Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim05G0023000 Rhododendron simsii HOM05D009487 ORTHO05D011434 2.6e-230 801.6 378 100.0
Rhsim05G0023100 Rhododendron simsii HOM05D009487 ORTHO05D011434 3.4e-169 598.6 375 77.6
RhsimUnG0032700 Rhododendron simsii HOM05D009487 ORTHO05D011434 4.1e-159 565.1 383 75.5
RhsimUnG0032600 Rhododendron simsii HOM05D009487 ORTHO05D011434 1.2e-155 553.5 370 75.4
RhsimUnG0032500 Rhododendron simsii HOM05D009487 ORTHO05D011434 3.6e-155 552.0 370 74.1
RhsimUnG0188900 Rhododendron simsii HOM05D009487 ORTHO05D011434 8.9e-154 547.4 365 75.6
RhsimUnG0144900 Rhododendron simsii HOM05D009487 ORTHO05D011434 9.8e-153 543.9 365 75.3
RhsimUnG0144600 Rhododendron simsii HOM05D009487 ORTHO05D011434 2.9e-152 542.3 365 73.4
RhsimUnG0144700 Rhododendron simsii HOM05D009487 ORTHO05D011434 1.3e-149 533.5 365 74.8
Rhsim05G0150400 Rhododendron simsii HOM05D009487 ORTHO05D011434 1.1e-124 450.7 315 71.1
RhsimUnG0188800 Rhododendron simsii HOM05D009487 ORTHO05D011434 2.3e-109 399.8 313 65.5
Rhsim05G0023300 Rhododendron simsii HOM05D009487 ORTHO05D011434 5.1e-101 372.1 394 53.0
Hma1.2p1_0071F.1_g037940 Hydrangea macrophylla HOM05D009487 ORTHO05D011434 2.5e-31 140.6 331 32.6
Hma1.2p1_0071F.1_g037920 Hydrangea macrophylla HOM05D009487 ORTHO05D011434 1.2e-30 138.3 332 32.2
Rhsim13G0006900 Rhododendron simsii HOM05D009487 ORTHO05D011434 1.1e-26 125.2 318 30.5
TAR371G0718 Trochodendron aralioides HOM05D009487 ORTHO05D011434 1.4e-26 124.8 327 30.3
Nn1g09219 Nelumbo nucifera HOM05D009487 ORTHO05D011434 3.1e-21 107.1 315 28.9
DCAR_025206 Daucus carota HOM05D009487 ORTHO05D011434 4.4e-20 103.2 313 27.8
CSS0036745 Camellia sinensis var. sinensis HOM05D009487 ORTHO05D011434 9.9e-20 102.1 338 26.9
Lj9C465T16 Lonicera japonica HOM05D009487 ORTHO05D011434 1.7e-19 101.3 322 25.8
DCAR_005359 Daucus carota HOM05D009487 ORTHO05D011434 3.2e-18 97.1 322 25.8
Nn2g13898 Nelumbo nucifera HOM05D009487 ORTHO05D011434 2.1e-17 94.4 192 31.2
DCAR_025207 Daucus carota HOM05D009487 ORTHO05D011434 7.8e-17 92.4 308 26.0
DCAR_025205 Daucus carota HOM05D000041 ORTHO05D008933 5.1e-16 89.7 319 24.8
Lj9C465T15 Lonicera japonica HOM05D009487 ORTHO05D011434 1.1e-13 82.0 267 27.7
Aqoxy2G04015 Aquilegia oxysepala HOM05D026504 ORTHO05D011434 1.8e-13 81.3 339 24.2
MBI14_g22986_MAGBIO Magnolia biondii HOM05D001286 ORTHO05D000440 6.9e-13 79.3 192 30.7
Hund03994 Selenicereus undatus HOM05D001286 ORTHO05D000440 9.0e-13 79.0 196 28.1
Aqoxy2G04013 Aquilegia oxysepala HOM05D026504 ORTHO05D011434 1.2e-12 78.6 339 23.9
COL.COLO4_29718 Corchorus olitorius HOM05D001286 ORTHO05D000440 1.2e-12 78.6 174 32.8
Ciclev10017666m.g Citrus clementina HOM05D000151 ORTHO05D000074 2.6e-12 77.4 181 29.3
ECA236G4173 Erigeron canadensis HOM05D001286 ORTHO05D000440 2.6e-12 77.4 174 30.5
