Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim05G0037800 Rhododendron simsii HOM05D010576 ORTHO05D012109 3.4e-231 804.7 417 100.0
Rhsim05G0035800 Rhododendron simsii HOM05D010576 ORTHO05D012109 2.2e-73 280.4 339 52.8
Rhsim05G0025500 Rhododendron simsii HOM05D010576 ORTHO05D012109 2.8e-60 236.9 305 49.5
Rhsim05G0037000 Rhododendron simsii HOM05D010576 ORTHO05D012109 1.6e-42 177.9 379 40.6
Rhsim05G0036100 Rhododendron simsii HOM05D007376 ORTHO05D001590 2.8e-39 167.2 179 57.5
Rhsim05G0036600 Rhododendron simsii HOM05D010576 ORTHO05D012109 5.4e-35 152.9 357 37.8
vmacro10804 Vaccinium macrocarpon HOM05D000126 ORTHO05D022121 1.3e-33 148.3 373 34.3
Rhsim05G0025200 Rhododendron simsii HOM05D010576 ORTHO05D012109 8.9e-30 135.6 393 32.8
Rhsim05G0038000 Rhododendron simsii HOM05D010576 ORTHO05D012109 3.2e-27 127.1 395 30.9
Rhsim05G0037300 Rhododendron simsii HOM05D000234 ORTHO05D012109 2.0e-26 124.4 230 41.7
Rhsim05G0025000 Rhododendron simsii HOM05D010576 ORTHO05D012109 6.0e-26 122.9 230 41.7
Rhsim05G0025400 Rhododendron simsii HOM05D011528 ORTHO05D030534 4.3e-24 116.7 96 65.6
Rhsim05G0034400 Rhododendron simsii HOM05D000577 ORTHO05D012109 3.2e-19 100.5 169 40.8
vmacro17215 Vaccinium macrocarpon HOM05D000126 ORTHO05D022121 5.4e-19 99.8 359 30.9
Rhsim05G0077100 Rhododendron simsii HOM05D010576 ORTHO05D012109 8.6e-17 92.4 343 30.9
RhsimUnG0076800 Rhododendron simsii HOM05D010576 ORTHO05D012109 1.4e-14 85.1 145 42.1
Rhsim05G0037400 Rhododendron simsii HOM05D010576 ORTHO05D012109 8.9e-14 82.4 172 37.8
Dinv26453 Davidia involucrata HOM05D000455 ORTHO05D000434 3.2e-11 73.9 88 43.2
Rhsim05G0033900 Rhododendron simsii HOM05D000577 ORTHO05D001093 3.2e-11 73.9 203 33.0
Rhsim05G0077200 Rhododendron simsii HOM05D010576 ORTHO05D012109 1.3e-09 68.6 91 46.2
Rhsim05G0037900 Rhododendron simsii HOM05D010576 ORTHO05D012109 3.0e-09 67.4 165 35.2
QL02p029599 Quercus lobata HOM05D000455 ORTHO05D000434 3.9e-09 67.0 90 43.3
Nn1g00300 Nelumbo nucifera HOM05D000455 ORTHO05D000434 5.1e-09 66.6 226 28.3
Actinidia15832 Actinidia chinensis HOM05D000455 ORTHO05D000434 1.5e-08 65.1 98 40.8
COL.COLO4_10746 Corchorus olitorius HOM05D000455 ORTHO05D000434 1.5e-08 65.1 84 40.5
Ah.12g052850 Amaranthus hybridus HOM05D000455 ORTHO05D000434 2.5e-08 64.3 84 39.3
CAN.G792.32 Capsicum annuum HOM05D000455 ORTHO05D000434 2.5e-08 64.3 84 40.5
AUR62019876 Chenopodium quinoa HOM05D000455 ORTHO05D000434 3.3e-08 63.9 84 38.1
Ah.07g197660 Amaranthus hybridus HOM05D000455 ORTHO05D000434 4.3e-08 63.5 84 39.3
CsaV3_4G006840 Cucumis sativus L. HOM05D000455 ORTHO05D000434 4.3e-08 63.5 84 40.5
Nitab4.5_0001962g0080 Nicotiana tabacum HOM05D000455 ORTHO05D000434 4.3e-08 63.5 119 33.6
TAR629G0003 Trochodendron aralioides HOM05D000455 ORTHO05D000434 4.3e-08 63.5 106 35.8
PSO063G2561 Papaver somniferum HOM05D000455 ORTHO05D000434 5.6e-08 63.2 101 37.6
PSO170G2314 Papaver somniferum HOM05D000455 ORTHO05D000434 5.6e-08 63.2 101 37.6
