Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim05G0032500 Rhododendron simsii HOM05D005297 ORTHO05D006545 6.5e-120 434.1 224 100.0
Rhsim13G0108000 Rhododendron simsii HOM05D005297 ORTHO05D006545 3.3e-71 272.3 144 93.8
vmacro03296 Vaccinium macrocarpon HOM05D005297 ORTHO05D006545 4.3e-71 271.9 144 92.4
QL02p014091 Quercus lobata HOM05D005297 ORTHO05D006545 7.3e-71 271.2 144 93.1
Rhsim13G0108200 Rhododendron simsii HOM05D005297 ORTHO05D006545 7.3e-71 271.2 141 95.0
CSS0048581 Camellia sinensis var. sinensis HOM05D005297 ORTHO05D006545 1.4e-69 266.9 150 86.7
CSS0010276 Camellia sinensis var. sinensis HOM05D005297 ORTHO05D006545 2.0e-68 263.1 144 89.6
Haze_23424 Corylus avellana HOM05D005297 ORTHO05D006545 5.8e-68 261.5 144 88.2
Gorai.001G120900 Gossypium raimondii HOM05D005297 ORTHO05D006545 1.7e-67 260.0 144 88.2
Manes.11G159700 Manihot esculenta HOM05D005297 ORTHO05D006545 2.2e-67 259.6 144 86.8
PGR119G1280 Punica granatum HOM05D005297 ORTHO05D006545 2.2e-67 259.6 144 88.2
Atru.chr3.3335 Acer truncatum HOM05D005297 ORTHO05D006545 2.9e-67 259.2 144 87.5
Gohir.A07G108700 Gossypium hirsutum HOM05D005297 ORTHO05D006545 4.9e-67 258.5 144 87.5
Gohir.A07G108780 Gossypium hirsutum HOM05D005297 ORTHO05D006545 4.9e-67 258.5 144 87.5
HanXRQChr13g0408991 Helianthus annuus HOM05D005297 ORTHO05D006545 4.9e-67 258.5 144 86.1
Nn2g14072 Nelumbo nucifera HOM05D005297 ORTHO05D006545 4.9e-67 258.5 144 86.8
Manes.14G159600 Manihot esculenta HOM05D005297 ORTHO05D006545 6.4e-67 258.1 144 86.1
MELO3C003122.2 Cucumis melo HOM05D005297 ORTHO05D006545 8.3e-67 257.7 144 86.8
Prupe.6G124400 Prunus persica HOM05D005297 ORTHO05D006545 8.3e-67 257.7 144 86.8
Gohir.D07G112500 Gossypium hirsutum HOM05D005297 ORTHO05D006545 1.1e-66 257.3 144 86.8
Sed0022012 Sechium edule HOM05D005297 ORTHO05D006545 1.1e-66 257.3 144 88.2
TAR623G0730 Trochodendron aralioides HOM05D005297 ORTHO05D006545 1.1e-66 257.3 144 88.2
Dinv29444 Davidia involucrata HOM05D005297 ORTHO05D006545 1.4e-66 256.9 144 86.8
RcHm_v2.0_Chr5g0054901 Rosa chinensis HOM05D005297 ORTHO05D006545 1.4e-66 256.9 144 85.4
ECA236G0310 Erigeron canadensis HOM05D005297 ORTHO05D006545 1.9e-66 256.5 144 85.4
Potri.009G146100 Populus trichocarpa HOM05D005297 ORTHO05D006545 2.4e-66 256.1 144 86.8
Eucgr.J00466 Eucalyptus grandis HOM05D005297 ORTHO05D006545 3.2e-66 255.8 144 86.1
Sabra09G0113000 Salix brachista HOM05D005297 ORTHO05D006545 3.2e-66 255.8 181 72.9
Sabra09G0115400 Salix brachista HOM05D005297 ORTHO05D006545 3.2e-66 255.8 181 72.9
RcHm_v2.0_Chr5g0054661 Rosa chinensis HOM05D005297 ORTHO05D006545 4.1e-66 255.4 144 84.7