Aqoxy2G00485 Aquilegia oxysepala HOM05D026504 ORTHO05D011434 3.4e-12 77.0 160 32.5
TAR369G0559 Trochodendron aralioides HOM05D001286 ORTHO05D000440 3.4e-12 77.0 234 28.2
DCAR_025209 Daucus carota HOM05D009487 ORTHO05D011434 5.8e-12 76.3 100 37.0
Lsat_1_v5_gn_5_165000 Lactuca sativa HOM05D001286 ORTHO05D000440 5.8e-12 76.3 187 29.4
Cfa016618 Carpinus fangiana HOM05D001286 ORTHO05D000440 9.9e-12 75.5 174 31.6
Rhsim07G0047500 Rhododendron simsii HOM05D009487 ORTHO05D011434 9.9e-12 75.5 300 27.7
TAR369G0746 Trochodendron aralioides HOM05D001286 ORTHO05D000440 9.9e-12 75.5 234 27.8
Aqoxy2G00209 Aquilegia oxysepala HOM05D009487 ORTHO05D011434 1.3e-11 75.1 188 28.7
Sc20g0006330 Simmondsia chinensis HOM05D001286 ORTHO05D000440 1.3e-11 75.1 172 30.2
Rhsim08G0204600 Rhododendron simsii HOM05D001286 ORTHO05D000440 1.7e-11 74.7 333 22.2
TPR.G9893 Trifolium pratense HOM05D001286 ORTHO05D000440 1.7e-11 74.7 179 30.2
Carub.0006s3152 Capsella rubella HOM05D001286 ORTHO05D000440 2.2e-11 74.3 175 32.0
Ca_00899_v3 Cicer arietinum L. HOM05D001286 ORTHO05D000440 2.2e-11 74.3 174 31.0
Lj5g0005331 Lotus japonicus HOM05D001286 ORTHO05D000440 2.2e-11 74.3 179 29.6
Phvul.001G190800 Phaseolus vulgaris HOM05D001286 ORTHO05D000440 2.2e-11 74.3 174 30.5
QL07p038675 Quercus lobata HOM05D001286 ORTHO05D000440 2.2e-11 74.3 180 30.6
Duzib106G1385 Durio zibethinus HOM05D001286 ORTHO05D000440 2.9e-11 73.9 174 31.6
Thecc.05G090300 Theobroma cacao HOM05D001286 ORTHO05D000440 2.9e-11 73.9 174 31.6
VMungo1383G3108 Vigna mungo HOM05D001286 ORTHO05D000440 2.9e-11 73.9 174 29.9
Dinv31694 Davidia involucrata HOM05D001286 ORTHO05D000440 4.9e-11 73.2 175 29.7
DCAR_020742 Daucus carota HOM05D001286 ORTHO05D000440 6.4e-11 72.8 198 29.3
Glyma.10G073700 Glycine max HOM05D001286 ORTHO05D000440 6.4e-11 72.8 174 30.5
Lsat_1_v5_gn_8_77420 Lactuca sativa HOM05D001286 ORTHO05D000440 6.4e-11 72.8 179 28.5
Manes.08G026100 Manihot esculenta HOM05D001286 ORTHO05D000440 6.4e-11 72.8 174 30.5
Glyma.13G154400 Glycine max HOM05D001286 ORTHO05D000440 8.4e-11 72.4 174 30.5
Medtr1g059840 Medicago truncatula HOM05D001286 ORTHO05D000440 8.4e-11 72.4 179 30.2
arahy.Tifrunner.gnm1.ann1.2MM3YT Arachis hypogaea HOM05D001286 ORTHO05D000440 1.1e-10 72.0 199 28.6
arahy.Tifrunner.gnm1.ann1.4DR6J6 Arachis hypogaea HOM05D001286 ORTHO05D000440 1.1e-10 72.0 199 28.6
Duzib093G1514 Durio zibethinus HOM05D001286 ORTHO05D000440 1.1e-10 72.0 174 31.0
Rhsim08G0205300 Rhododendron simsii HOM05D001286 ORTHO05D000440 1.4e-10 71.6 333 22.5
CSS0048691 Camellia sinensis var. sinensis HOM05D001286 ORTHO05D000440 1.9e-10 71.2 175 28.6
Haze_19623 Corylus avellana HOM05D001286 ORTHO05D000440 1.9e-10 71.2 174 31.0
ECA248G0397 Erigeron canadensis HOM05D001286 ORTHO05D000440 1.9e-10 71.2 179 30.2
Carub.0006s3153 Capsella rubella HOM05D001286 ORTHO05D000440 2.4e-10 70.9 174 29.3
