25562_v3 Cicer arietinum L. HOM05D004485 ORTHO05D005485 7.6e-150 535.0 710 51.5
HPP92_005563 Vanilla planifolia HOM05D004485 ORTHO05D005485 1.7e-149 533.9 474 65.8
FAN23G2550 Fragaria x ananassa HOM05D004485 ORTHO05D005485 2.9e-149 533.1 739 51.2
Carub.0003s3420 Capsella rubella HOM05D004485 ORTHO05D005485 3.8e-149 532.7 704 51.7
CARHR110390 Cardamine hirsuta HOM05D004485 ORTHO05D005485 8.4e-149 531.6 693 52.2
TPR.G21387 Trifolium pratense HOM05D004485 ORTHO05D005485 4.1e-148 529.3 710 51.1
Peaxi162Scf00665g00331 Petunia axillaris HOM05D004485 ORTHO05D005485 1.6e-147 527.3 758 48.7
ATR0705G155 Amborella trichopoda HOM05D004485 ORTHO05D005485 2.1e-147 526.9 706 51.6
Aqoxy7G03881 Aquilegia oxysepala HOM05D004485 ORTHO05D005485 2.7e-147 526.6 723 50.1
arahy.Tifrunner.gnm1.ann1.96JC9B Arachis hypogaea HOM05D004485 ORTHO05D005485 6.0e-147 525.4 671 52.3
Os01g0744400 Oryza sativa ssp. japonica HOM05D004485 ORTHO05D005485 1.1e-145 521.2 716 50.7
Medtr6g088595 Medicago truncatula HOM05D004485 ORTHO05D005485 3.3e-145 519.6 716 51.5
unitig_899.g15433 Utricularia gibba HOM05D004485 ORTHO05D005485 4.3e-145 519.2 698 49.3
Zm00001eb153530 Zea mays HOM05D004485 ORTHO05D005485 6.9e-143 511.9 726 49.3
HanXRQChr12g0358161 Helianthus annuus HOM05D004485 ORTHO05D005485 5.8e-142 508.8 740 48.8
Zm00001eb371090 Zea mays HOM05D004485 ORTHO05D005485 8.4e-141 505.0 694 50.0
THA.LOC104820040 Tarenaya hassleriana HOM05D004485 ORTHO05D005485 1.2e-139 501.1 717 49.4
SGA_v2.0_scaffold129G34191 Striga asiatica HOM05D004485 ORTHO05D005485 3.8e-133 479.6 380 73.2
CDE04G3494 Ceratophyllum demersum HOM05D004485 ORTHO05D005485 7.1e-132 475.3 677 49.5
Aa31LG8G16840 Aethionema arabicum HOM05D004485 ORTHO05D005485 4.6e-131 472.6 715 47.7
SEGI_40884 Sequoiadendron giganteum HOM05D004485 ORTHO05D005485 7.9e-131 471.9 723 46.3
Sp3g33270 Schrenkiella parvula HOM05D004485 ORTHO05D005485 6.9e-127 458.8 719 47.4
Actinidia39786 Actinidia chinensis HOM05D004485 ORTHO05D005485 3.4e-118 429.9 420 63.8
BcaC04g22803 Brassica carinata HOM05D004485 ORTHO05D005485 2.1e-115 420.6 638 48.3
Cc06_g10330 Coffea canephora HOM05D004485 ORTHO05D005485 1.9e-113 414.1 521 52.6
Ah.14g083300 Amaranthus hybridus HOM05D004485 ORTHO05D005485 8.2e-112 408.7 430 59.8
AUR62010900 Chenopodium quinoa HOM05D004485 ORTHO05D005485 7.7e-102 375.6 666 43.2
Hund29368 Selenicereus undatus HOM05D004485 ORTHO05D005485 4.8e-96 356.3 496 52.2
Hund29369 Selenicereus undatus HOM05D004485 ORTHO05D005485 4.1e-95 353.2 496 52.0
AagrBONN_evm.TU.Sc2ySwM_368.430 Anthoceros agrestis HOM05D004485 ORTHO05D005485 1.7e-88 331.3 729 38.3
Actinidia39785 Actinidia chinensis HOM05D004485 ORTHO05D005485 5.3e-87 326.2 227 80.2
Oeu064194.1 Olea europaea HOM05D004485 ORTHO05D005485 2.7e-83 313.9 425 51.5
Cc06_g10340 Coffea canephora HOM05D004485 ORTHO05D005485 3.7e-80 303.5 187 86.6
Oeu064192.1 Olea europaea HOM05D004485 ORTHO05D005485 1.6e-78 298.1 271 67.2
Hund28808 Selenicereus undatus HOM05D004485 ORTHO05D005485 1.3e-72 278.5 210 74.3
Hund28810 Selenicereus undatus HOM05D004485 ORTHO05D005485 1.3e-72 278.5 210 74.3
DCAR_012046 Daucus carota HOM05D004485 ORTHO05D005485 2.8e-72 277.3 381 49.9