CsaV3_4G024870 Cucumis sativus L. HOM05D005297 ORTHO05D006545 7.1e-66 254.6 144 86.8
Lsat_1_v5_gn_8_117180 Lactuca sativa HOM05D005297 ORTHO05D006545 7.1e-66 254.6 144 84.0
MD11G1160800 Malus domestica HOM05D005297 ORTHO05D006545 7.1e-66 254.6 144 84.7
unitig_736.g22397 Utricularia gibba HOM05D005297 ORTHO05D006545 7.1e-66 254.6 144 86.8
Ca_09074_v3 Cicer arietinum L. HOM05D005297 ORTHO05D006545 9.2e-66 254.2 166 76.5
Hma1.2p1_0305F.1_g119460 Hydrangea macrophylla HOM05D005297 ORTHO05D006545 1.2e-65 253.8 136 90.4
Nitab4.5_0003532g0010 Nicotiana tabacum HOM05D005297 ORTHO05D006545 1.2e-65 253.8 184 71.2
MBI17_g16878_MAGBIO Magnolia biondii HOM05D005297 ORTHO05D006545 1.6e-65 253.4 143 83.2
Aqoxy4G02831 Aquilegia oxysepala HOM05D005297 ORTHO05D006545 2.1e-65 253.1 144 84.0
Solyc11g067150.2 Solanum lycopersicum HOM05D005297 ORTHO05D006545 2.1e-65 253.1 184 69.6
Sopen11g026830 Solanum pennellii HOM05D005297 ORTHO05D006545 2.1e-65 253.1 184 69.6
MSTRG.18743 Avicennia marina HOM05D005297 ORTHO05D006545 2.7e-65 252.7 179 71.5
Thecc.09G287800 Theobroma cacao HOM05D005297 ORTHO05D006545 2.7e-65 252.7 144 86.1
GSVIVG01036187001 Vitis vinifera HOM05D005297 ORTHO05D006545 2.7e-65 252.7 136 89.7
PGSC0003DMG400007409 Solanum tuberosum HOM05D005297 ORTHO05D006545 3.5e-65 252.3 184 69.6
Hund18738 Selenicereus undatus HOM05D005297 ORTHO05D006545 4.6e-65 251.9 142 85.2
THA.LOC104799541 Tarenaya hassleriana HOM05D005297 ORTHO05D006545 6.0e-65 251.5 144 84.0
Duzib150G0109 Durio zibethinus HOM05D005297 ORTHO05D006545 1.3e-64 250.4 144 84.7
CANSAT64G2769 Cannabis sativa HOM05D005297 ORTHO05D006545 1.7e-64 250.0 144 84.0
CAN.G644.6 Capsicum annuum HOM05D005297 ORTHO05D006545 2.3e-64 249.6 144 84.0
FAN21G1663 Fragaria x ananassa HOM05D005297 ORTHO05D006545 3.0e-64 249.2 144 83.3
SGA_v2.0_scaffold147G36360 Striga asiatica HOM05D005297 ORTHO05D006545 3.0e-64 249.2 142 83.8
TAR369G0691 Trochodendron aralioides HOM05D005297 ORTHO05D006545 3.9e-64 248.8 150 82.0
CiPaw.13G138500 Carya illinoinensis HOM05D005297 ORTHO05D006545 5.1e-64 248.4 167 76.6
Lalb_Chr24g0395231 Lupinus albus HOM05D005297 ORTHO05D006545 5.1e-64 248.4 144 81.2
SalBow6G5239 Salvia bowleyana HOM05D005297 ORTHO05D006545 5.1e-64 248.4 142 84.5
VMungo1080G0855 Vigna mungo HOM05D005392 ORTHO05D006709 5.1e-64 248.4 144 82.6
Lj2g0006626 Lotus japonicus HOM05D005297 ORTHO05D006545 6.6e-64 248.1 144 81.9
FAN16G3468 Fragaria x ananassa HOM05D005297 ORTHO05D006545 8.6e-64 247.7 144 82.6
Medtr4g088775 Medicago truncatula HOM05D005297 ORTHO05D006545 1.1e-63 247.3 144 81.9