HanXRQChr01g0010051 Helianthus annuus HOM05D001286 ORTHO05D000440 3.2e-10 70.5 175 28.6
CSS0034097 Camellia sinensis var. sinensis HOM05D000151 ORTHO05D000074 5.4e-10 69.7 199 28.6
Glyma.19G194964 Glycine max HOM05D001286 ORTHO05D000440 5.4e-10 69.7 174 29.9
Atru.chr8.1486 Acer truncatum HOM05D001286 ORTHO05D000440 7.1e-10 69.3 174 29.3
BraA03t12138Z Brassica rapa HOM05D001286 ORTHO05D000440 7.1e-10 69.3 200 27.0
CiPaw.10G010500 Carya illinoinensis HOM05D001286 ORTHO05D000440 7.1e-10 69.3 128 33.6
Actinidia05421 Actinidia chinensis HOM05D001286 ORTHO05D000440 9.3e-10 68.9 180 28.3
Ah.08g210520 Amaranthus hybridus HOM05D001286 ORTHO05D000440 9.3e-10 68.9 195 27.7
Aqoxy4G00872 Aquilegia oxysepala HOM05D026504 ORTHO05D011434 9.3e-10 68.9 107 39.3
Cc06_g05910 Coffea canephora HOM05D001286 ORTHO05D000440 9.3e-10 68.9 175 29.7
Sp4g03050 Schrenkiella parvula HOM05D001286 ORTHO05D000440 9.3e-10 68.9 256 27.0
TAR636G2415 Trochodendron aralioides HOM05D001286 ORTHO05D000440 9.3e-10 68.9 190 27.4
AL6G47240 Arabidopsis lyrata HOM05D001286 ORTHO05D000440 1.2e-09 68.6 206 28.2
EL10Ac7g16907 Beta vulgaris HOM05D001286 ORTHO05D000440 1.2e-09 68.6 179 29.6
A03p29450 Brassica napus HOM05D000315 ORTHO05D000440 1.2e-09 68.6 200 27.0
Lalb_Chr01g0018111 Lupinus albus HOM05D001286 ORTHO05D000440 1.2e-09 68.6 150 30.7
Dinv14513 Davidia involucrata HOM05D008995 ORTHO05D000074 1.6e-09 68.2 194 25.8
BraA03t12137Z Brassica rapa HOM05D001286 ORTHO05D000440 2.1e-09 67.8 185 28.6
Nitab4.5_0000692g0040 Nicotiana tabacum HOM05D001286 ORTHO05D000440 2.1e-09 67.8 185 28.1
Prupe.7G109000 Prunus persica HOM05D001286 ORTHO05D000440 2.7e-09 67.4 174 27.6
RcHm_v2.0_Chr3g0473881 Rosa chinensis HOM05D001286 ORTHO05D000440 2.7e-09 67.4 174 29.9
A03p29440 Brassica napus HOM05D001286 ORTHO05D000440 3.5e-09 67.0 185 28.6
CANSAT64G2057 Cannabis sativa HOM05D001286 ORTHO05D000440 3.5e-09 67.0 184 28.3
TPR.G23322 Trifolium pratense HOM05D001286 ORTHO05D000440 3.5e-09 67.0 188 28.7
A01p28080 Brassica napus HOM05D001286 ORTHO05D000440 4.6e-09 66.6 176 31.8
BraA01t02936Z Brassica rapa HOM05D001286 ORTHO05D000440 4.6e-09 66.6 176 31.8
Rhsim13G0207700 Rhododendron simsii HOM05D004351 ORTHO05D005196 4.6e-09 66.6 130 31.5
BcaB04g20176 Brassica carinata HOM05D001286 ORTHO05D000440 6.0e-09 66.2 256 29.3
BcaC09g49525 Brassica carinata HOM05D001286 ORTHO05D000440 6.0e-09 66.2 176 31.8
C01p35560 Brassica napus HOM05D001286 ORTHO05D000440 6.0e-09 66.2 176 31.8
BolC1t03516H Brassica oleracea HOM05D001286 ORTHO05D000440 6.0e-09 66.2 176 31.8
Dinv05663 Davidia involucrata HOM05D008995 ORTHO05D000074 6.0e-09 66.2 189 25.9
Potri.006G212600 Populus trichocarpa HOM05D001286 ORTHO05D000440 6.0e-09 66.2 194 29.9
Potri.016G079300 Populus trichocarpa HOM05D001286 ORTHO05D000440 6.0e-09 66.2 174 29.9
Sabra06G0163600 Salix brachista HOM05D001286 ORTHO05D000440 6.0e-09 66.2 185 29.2