SMO356G0242 Selaginella moellendorffii HOM05D004485 ORTHO05D005485 9.5e-68 262.3 566 38.0
MBI07_g30871_MAGBIO Magnolia biondii HOM05D004485 ORTHO05D005485 1.2e-67 261.9 231 65.8
CDE02G0772 Ceratophyllum demersum HOM05D004485 ORTHO05D005485 5.2e-58 229.9 235 61.3
Cpa.g.sc40.65 Carica papaya HOM05D004485 ORTHO05D005485 2.6e-57 227.6 136 87.5
Potri.006G164350 Populus trichocarpa HOM05D004485 ORTHO05D005485 1.0e-53 215.7 172 71.5
CBR_g39203 Chara braunii HOM05D004485 ORTHO05D005485 1.6e-51 208.4 586 31.6
Cpa.g.sc40.63 Carica papaya HOM05D004485 ORTHO05D005485 7.5e-49 199.5 440 38.4
arahy.Tifrunner.gnm1.ann1.SL9UG3 Arachis hypogaea HOM05D004485 ORTHO05D005485 3.6e-43 180.6 232 53.0
Rhsim05G0040800 Rhododendron simsii HOM05D000602 ORTHO05D001147 7.8e-38 162.9 170 67.1
SMO140G0037 Selaginella moellendorffii HOM05D004485 ORTHO05D005485 2.3e-37 161.4 474 33.3
SHI02696 Sapria himalayana HOM05D004485 ORTHO05D005485 1.1e-36 159.1 393 38.4
Sc08g0007940 Simmondsia chinensis HOM05D004485 ORTHO05D005485 6.4e-32 143.3 150 61.3
SalBow3G4580 Salvia bowleyana HOM05D004485 ORTHO05D005485 1.4e-31 142.1 116 65.5
BcaC06g36663 Brassica carinata HOM05D004485 ORTHO05D005485 1.4e-26 125.6 210 43.8
A07p00710 Brassica napus HOM05D004485 ORTHO05D005485 7.3e-20 103.2 231 39.0
PGR102G1041 Punica granatum HOM05D004485 ORTHO05D005485 3.1e-18 97.8 209 39.7
Cpa.g.sc40.64 Carica papaya HOM05D004485 ORTHO05D005485 1.4e-15 89.0 86 62.8
HPP92_005577 Vanilla planifolia HOM05D004485 ORTHO05D005485 1.1e-10 72.8 72 55.6
ATR0693G380 Amborella trichopoda HOM05D004485 ORTHO05D005485 1.4e-10 72.4 70 61.4
HanXRQChr10g0316161 Helianthus annuus HOM05D004485 ORTHO05D005485 1.3e-08 65.9 50 76.0
PRCOL_00000913 Prasinoderma coloniale HOM05D004485 ORTHO05D005485 1.7e-08 65.5 465 26.7
C07p01440 Brassica napus HOM05D004485 ORTHO05D005485 2.2e-08 65.1 132 41.7
CDE02G3418 Ceratophyllum demersum HOM05D004485 ORTHO05D005485 2.2e-08 65.1 290 30.0
Gohir.D01G081701 Gossypium hirsutum HOM05D004485 ORTHO05D005485 8.4e-08 63.2 68 57.4
Gorai.003G091600 Gossypium raimondii HOM05D004485 ORTHO05D005485 8.4e-08 63.2 72 54.2
Gohir.D04G126400 Gossypium hirsutum HOM05D004485 ORTHO05D005485 1.4e-07 62.4 70 55.7
MD06G1230800 Malus domestica HOM05D004897 ORTHO05D005928 2.4e-07 61.6 338 25.4
Cre12.g517500 Chlamydomonas reinhardtii HOM05D004485 ORTHO05D005485 3.2e-07 61.2 458 24.2
Gohir.D05G357440 Gossypium hirsutum HOM05D004485 ORTHO05D005485 3.2e-07 61.2 70 55.7
Gohir.D05G357788 Gossypium hirsutum HOM05D004485 ORTHO05D005485 3.2e-07 61.2 70 55.7
Thhalv10007004m.g Eutrema salsugineum HOM05D004897 ORTHO05D005928 4.2e-07 60.8 337 25.2
A08p30510 Brassica napus HOM05D004897 ORTHO05D005928 1.6e-06 58.9 343 24.8
Gohir.D12G269100 Gossypium hirsutum HOM05D004897 ORTHO05D005928 2.7e-06 58.2 348 25.6
Gohir.A12G268700 Gossypium hirsutum HOM05D004897 ORTHO05D005928 3.5e-06 57.8 356 25.6
Gorai.008G289400 Gossypium raimondii HOM05D004897 ORTHO05D005928 3.5e-06 57.8 348 26.7
arahy.Tifrunner.gnm1.ann1.G8QSGL Arachis hypogaea HOM05D004485 ORTHO05D005485 4.6e-06 57.4 66 53.0
MBI12_g30398_MAGBIO Magnolia biondii HOM05D004897 ORTHO05D005928 6.0e-06 57.0 361 26.9


User provided reference genes

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