Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim05G0039400 Rhododendron simsii HOM05D008202 ORTHO05D010302 5.0e-48 194.1 99 100.0
vmacro10849 Vaccinium macrocarpon HOM05D008202 ORTHO05D010302 1.2e-28 129.8 136 57.4
Actinidia39781 Actinidia chinensis HOM05D008202 ORTHO05D010302 1.3e-27 126.3 97 67.0
Actinidia17520 Actinidia chinensis HOM05D008202 ORTHO05D010302 9.2e-26 120.2 99 63.6
CSS0001567 Camellia sinensis var. sinensis HOM05D008202 ORTHO05D010302 1.6e-25 119.4 100 62.0
Dinv42250 Davidia involucrata HOM05D008202 ORTHO05D010302 1.7e-24 115.9 99 63.6
Hma1.2p1_0386F.1_g141760 Hydrangea macrophylla HOM05D008202 ORTHO05D010302 5.2e-21 104.4 99 56.6
SGA_v2.0_scaffold512G52633 Striga asiatica HOM05D008202 ORTHO05D010302 1.2e-20 103.2 97 54.6
Dinv36682 Davidia involucrata HOM05D008202 ORTHO05D010302 6.4e-19 97.4 77 62.3
Manes.03G026600 Manihot esculenta HOM05D008202 ORTHO05D010302 2.4e-18 95.5 96 54.2
Oeu018577.1 Olea europaea HOM05D008202 ORTHO05D010302 2.7e-17 92.0 95 50.5
Cc06_g10540 Coffea canephora HOM05D008202 ORTHO05D010302 4.6e-17 91.3 99 51.5
Ciclev10010342m.g Citrus clementina HOM05D008202 ORTHO05D010302 1.0e-16 90.1 94 55.3
GSVIVG01015295001 Vitis vinifera HOM05D008202 ORTHO05D010302 6.6e-16 87.4 99 48.5
Migut.K00545 Erythranthe guttata HOM05D008202 ORTHO05D010302 8.6e-16 87.0 98 51.0
TWI63G1052 Tripterygium wilfordii HOM05D008202 ORTHO05D010302 8.6e-16 87.0 97 49.5
MSTRG.19550 Avicennia marina HOM05D008202 ORTHO05D010302 1.1e-15 86.7 97 46.4
Thecc.09G099700 Theobroma cacao HOM05D008202 ORTHO05D010302 2.5e-15 85.5 97 47.4
Ciclev10027258m.g Citrus clementina HOM05D008202 ORTHO05D010302 3.3e-15 85.1 57 66.7
HanXRQChr12g0358111 Helianthus annuus HOM05D008202 ORTHO05D010302 4.3e-15 84.7 101 51.5
Peaxi162Scf00720g00418 Petunia axillaris HOM05D008202 ORTHO05D010302 5.6e-15 84.3 52 73.1
Manes.04G125801 Manihot esculenta HOM05D008202 ORTHO05D010302 7.3e-15 84.0 50 72.0
Manes.13G078801 Manihot esculenta HOM05D008202 ORTHO05D010302 7.3e-15 84.0 50 72.0
Haze_25829 Corylus avellana HOM05D008202 ORTHO05D010302 1.6e-14 82.8 99 44.4
EL10Ac8g18376 Beta vulgaris HOM05D008202 ORTHO05D010302 2.8e-14 82.0 99 47.5
Sc18g0001520 Simmondsia chinensis HOM05D008202 ORTHO05D010302 2.8e-14 82.0 99 47.5
DCAR_028656 Daucus carota HOM05D008202 ORTHO05D010302 3.6e-14 81.6 97 48.5
Ah.14g082540 Amaranthus hybridus HOM05D008202 ORTHO05D010302 4.7e-14 81.3 45 75.6
Ah.14g083220 Amaranthus hybridus HOM05D008202 ORTHO05D010302 4.7e-14 81.3 45 75.6
Lsat_1_v5_gn_8_98261 Lactuca sativa HOM05D008202 ORTHO05D010302 1.1e-13 80.1 97 48.5
COL.COLO4_34733 Corchorus olitorius HOM05D008202 ORTHO05D010302 1.4e-13 79.7 54 63.0
CiPaw.04G157000 Carya illinoinensis HOM05D008202 ORTHO05D010302 1.8e-13 79.3 96 47.9
CiPaw.04G155900 Carya illinoinensis HOM05D008202 ORTHO05D010302 3.1e-13 78.6 96 47.9
AUR62010887 Chenopodium quinoa HOM05D008202 ORTHO05D010302 5.2e-13 77.8 99 46.5
