Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim05G0023400 Rhododendron simsii HOM05D010576 ORTHO05D012109 0.0e+00 1141.7 582 100.0
Rhsim05G0036800 Rhododendron simsii HOM05D010576 ORTHO05D012109 5.5e-70 269.6 170 82.4
Rhsim02G0081300 Rhododendron simsii HOM05D001647 ORTHO05D001191 9.8e-43 179.1 115 77.4
Rhsim05G0034400 Rhododendron simsii HOM05D000577 ORTHO05D012109 9.8e-35 152.5 237 46.0
vmacro10804 Vaccinium macrocarpon HOM05D000126 ORTHO05D022121 2.9e-26 124.4 273 38.1
vmacro17215 Vaccinium macrocarpon HOM05D000126 ORTHO05D022121 6.4e-26 123.2 208 43.3
Rhsim05G0033900 Rhododendron simsii HOM05D000577 ORTHO05D001093 1.6e-24 118.6 240 41.7
Rhsim05G0024700 Rhododendron simsii HOM05D010576 ORTHO05D012109 3.6e-21 107.5 266 37.6
Rhsim05G0025600 Rhododendron simsii HOM05D010576 ORTHO05D012109 3.6e-21 107.5 266 37.6
CSS0045042 Camellia sinensis var. sinensis HOM05D001647 ORTHO05D017173 2.3e-20 104.8 145 47.6
Dinv22746 Davidia involucrata HOM05D001647 ORTHO05D001191 5.2e-20 103.6 105 50.5
CSS0009907 Camellia sinensis var. sinensis HOM05D001647 ORTHO05D017173 4.4e-19 100.5 145 46.9
Rhsim05G0037400 Rhododendron simsii HOM05D010576 ORTHO05D012109 1.7e-18 98.6 172 40.1
Atru.chr4.2956 Acer truncatum HOM05D001647 ORTHO05D001191 2.9e-18 97.8 98 52.0
MSTRG.27406 Avicennia marina HOM05D001647 ORTHO05D001191 6.4e-18 96.7 119 57.1
Lj3A10G10 Lonicera japonica HOM05D001647 ORTHO05D001191 6.4e-18 96.7 112 48.2
Ciclev10020228m.g Citrus clementina HOM05D001647 ORTHO05D001191 1.4e-17 95.5 98 59.2
RhsimUnG0076800 Rhododendron simsii HOM05D010576 ORTHO05D012109 1.4e-17 95.5 177 40.1
CSS0014342 Camellia sinensis var. sinensis HOM05D001647 ORTHO05D017173 1.9e-17 95.1 92 54.3
Aqoxy6G01579 Aquilegia oxysepala HOM05D001647 ORTHO05D001191 9.2e-17 92.8 112 49.1
Nn1g09609 Nelumbo nucifera HOM05D001647 ORTHO05D001191 1.2e-16 92.4 100 60.0
Aqoxy6G01582 Aquilegia oxysepala HOM05D001647 ORTHO05D001191 1.6e-16 92.0 112 49.1
Rhsim05G0033700 Rhododendron simsii HOM05D000041 ORTHO05D012109 3.5e-16 90.9 179 42.5
Cc04_g16720 Coffea canephora HOM05D001647 ORTHO05D001191 4.6e-16 90.5 109 47.7
Oeu053823.2 Olea europaea HOM05D001647 ORTHO05D001191 6.0e-16 90.1 83 73.5
QL01p055435 Quercus lobata HOM05D001647 ORTHO05D017173 6.0e-16 90.1 100 50.0
QL10p050116 Quercus lobata HOM05D001647 ORTHO05D001191 6.0e-16 90.1 100 50.0
MD04G1042300 Malus domestica HOM05D001647 ORTHO05D001191 1.3e-15 89.0 130 43.8
Thecc.04G177300 Theobroma cacao HOM05D001647 ORTHO05D001191 2.3e-15 88.2 100 48.0
CsaV3_3G040890 Cucumis sativus L. HOM05D001647 ORTHO05D001191 3.0e-15 87.8 84 69.0
Cc03_g11950 Coffea canephora HOM05D001647 ORTHO05D001191 5.1e-15 87.0 109 54.1
Duzib212G0802 Durio zibethinus HOM05D001647 ORTHO05D001191 8.6e-15 86.3 105 47.6
VMungo1127G2188 Vigna mungo HOM05D001647 ORTHO05D001191 1.5e-14 85.5 93 52.7
MELO3C009824.2 Cucumis melo HOM05D001647 ORTHO05D001191 1.9e-14 85.1 82 59.8
unitig_37.g12021 Utricularia gibba HOM05D001647 ORTHO05D001191 1.9e-14 85.1 83 69.9
Cpa.g.sc9.296 Carica papaya HOM05D001647 ORTHO05D001191 2.5e-14 84.7 96 61.5
Migut.D01562 Erythranthe guttata HOM05D001647 ORTHO05D001191 2.5e-14 84.7 124 51.6