Migut.N00940 Erythranthe guttata HOM05D005297 ORTHO05D006545 1.5e-63 246.9 184 67.4
Aa31LG6G1540 Aethionema arabicum HOM05D005297 ORTHO05D006545 3.3e-63 245.7 144 81.9
Carub.0006s3210 Capsella rubella HOM05D005297 ORTHO05D006545 3.3e-63 245.7 185 69.2
Glyma.12G183000 Glycine max HOM05D005297 ORTHO05D006545 3.3e-63 245.7 174 70.1
Sc15g0007560 Simmondsia chinensis HOM05D005297 ORTHO05D006545 3.3e-63 245.7 144 81.9
arahy.Tifrunner.gnm1.ann1.CT6H1M Arachis hypogaea HOM05D005297 ORTHO05D006545 4.3e-63 245.4 144 81.2
arahy.Tifrunner.gnm1.ann1.K2P72U Arachis hypogaea HOM05D005780 ORTHO05D006545 4.3e-63 245.4 139 83.5
FvH4_3g29610 Fragaria vesca HOM05D005297 ORTHO05D006545 4.3e-63 245.4 144 82.6
FAN11G1678 Fragaria x ananassa HOM05D005297 ORTHO05D006545 4.3e-63 245.4 144 82.6
Psat2g130440 Pisum sativum HOM05D005297 ORTHO05D006545 4.3e-63 245.4 144 81.2
Sc21g0007210 Simmondsia chinensis HOM05D005297 ORTHO05D006545 4.3e-63 245.4 175 70.3
Glyma.13G318100 Glycine max HOM05D005297 ORTHO05D006545 5.6e-63 245.0 144 80.6
PSO384G0067 Papaver somniferum HOM05D005297 ORTHO05D006545 5.6e-63 245.0 185 68.1
AL6G47810 Arabidopsis lyrata HOM05D005297 ORTHO05D006545 7.3e-63 244.6 144 82.6
PSO425G0036 Papaver somniferum HOM05D005297 ORTHO05D006545 7.3e-63 244.6 144 81.9
HPP92_006421 Vanilla planifolia HOM05D005297 ORTHO05D006545 7.3e-63 244.6 144 81.2
AUR62009792 Chenopodium quinoa HOM05D005297 ORTHO05D006545 9.5e-63 244.2 143 81.8
Nitab4.5_0021448g0010 Nicotiana tabacum HOM05D005297 ORTHO05D006545 9.5e-63 244.2 176 71.0
Peaxi162Scf00544g00918 Petunia axillaris HOM05D005297 ORTHO05D006545 9.5e-63 244.2 176 70.5
EL10Ac7g15793 Beta vulgaris HOM05D005297 ORTHO05D006545 1.2e-62 243.8 144 81.9
AT4G04190 Arabidopsis thaliana HOM05D005297 ORTHO05D006545 1.6e-62 243.4 144 81.9
CAN.G1177.8 Capsicum annuum HOM05D005297 ORTHO05D006545 1.6e-62 243.4 176 69.3
Medtr0227s0030 Medicago truncatula HOM05D005297 ORTHO05D006545 1.6e-62 243.4 173 69.9
PSO170G0247 Papaver somniferum HOM05D005297 ORTHO05D006545 1.6e-62 243.4 144 80.6
Phvul.005G125900 Phaseolus vulgaris HOM05D005297 ORTHO05D006545 1.6e-62 243.4 144 81.2
CARHR253330 Cardamine hirsuta HOM05D005297 ORTHO05D006545 2.1e-62 243.0 144 81.2
Cc01_g09520 Coffea canephora HOM05D005297 ORTHO05D006545 2.1e-62 243.0 136 86.8
BcaC04g21280 Brassica carinata HOM05D005297 ORTHO05D006545 2.8e-62 242.7 144 81.9
Thhalv10029010m.g Eutrema salsugineum HOM05D005297 ORTHO05D006545 4.7e-62 241.9 144 81.2
Sp6g04610 Schrenkiella parvula HOM05D005297 ORTHO05D006545 4.7e-62 241.9 184 67.9