Solyc04g058130.3 Solanum lycopersicum HOM05D008202 ORTHO05D010302 5.2e-13 77.8 53 67.9
AUR62021399 Chenopodium quinoa HOM05D008202 ORTHO05D010302 1.2e-12 76.6 103 44.7
MD02G1066600 Malus domestica HOM05D008202 ORTHO05D010302 4.4e-12 74.7 97 46.4
PGSC0003DMG400046448 Solanum tuberosum HOM05D001685 ORTHO05D006653 9.9e-12 73.6 98 45.9
Prupe.7G218700 Prunus persica HOM05D008202 ORTHO05D010302 1.3e-11 73.2 98 43.9
Gorai.010G077500 Gossypium raimondii HOM05D008202 ORTHO05D010302 2.2e-11 72.4 97 47.4
FAN23G0175 Fragaria x ananassa HOM05D008202 ORTHO05D010302 3.7e-11 71.6 68 51.5
FAN26G0167 Fragaria x ananassa HOM05D008202 ORTHO05D010302 4.9e-11 71.2 57 56.1
FAN26G3206 Fragaria x ananassa HOM05D008202 ORTHO05D010302 4.9e-11 71.2 57 56.1
CDE08G1102 Ceratophyllum demersum HOM05D008202 ORTHO05D010302 8.3e-11 70.5 91 49.5
FvH4_1g06280 Fragaria vesca HOM05D008202 ORTHO05D010302 8.3e-11 70.5 59 55.9
FAN19G1093 Fragaria x ananassa HOM05D008202 ORTHO05D010302 8.3e-11 70.5 59 55.9
Gohir.A06G067500 Gossypium hirsutum HOM05D008202 ORTHO05D010302 8.3e-11 70.5 95 45.3
Ciclev10027039m.g Citrus clementina HOM05D008202 ORTHO05D010302 3.2e-10 68.6 98 43.9
RcHm_v2.0_Chr2g0091981 Rosa chinensis HOM05D008202 ORTHO05D010302 3.2e-10 68.6 42 66.7
Lalb_Chr14g0371911 Lupinus albus HOM05D008202 ORTHO05D010302 1.2e-09 66.6 70 47.1
Nn8g39054 Nelumbo nucifera HOM05D008202 ORTHO05D010302 2.1e-09 65.9 98 42.9
Nitab4.5_0002557g0010 Nicotiana tabacum HOM05D001685 ORTHO05D006653 3.5e-09 65.1 45 66.7
Atru.chr7.1471 Acer truncatum HOM05D008202 ORTHO05D010302 4.6e-09 64.7 80 46.2
Gohir.D06G066100 Gossypium hirsutum HOM05D008202 ORTHO05D010302 6.0e-09 64.3 97 45.4
Eucgr.C03726 Eucalyptus grandis HOM05D008202 ORTHO05D010302 1.3e-08 63.2 83 38.6
HPP92_009087 Vanilla planifolia HOM05D008202 ORTHO05D010302 2.3e-08 62.4 54 50.0
Medtr6g088800 Medicago truncatula HOM05D008202 ORTHO05D010302 3.0e-08 62.0 97 38.1
unitig_52.g17095 Utricularia gibba HOM05D008202 ORTHO05D010302 3.9e-08 61.6 78 41.0
ClCG11G002070 Citrullus lanatus HOM05D008202 ORTHO05D010302 5.1e-08 61.2 75 45.3
CsaV3_2G001850 Cucumis sativus L. HOM05D008202 ORTHO05D010302 8.6e-08 60.5 81 40.7
ATR0705G156 Amborella trichopoda HOM05D008202 ORTHO05D010302 1.9e-07 59.3 85 38.8
Psat1g048280 Pisum sativum HOM05D008202 ORTHO05D010302 3.3e-07 58.5 97 34.0
MBI01_g10122_MAGBIO Magnolia biondii HOM05D003005 ORTHO05D004170 4.3e-07 58.2 37 64.9
unitig_52.g17250 Utricularia gibba HOM05D008202 ORTHO05D010302 5.6e-07 57.8 78 38.5
Os01g0742766 Oryza sativa ssp. japonica HOM05D008202 ORTHO05D010302 2.1e-06 55.8 88 38.6
Zm00001eb371180 Zea mays HOM05D008202 ORTHO05D010302 2.1e-06 55.8 74 41.9
PSO210G1322 Papaver somniferum HOM05D061259 ORTHO05D010302 3.6e-06 55.1 35 68.6
PSO210G2383 Papaver somniferum HOM05D061259 ORTHO05D010302 3.6e-06 55.1 35 68.6
MD15G1197100 Malus domestica HOM05D008202 ORTHO05D010302 6.2e-06 54.3 89 37.1


User provided reference genes

Program Settings