Sc01g0010440 Simmondsia chinensis HOM05D000455 ORTHO05D000434 5.6e-08 63.2 81 40.7
AUR62007012 Chenopodium quinoa HOM05D000455 ORTHO05D000434 7.3e-08 62.8 84 38.1
Thecc.03G302500 Theobroma cacao HOM05D000455 ORTHO05D000434 7.3e-08 62.8 84 39.3
Gorai.003G074300 Gossypium raimondii HOM05D000455 ORTHO05D000434 9.6e-08 62.4 84 40.5
MBI06_g44138_MAGBIO Magnolia biondii HOM05D000455 ORTHO05D000434 9.6e-08 62.4 106 36.8
PSO135G1031 Papaver somniferum HOM05D000455 ORTHO05D000434 9.6e-08 62.4 84 39.3
PSO384G5086 Papaver somniferum HOM05D000455 ORTHO05D000434 9.6e-08 62.4 84 39.3
DCAR_029869 Daucus carota HOM05D000455 ORTHO05D000434 1.2e-07 62.0 84 39.3
Gohir.D09G184100 Gossypium hirsutum HOM05D000455 ORTHO05D000434 1.6e-07 61.6 84 38.1
Medtr1g100970 Medicago truncatula HOM05D000455 ORTHO05D000434 1.6e-07 61.6 85 42.4
Rhsim05G0033800 Rhododendron simsii HOM05D000041 ORTHO05D012109 1.6e-07 61.6 419 29.4
Hund11373 Selenicereus undatus HOM05D000455 ORTHO05D000434 1.6e-07 61.6 99 38.4
VMungo0720G0806 Vigna mungo HOM05D000455 ORTHO05D000434 1.6e-07 61.6 101 35.6
MELO3C016260.2 Cucumis melo HOM05D000455 ORTHO05D000434 2.1e-07 61.2 84 39.3
Gohir.A02G095700 Gossypium hirsutum HOM05D000455 ORTHO05D000434 2.1e-07 61.2 84 39.3
GSVIVG01019600001 Vitis vinifera HOM05D000455 ORTHO05D000434 2.1e-07 61.2 81 39.5
Atru.chr9.1944 Acer truncatum HOM05D000455 ORTHO05D000434 2.8e-07 60.8 113 32.7
MSTRG.13735 Avicennia marina HOM05D000455 ORTHO05D000434 2.8e-07 60.8 84 36.9
Solyc08g082750.3 Solanum lycopersicum HOM05D000455 ORTHO05D000434 2.8e-07 60.8 89 39.3
Sopen08g030980 Solanum pennellii HOM05D000455 ORTHO05D000434 2.8e-07 60.8 89 39.3
THA.LOC104809320 Tarenaya hassleriana HOM05D000455 ORTHO05D000434 2.8e-07 60.8 113 36.3
vmacro13878 Vaccinium macrocarpon HOM05D000455 ORTHO05D000434 2.8e-07 60.8 81 40.7
CSS0018542 Camellia sinensis var. sinensis HOM05D000455 ORTHO05D000434 3.6e-07 60.5 102 34.3
Glyma.10G234100 Glycine max HOM05D000455 ORTHO05D000434 3.6e-07 60.5 84 39.3
Glyma.20G160200 Glycine max HOM05D000455 ORTHO05D000434 3.6e-07 60.5 84 40.5
Gohir.A09G189300 Gossypium hirsutum HOM05D000455 ORTHO05D000434 3.6e-07 60.5 84 36.9
Oeu009983.1 Olea europaea HOM05D000455 ORTHO05D000434 3.6e-07 60.5 101 36.6
ClCG07G011370 Citrullus lanatus HOM05D000455 ORTHO05D000434 4.7e-07 60.1 74 41.9
Peaxi162Scf00102g00189 Petunia axillaris HOM05D000455 ORTHO05D000434 4.7e-07 60.1 103 34.0
CiPaw.12G080700 Carya illinoinensis HOM05D000455 ORTHO05D000434 6.2e-07 59.7 84 36.9
Duzib205G1505 Durio zibethinus HOM05D000455 ORTHO05D000434 6.2e-07 59.7 84 38.1
Oeu041396.1 Olea europaea HOM05D000455 ORTHO05D000434 6.2e-07 59.7 81 39.5
Phvul.007G071900 Phaseolus vulgaris HOM05D000455 ORTHO05D000434 6.2e-07 59.7 101 35.6
Solyc08g008410.3 Solanum lycopersicum HOM05D000455 ORTHO05D000434 6.2e-07 59.7 119 31.9
TPR.G26977 Trifolium pratense HOM05D000455 ORTHO05D000434 6.2e-07 59.7 85 40.0