Sabra16G0087200 Salix brachista HOM05D001286 ORTHO05D000440 6.0e-09 66.2 175 29.7
THA.LOC104816392 Tarenaya hassleriana HOM05D001286 ORTHO05D000440 6.0e-09 66.2 183 29.5
Ah.15g090840 Amaranthus hybridus HOM05D001286 ORTHO05D000440 7.8e-09 65.9 187 28.3
BcaB01g01734 Brassica carinata HOM05D001286 ORTHO05D000440 7.8e-09 65.9 253 24.9
Gohir.D04G099000 Gossypium hirsutum HOM05D001286 ORTHO05D000440 7.8e-09 65.9 176 30.1
Gorai.009G401400 Gossypium raimondii HOM05D001286 ORTHO05D000440 7.8e-09 65.9 176 30.1
Sabra16G0085000 Salix brachista HOM05D001286 ORTHO05D000440 7.8e-09 65.9 174 29.9
Haze_19622 Corylus avellana HOM05D001286 ORTHO05D000440 1.0e-08 65.5 212 30.2
Peaxi162Scf00404g00218 Petunia axillaris HOM05D001286 ORTHO05D000440 1.0e-08 65.5 175 27.4
Psat6g080440 Pisum sativum HOM05D001286 ORTHO05D000440 1.3e-08 65.1 179 29.1
AL6G47230 Arabidopsis lyrata HOM05D001286 ORTHO05D000440 1.7e-08 64.7 206 27.7
BcaB05g23813 Brassica carinata HOM05D001286 ORTHO05D000440 1.7e-08 64.7 260 28.5
GSVIVG01001831001 Vitis vinifera HOM05D006742 ORTHO05D008755 2.3e-08 64.3 193 23.3
Psat3g032400 Pisum sativum HOM05D001286 ORTHO05D000440 3.0e-08 63.9 196 26.0
Gohir.D01G195200 Gossypium hirsutum HOM05D001286 ORTHO05D000440 3.9e-08 63.5 174 29.3
Gorai.002G239400 Gossypium raimondii HOM05D001286 ORTHO05D000440 3.9e-08 63.5 174 29.3
MSTRG.26636 Avicennia marina HOM05D001286 ORTHO05D000440 6.6e-08 62.8 174 27.6
A02p25680 Brassica napus HOM05D001286 ORTHO05D000440 6.6e-08 62.8 169 28.4
Ca_09011_v3 Cicer arietinum L. HOM05D001286 ORTHO05D000440 8.7e-08 62.4 128 32.0
Solyc09g009880.3 Solanum lycopersicum HOM05D001286 ORTHO05D000440 8.7e-08 62.4 146 30.1
TAR636G3329 Trochodendron aralioides HOM05D001286 ORTHO05D000440 8.7e-08 62.4 223 28.7
BcaC01g04623 Brassica carinata HOM05D001286 ORTHO05D000440 1.1e-07 62.0 183 29.0
MD14G1023800 Malus domestica HOM05D001286 ORTHO05D000440 1.1e-07 62.0 174 26.4
Sp2g05780 Schrenkiella parvula HOM05D001286 ORTHO05D000440 1.1e-07 62.0 202 30.2
Gohir.A01G205800 Gossypium hirsutum HOM05D001286 ORTHO05D000440 1.5e-07 61.6 174 28.7
PGR142G0506 Punica granatum HOM05D001286 ORTHO05D000440 1.5e-07 61.6 174 27.6
Sp6g05700 Schrenkiella parvula HOM05D001286 ORTHO05D000440 1.5e-07 61.6 213 25.8
TAR376G1075 Trochodendron aralioides HOM05D001286 ORTHO05D000440 1.5e-07 61.6 312 22.4
C03p35590 Brassica napus HOM05D001286 ORTHO05D000440 1.9e-07 61.2 183 29.0
BolC3t15873H Brassica oleracea HOM05D001286 ORTHO05D000440 1.9e-07 61.2 183 29.0
Manes.09G054600 Manihot esculenta HOM05D001286 ORTHO05D000440 1.9e-07 61.2 193 28.0
Atru.chr13.1445 Acer truncatum HOM05D001286 ORTHO05D000440 3.3e-07 60.5 187 28.3
Atru.chr13.1469 Acer truncatum HOM05D001286 ORTHO05D000440 3.3e-07 60.5 187 28.3
AT4G00893 Arabidopsis thaliana HOM05D001286 ORTHO05D000440 3.3e-07 60.5 184 28.8