BcaB01g01797 Brassica carinata HOM05D005297 ORTHO05D006545 8.1e-62 241.1 144 81.2
COL.COLO4_19936 Corchorus olitorius HOM05D005297 ORTHO05D006545 1.1e-61 240.7 136 85.3
Lsat_1_v5_gn_8_90380 Lactuca sativa HOM05D005297 ORTHO05D006545 1.8e-61 240.0 136 83.1
A09p26430 Brassica napus HOM05D005297 ORTHO05D006545 3.1e-61 239.2 142 81.7
C09p33610 Brassica napus HOM05D002056 ORTHO05D002289 3.1e-61 239.2 142 81.7
Sp7g17550 Schrenkiella parvula HOM05D005297 ORTHO05D006545 4.0e-61 238.8 181 67.4
Cpa.g.sc32.130 Carica papaya HOM05D005297 ORTHO05D006545 6.8e-61 238.0 176 68.8
Ciclev10029400m.g Citrus clementina HOM05D005297 ORTHO05D006545 6.8e-61 238.0 143 82.5
PSO801G0702 Papaver somniferum HOM05D005297 ORTHO05D006545 8.9e-61 237.7 144 79.9
arahy.Tifrunner.gnm1.ann1.Q11QUE Arachis hypogaea HOM05D005297 ORTHO05D006545 1.2e-60 237.3 156 76.3
Os04g0410300 Oryza sativa ssp. japonica HOM05D005297 ORTHO05D006545 1.2e-60 237.3 144 79.2
Zm00001eb084080 Zea mays HOM05D005297 ORTHO05D006545 3.4e-60 235.7 144 78.5
Nitab4.5_0024933g0010 Nicotiana tabacum HOM05D005297 ORTHO05D006545 5.8e-60 235.0 138 83.3
ATR0820G241 Amborella trichopoda HOM05D005297 ORTHO05D006545 9.9e-60 234.2 171 67.8
PSO339G0592 Papaver somniferum HOM05D005297 ORTHO05D006545 1.3e-59 233.8 144 77.8
TWI79G0927 Tripterygium wilfordii HOM05D005297 ORTHO05D006545 3.7e-59 232.3 144 78.5
TWI79G0105 Tripterygium wilfordii HOM05D005297 ORTHO05D006545 4.9e-59 231.9 144 78.5
BolC9t56195H Brassica oleracea HOM05D002056 ORTHO05D002289 2.4e-58 229.6 137 81.0
BraA09t38217Z Brassica rapa HOM05D005297 ORTHO05D006545 2.4e-58 229.6 137 81.0
PSO339G2689 Papaver somniferum HOM05D005297 ORTHO05D006545 5.4e-58 228.4 144 77.1
PSO782G5408 Papaver somniferum HOM05D005297 ORTHO05D006545 2.1e-57 226.5 148 75.0
Os01g0191000 Oryza sativa ssp. japonica HOM05D005297 ORTHO05D006545 3.3e-55 219.2 175 63.4
SEGI_17822 Sequoiadendron giganteum HOM05D005297 ORTHO05D006545 4.3e-55 218.8 179 61.5
Thhalv10005498m.g Eutrema salsugineum HOM05D005297 ORTHO05D006545 4.7e-54 215.3 145 73.8
Rhsim13G0107700 Rhododendron simsii HOM05D005297 ORTHO05D006545 6.2e-54 214.9 144 78.5
CSS0004713 Camellia sinensis var. sinensis HOM05D005297 ORTHO05D006545 2.0e-52 209.9 155 71.0
Medtr4g073910 Medicago truncatula HOM05D005297 ORTHO05D006545 3.4e-52 209.1 152 71.1
AUR62039239 Chenopodium quinoa HOM05D005297 ORTHO05D006545 1.1e-50 204.1 140 73.6
Pp3c27_2700 Physcomitrium patens HOM05D005297 ORTHO05D006545 1.3e-48 197.2 138 65.2
Lj2A987T34 Lonicera japonica HOM05D005297 ORTHO05D006545 5.1e-48 195.3 109 87.2