A03p26360 Brassica napus HOM05D001647 ORTHO05D001191 3.3e-14 84.3 128 42.2
Rhsim05G0077200 Rhododendron simsii HOM05D010576 ORTHO05D012109 3.3e-14 84.3 116 48.3
MBI08_g20601_MAGBIO Magnolia biondii HOM05D001647 ORTHO05D001191 4.3e-14 84.0 101 48.5
Prupe.1G196500 Prunus persica HOM05D001647 ORTHO05D001191 5.6e-14 83.6 117 41.9
BcaC01g04968 Brassica carinata HOM05D001647 ORTHO05D001191 7.3e-14 83.2 128 42.2
BolC3t15505H Brassica oleracea HOM05D001647 ORTHO05D001191 7.3e-14 83.2 128 42.2
CiPaw.02G054100 Carya illinoinensis HOM05D001647 ORTHO05D001191 7.3e-14 83.2 90 48.9
AUR62002323 Chenopodium quinoa HOM05D001647 ORTHO05D001191 7.3e-14 83.2 90 46.7
THA.LOC104815857 Tarenaya hassleriana HOM05D001647 ORTHO05D001191 7.3e-14 83.2 122 42.6
RcHm_v2.0_Chr4g0406531 Rosa chinensis HOM05D001647 ORTHO05D001191 1.6e-13 82.0 94 46.8
Phvul.011G053900 Phaseolus vulgaris HOM05D001647 ORTHO05D001191 2.1e-13 81.6 88 52.3
arahy.Tifrunner.gnm1.ann1.G4MAIF Arachis hypogaea HOM05D001647 ORTHO05D001191 2.8e-13 81.3 93 63.4
ClCG10G015540 Citrullus lanatus HOM05D001647 ORTHO05D001191 2.8e-13 81.3 82 50.0
Medtr4g067300 Medicago truncatula HOM05D001647 ORTHO05D001191 2.8e-13 81.3 98 53.1
AT2G28480 Arabidopsis thaliana HOM05D001647 ORTHO05D001191 3.6e-13 80.9 113 44.2
arahy.Tifrunner.gnm1.ann1.0Q1I8G Arachis hypogaea HOM05D001647 ORTHO05D001191 3.6e-13 80.9 90 66.7
C04p22880 Brassica napus HOM05D001647 ORTHO05D001191 3.6e-13 80.9 132 39.4
AUR62023863 Chenopodium quinoa HOM05D001647 ORTHO05D001191 4.7e-13 80.5 89 46.1
Rhsim05G0077100 Rhododendron simsii HOM05D010576 ORTHO05D012109 4.7e-13 80.5 177 37.3
Ca_20792_v3 Cicer arietinum L. HOM05D001647 ORTHO05D001191 6.2e-13 80.1 78 51.3
COL.COLO4_16174 Corchorus olitorius HOM05D001647 ORTHO05D001191 8.1e-13 79.7 100 43.0
C03p31620 Brassica napus HOM05D001647 ORTHO05D001191 1.1e-12 79.3 128 40.6
CARHR121430 Cardamine hirsuta HOM05D001647 ORTHO05D001191 1.1e-12 79.3 82 51.2
Aa31LG5G7750 Aethionema arabicum HOM05D001528 ORTHO05D002760 1.4e-12 79.0 82 51.2
AL4G21530 Arabidopsis lyrata HOM05D001647 ORTHO05D001191 1.4e-12 79.0 82 51.2
Gorai.006G229000 Gossypium raimondii HOM05D001647 ORTHO05D001191 1.4e-12 79.0 99 45.5
Psat7g209920 Pisum sativum HOM05D001647 ORTHO05D001191 1.4e-12 79.0 82 53.7
FAN07G0844 Fragaria x ananassa HOM05D001647 ORTHO05D001191 1.8e-12 78.6 91 47.3
Glyma.12G051900 Glycine max HOM05D001647 ORTHO05D001191 1.8e-12 78.6 92 55.4
Sp4g11300 Schrenkiella parvula HOM05D001647 ORTHO05D001191 1.8e-12 78.6 129 39.5
Lalb_Chr03g0026081 Lupinus albus HOM05D001647 ORTHO05D001191 2.4e-12 78.2 86 47.7
DCAR_009853 Daucus carota HOM05D001647 ORTHO05D001191 3.1e-12 77.8 107 41.1
FvH4_4g10890 Fragaria vesca HOM05D001647 ORTHO05D001191 4.0e-12 77.4 114 43.9
FAN12G2494 Fragaria x ananassa HOM05D001647 ORTHO05D001191 4.0e-12 77.4 115 43.5
FAN17G2196 Fragaria x ananassa HOM05D001647 ORTHO05D001191 4.0e-12 77.4 91 47.3
Actinidia34598 Actinidia chinensis HOM05D001647 ORTHO05D017173 5.2e-12 77.0 91 58.2
Thhalv10016829m.g Eutrema salsugineum HOM05D001647 ORTHO05D001191 5.2e-12 77.0 82 48.8