Aa31LG2G11120 Aethionema arabicum HOM05D001286 ORTHO05D000440 4.3e-07 60.1 181 28.7
AT1G57790 Arabidopsis thaliana HOM05D001286 ORTHO05D000440 4.3e-07 60.1 173 27.7
Sp6g05210 Schrenkiella parvula HOM05D001286 ORTHO05D000440 4.3e-07 60.1 182 26.9
Sopen09g004630 Solanum pennellii HOM05D001286 ORTHO05D000440 4.3e-07 60.1 146 29.5
Peaxi162Scf00003g03511 Petunia axillaris HOM05D001286 ORTHO05D000440 5.6e-07 59.7 131 32.8
SalBow3G0903 Salvia bowleyana HOM05D001286 ORTHO05D000440 5.6e-07 59.7 175 25.7
TPR.G23337 Trifolium pratense HOM05D001286 ORTHO05D000440 5.6e-07 59.7 132 29.5
Aqoxy7G03842 Aquilegia oxysepala HOM05D000151 ORTHO05D000074 7.3e-07 59.3 134 31.3
AL6G44750 Arabidopsis lyrata HOM05D001286 ORTHO05D000440 7.3e-07 59.3 152 29.6
Migut.J01025 Erythranthe guttata HOM05D001286 ORTHO05D000440 7.3e-07 59.3 174 26.4
Thhalv10029466m.g Eutrema salsugineum HOM05D001286 ORTHO05D000440 7.3e-07 59.3 260 26.9
Medtr7g104790 Medicago truncatula HOM05D001286 ORTHO05D000440 7.3e-07 59.3 190 27.4
CAN.G397.56 Capsicum annuum HOM05D001286 ORTHO05D000440 9.6e-07 58.9 171 28.7
CARHR253850 Cardamine hirsuta HOM05D001286 ORTHO05D000440 9.6e-07 58.9 181 28.7
Sp6g05200 Schrenkiella parvula HOM05D001286 ORTHO05D000440 9.6e-07 58.9 198 26.3
AL2G18850 Arabidopsis lyrata HOM05D001286 ORTHO05D000440 1.3e-06 58.5 173 30.1
Ciclev10010623m.g Citrus clementina HOM05D009259 ORTHO05D000440 1.3e-06 58.5 179 26.3
A09p26950 Brassica napus HOM05D001286 ORTHO05D000440 1.6e-06 58.2 148 29.7
BraA09t38265Z Brassica rapa HOM05D001286 ORTHO05D000440 1.6e-06 58.2 148 29.7
COL.COLO4_29554 Corchorus olitorius HOM05D008995 ORTHO05D000074 2.1e-06 57.8 206 25.2
PSO210G6800 Papaver somniferum HOM05D001286 ORTHO05D000440 2.1e-06 57.8 174 28.2
TWI56G0047 Tripterygium wilfordii HOM05D000151 ORTHO05D000074 2.1e-06 57.8 129 28.7
Peaxi162Scf00003g03416 Petunia axillaris HOM05D001286 ORTHO05D000440 2.8e-06 57.4 131 32.1
Thecc.05G212700 Theobroma cacao HOM05D001286 ORTHO05D000440 2.8e-06 57.4 187 26.2
TAR628G1131 Trochodendron aralioides HOM05D001286 ORTHO05D000440 2.8e-06 57.4 188 23.9
BcaB01g02679 Brassica carinata HOM05D001286 ORTHO05D000440 3.6e-06 57.0 314 24.5
BraA10t42745Z Brassica rapa HOM05D001286 ORTHO05D000440 3.6e-06 57.0 126 34.9
Thhalv10023551m.g Eutrema salsugineum HOM05D001286 ORTHO05D000440 3.6e-06 57.0 192 28.6
Nn1g05876 Nelumbo nucifera HOM05D001286 ORTHO05D000440 3.6e-06 57.0 183 26.8
PGSC0003DMG400008951 Solanum tuberosum HOM05D001286 ORTHO05D000440 4.8e-06 56.6 145 29.7
SGA_v2.0_scaffold31G12907 Striga asiatica HOM05D001286 ORTHO05D000440 6.2e-06 56.2 140 30.7
MBI11_g05443_MAGBIO Magnolia biondii HOM05D000151 ORTHO05D000074 8.1e-06 55.8 126 28.6
MBI19_g33448_MAGBIO Magnolia biondii HOM05D000151 ORTHO05D000074 8.1e-06 55.8 126 28.6


User provided reference genes

Program Settings