CDE11G0319 Ceratophyllum demersum HOM05D005297 ORTHO05D006545 1.1e-47 194.1 117 78.6
Duzib168G0206 Durio zibethinus HOM05D005297 ORTHO05D006545 1.4e-45 187.2 117 81.2
arahy.Tifrunner.gnm1.ann1.S3X3J8 Arachis hypogaea HOM05D005297 ORTHO05D006545 2.4e-45 186.4 110 80.0
Mapoly0068s0054 Marchantia polymorpha HOM05D005297 ORTHO05D006545 7.6e-44 181.4 144 57.6
Actinidia24196 Actinidia chinensis HOM05D005392 ORTHO05D006709 4.9e-43 178.7 129 70.5
MD03G1139300 Malus domestica HOM05D005297 ORTHO05D006545 3.9e-40 169.1 126 69.0
SHI11151 Sapria himalayana HOM05D005297 ORTHO05D000023 6.9e-37 158.3 111 71.2
PSO782G3247 Papaver somniferum HOM05D005297 ORTHO05D006545 3.4e-36 156.0 99 76.8
CBR_g82609 Chara braunii HOM05D005297 ORTHO05D006545 4.5e-36 155.6 138 55.1
TPR.G2691 Trifolium pratense HOM05D005297 ORTHO05D006545 5.8e-36 155.2 98 75.5
Ca_05140_v3 Cicer arietinum L. HOM05D005297 ORTHO05D012218 1.7e-35 153.7 99 72.7
Gorai.006G055300 Gossypium raimondii HOM05D005297 ORTHO05D006545 6.7e-32 141.7 77 85.7
Gorai.003G076100 Gossypium raimondii HOM05D005297 ORTHO05D006545 2.5e-31 139.8 119 61.3
Gorai.003G055900 Gossypium raimondii HOM05D005297 ORTHO05D006545 1.1e-29 134.4 119 59.7
CSS0043339 Camellia sinensis var. sinensis HOM05D005297 ORTHO05D006545 9.0e-29 131.3 132 56.1
Gohir.D09G053026 Gossypium hirsutum HOM05D005297 ORTHO05D006545 2.2e-27 126.7 77 79.2
Gorai.005G178100 Gossypium raimondii HOM05D005297 ORTHO05D006545 2.9e-27 126.3 77 75.3
arahy.Tifrunner.gnm1.ann1.LDL4WN Arachis hypogaea HOM05D005297 ORTHO05D006545 4.9e-27 125.6 93 66.7
DCAR_001100 Daucus carota HOM05D005297 ORTHO05D006545 1.1e-26 124.4 93 66.7
Gohir.D06G133032 Gossypium hirsutum HOM05D005297 ORTHO05D006545 1.4e-26 124.0 68 83.8
RcHm_v2.0_Chr5g0054771 Rosa chinensis HOM05D005297 ORTHO05D006545 3.5e-25 119.4 120 60.0
QL02p014117 Quercus lobata HOM05D005297 ORTHO05D006545 6.7e-24 115.2 64 87.5
Oeu050204.1 Olea europaea HOM05D005297 ORTHO05D006545 2.0e-20 103.6 153 44.4
Gohir.D02G158550 Gossypium hirsutum HOM05D005297 ORTHO05D006545 4.2e-18 95.9 77 63.6
TPR.G32973 Trifolium pratense HOM05D005297 ORTHO05D006545 3.6e-17 92.8 52 84.6
C02p40370 Brassica napus HOM05D000848 ORTHO05D000007 1.3e-16 90.9 66 63.6
Oeu046141.1 Olea europaea HOM05D005297 ORTHO05D006545 5.7e-15 85.5 49 83.7
BolC2t10071H Brassica oleracea HOM05D005297 ORTHO05D000007 1.8e-13 80.5 67 59.7
Psat2g121320 Pisum sativum HOM05D005297 ORTHO05D006545 2.4e-13 80.1 58 60.3
PSO541G0924 Papaver somniferum HOM05D005117 ORTHO05D005956 4.8e-06 55.8 33 78.8


User provided reference genes

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