Gohir.D09G205000 Gossypium hirsutum HOM05D001647 ORTHO05D001191 6.8e-12 76.6 99 44.4
Lj6C11T4 Lonicera japonica HOM05D001647 ORTHO05D017173 6.8e-12 76.6 127 41.7
BcaB01g03105 Brassica carinata HOM05D001647 ORTHO05D001191 8.9e-12 76.3 129 40.3
CSS0046209 Camellia sinensis var. sinensis HOM05D001647 ORTHO05D017173 1.2e-11 75.9 78 52.6
EL10Ac3g05979 Beta vulgaris HOM05D001647 ORTHO05D001191 1.5e-11 75.5 89 43.8
Gohir.A09G211500 Gossypium hirsutum HOM05D001647 ORTHO05D001191 1.5e-11 75.5 135 37.8
Potri.007G129600 Populus trichocarpa HOM05D001647 ORTHO05D001191 2.0e-11 75.1 82 47.6
Ah.07g202130 Amaranthus hybridus HOM05D001647 ORTHO05D001191 3.4e-11 74.3 109 38.5
Sc19g0002950 Simmondsia chinensis HOM05D001647 ORTHO05D001191 3.4e-11 74.3 105 40.0
Cfa015176 Carpinus fangiana HOM05D001647 ORTHO05D001191 4.4e-11 73.9 100 43.0
vmacro23119 Vaccinium macrocarpon HOM05D000126 ORTHO05D022121 4.4e-11 73.9 165 37.0
Carub.0004s0942 Capsella rubella HOM05D001647 ORTHO05D001191 5.8e-11 73.6 122 41.8
Peaxi162Scf00141g00924 Petunia axillaris HOM05D001647 ORTHO05D001191 1.7e-10 72.0 89 51.7
Sabra07G0105500 Salix brachista HOM05D001647 ORTHO05D001191 2.2e-10 71.6 85 43.5
ATR0824G265 Amborella trichopoda HOM05D001647 ORTHO05D017173 2.9e-10 71.2 79 45.6
Manes.04G043600 Manihot esculenta HOM05D001647 ORTHO05D001191 2.9e-10 71.2 80 47.5
Hund03168 Selenicereus undatus HOM05D001647 ORTHO05D017173 4.9e-10 70.5 90 42.2
BolC4t23784H Brassica oleracea HOM05D001647 ORTHO05D001191 6.4e-10 70.1 132 36.4
TPR.G34241 Trifolium pratense HOM05D001647 ORTHO05D001191 6.4e-10 70.1 82 62.2
Rhsim05G0025000 Rhododendron simsii HOM05D010576 ORTHO05D012109 1.1e-09 69.3 195 36.4
HanXRQChr01g0023811 Helianthus annuus HOM05D001647 ORTHO05D001191 1.4e-09 68.9 109 51.4
SGA_v2.0_scaffold221G42702 Striga asiatica HOM05D001647 ORTHO05D001191 1.4e-09 68.9 79 46.8
Rhsim05G0036400 Rhododendron simsii HOM05D000002 ORTHO05D000001 1.9e-09 68.6 119 42.9
Rhsim05G0037300 Rhododendron simsii HOM05D000234 ORTHO05D012109 3.2e-09 67.8 125 44.8
SGA_v2.0_scaffold2G01171 Striga asiatica HOM05D029485 ORTHO05D026428 3.2e-09 67.8 56 57.1
Rhsim05G0037000 Rhododendron simsii HOM05D010576 ORTHO05D012109 7.1e-09 66.6 151 32.5
Lsat_1_v5_gn_1_77501 Lactuca sativa HOM05D001647 ORTHO05D001191 2.1e-08 65.1 132 35.6
Lj3g0005963 Lotus japonicus HOM05D001647 ORTHO05D001191 2.1e-08 65.1 82 43.9
TWI15G0581 Tripterygium wilfordii HOM05D001647 ORTHO05D001191 2.7e-08 64.7 76 47.4
ECA248G3160 Erigeron canadensis HOM05D001647 ORTHO05D001191 1.3e-07 62.4 72 45.8
Sed0028231 Sechium edule HOM05D001647 ORTHO05D001191 3.9e-07 60.8 72 44.4
Solyc09g005270.3 Solanum lycopersicum HOM05D001647 ORTHO05D001191 8.7e-07 59.7 58 58.6
PGSC0003DMG400011786 Solanum tuberosum HOM05D001647 ORTHO05D001191 8.7e-07 59.7 58 58.6
Rhsim05G0036600 Rhododendron simsii HOM05D010576 ORTHO05D012109 1.5e-06 58.9 142 32.4
Sopen09g001240 Solanum pennellii HOM05D001647 ORTHO05D001191 7.3e-06 56.6 58 58.6
SalBow3G2902 Salvia bowleyana HOM05D001647 ORTHO05D001191 9.6e-06 56.2 59 50.8


User provided reference genes

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