EL10Ac5g12952 Beta vulgaris HOM05D000455 ORTHO05D000434 8.1e-07 59.3 84 38.1
Cc08_g16400 Coffea canephora HOM05D000455 ORTHO05D000434 8.1e-07 59.3 84 39.3
CAN.G567.35 Capsicum annuum HOM05D000455 ORTHO05D000434 1.1e-06 58.9 89 38.2
Lj5g0025579 Lotus japonicus HOM05D000455 ORTHO05D000434 1.1e-06 58.9 84 39.3
Nitab4.5_0002793g0050 Nicotiana tabacum HOM05D000455 ORTHO05D000434 1.1e-06 58.9 89 38.2
Oeu041395.2 Olea europaea HOM05D000455 ORTHO05D000434 1.1e-06 58.9 81 39.5
Sabra03G0103600 Salix brachista HOM05D000455 ORTHO05D000434 1.1e-06 58.9 84 38.1
PGSC0003DMG401005796 Solanum tuberosum HOM05D000455 ORTHO05D000434 1.1e-06 58.9 118 33.1
Actinidia14159 Actinidia chinensis HOM05D000455 ORTHO05D010375 1.4e-06 58.5 87 43.7
Gorai.006G206500 Gossypium raimondii HOM05D000455 ORTHO05D000434 1.4e-06 58.5 84 38.1
Prupe.5G125000 Prunus persica HOM05D000455 ORTHO05D000434 1.4e-06 58.5 88 37.5
Sc22g0004830 Simmondsia chinensis HOM05D000455 ORTHO05D000434 1.4e-06 58.5 108 32.4
Actinidia22738 Actinidia chinensis HOM05D000455 ORTHO05D000434 1.8e-06 58.2 84 38.1
Potri.003G143000 Populus trichocarpa HOM05D000455 ORTHO05D000434 1.8e-06 58.2 365 24.4
Sed0008415 Sechium edule HOM05D000455 ORTHO05D000434 1.8e-06 58.2 87 36.8
Sopen08g004270 Solanum pennellii HOM05D000455 ORTHO05D000434 1.8e-06 58.2 119 31.9
TAR375G0327 Trochodendron aralioides HOM05D000455 ORTHO05D000434 1.8e-06 58.2 101 32.7
Cfa011968 Carpinus fangiana HOM05D000455 ORTHO05D000434 2.4e-06 57.8 102 33.3
Ciclev10018744m.g Citrus clementina HOM05D000455 ORTHO05D000434 2.4e-06 57.8 84 35.7
Nitab4.5_0002367g0110 Nicotiana tabacum HOM05D000455 ORTHO05D000434 2.4e-06 57.8 89 37.1
PGSC0003DMG402012256 Solanum tuberosum HOM05D000455 ORTHO05D000434 2.4e-06 57.8 89 37.1
arahy.Tifrunner.gnm1.ann1.62AJ6F Arachis hypogaea HOM05D000455 ORTHO05D000434 3.1e-06 57.4 84 36.9
arahy.Tifrunner.gnm1.ann1.K1SYDF Arachis hypogaea HOM05D000455 ORTHO05D000434 3.1e-06 57.4 84 36.9
CSS0015680 Camellia sinensis var. sinensis HOM05D000455 ORTHO05D000434 3.1e-06 57.4 72 40.3
Haze_09110 Corylus avellana HOM05D000455 ORTHO05D000434 3.1e-06 57.4 102 34.3
Manes.01G053000 Manihot esculenta HOM05D000455 ORTHO05D000434 3.1e-06 57.4 84 38.1
Peaxi162Scf00074g00543 Petunia axillaris HOM05D000455 ORTHO05D000434 3.1e-06 57.4 89 37.1
Dinv37495 Davidia involucrata HOM05D002718 ORTHO05D003269 4.0e-06 57.0 88 37.5
Hma1.2p1_0440F.1_g153600 Hydrangea macrophylla HOM05D000455 ORTHO05D000434 4.0e-06 57.0 84 35.7
FAN04G0646 Fragaria x ananassa HOM05D000455 ORTHO05D000434 5.2e-06 56.6 109 33.0
vmacro11342 Vaccinium macrocarpon HOM05D000455 ORTHO05D000434 5.2e-06 56.6 60 41.7
Oeu038539.1 Olea europaea HOM05D000455 ORTHO05D000434 6.9e-06 56.2 100 35.0
THA.LOC104806445 Tarenaya hassleriana HOM05D000455 ORTHO05D000434 6.9e-06 56.2 126 30.2
Gohir.D08G124900 Gossypium hirsutum HOM05D000455 ORTHO05D000434 9.0e-06 55.8 84 34.5


User provided reference genes

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