Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim05G0016600 Rhododendron simsii HOM05D004042 ORTHO05D004552 0.0e+00 1251.5 628 100.0
vmacro17139 Vaccinium macrocarpon HOM05D004042 ORTHO05D004552 1.2e-211 740.3 702 62.3
Actinidia25240 Actinidia chinensis HOM05D004042 ORTHO05D004552 2.8e-184 649.4 557 66.8
Haze_25938 Corylus avellana HOM05D004042 ORTHO05D004552 2.1e-176 623.2 628 57.6
MSTRG.19492 Avicennia marina HOM05D004042 ORTHO05D004552 9.8e-174 614.4 592 58.4
GSVIVG01015174001 Vitis vinifera HOM05D004042 ORTHO05D004552 9.8e-174 614.4 544 61.0
Cfa003057 Carpinus fangiana HOM05D004042 ORTHO05D004552 1.3e-173 614.0 628 56.5
Ciclev10008048m.g Citrus clementina HOM05D004042 ORTHO05D004552 3.7e-173 612.5 618 56.5
Oeu054835.1 Olea europaea HOM05D004042 ORTHO05D004552 1.1e-172 610.9 629 57.4
Dinv42339 Davidia involucrata HOM05D004042 ORTHO05D004552 1.9e-172 610.1 630 58.3
Atru.chr7.1627 Acer truncatum HOM05D004042 ORTHO05D004552 5.4e-172 608.6 608 57.9
CiPaw.03G212500 Carya illinoinensis HOM05D004042 ORTHO05D004552 5.4e-172 608.6 631 55.2
TAR624G0704 Trochodendron aralioides HOM05D004042 ORTHO05D004552 5.4e-172 608.6 630 56.8
Migut.J00573 Erythranthe guttata HOM05D004042 ORTHO05D004552 2.1e-171 606.7 650 55.4
Oeu051295.1 Olea europaea HOM05D004042 ORTHO05D004552 2.1e-171 606.7 626 57.7
Prupe.7G206100 Prunus persica HOM05D004042 ORTHO05D004552 7.8e-171 604.7 644 55.9
Nitab4.5_0009216g0010 Nicotiana tabacum HOM05D004042 ORTHO05D004552 2.1e-168 596.7 600 57.8
MD02G1082600 Malus domestica HOM05D004042 ORTHO05D004552 4.7e-168 595.5 626 55.9
ClCG11G001680 Citrullus lanatus HOM05D004042 ORTHO05D004552 8.1e-168 594.7 629 55.5
MELO3C004632.2 Cucumis melo HOM05D004042 ORTHO05D004552 1.4e-167 594.0 628 54.9
QL02p062121 Quercus lobata HOM05D004042 ORTHO05D004552 1.8e-167 593.6 649 55.5
Potri.018G066100 Populus trichocarpa HOM05D004042 ORTHO05D004552 2.3e-167 593.2 521 61.6
PSO063G3240 Papaver somniferum HOM05D004042 ORTHO05D004552 3.1e-167 592.8 531 60.5
CsaV3_2G001380 Cucumis sativus L. HOM05D004042 ORTHO05D004552 5.2e-167 592.0 628 54.9
Cc06_g11620 Coffea canephora HOM05D004042 ORTHO05D004552 2.0e-166 590.1 519 61.7
Glyma.13G106100 Glycine max HOM05D004042 ORTHO05D004552 1.3e-165 587.4 558 58.6
MD15G1210700 Malus domestica HOM05D004042 ORTHO05D004552 3.7e-165 585.9 628 55.1
Lj7C679G4 Lonicera japonica HOM05D004042 ORTHO05D004552 4.9e-165 585.5 533 64.5
Lj4g0002498 Lotus japonicus HOM05D004042 ORTHO05D004552 1.1e-164 584.3 561 58.6
Psat7g044040 Pisum sativum HOM05D004042 ORTHO05D004552 2.4e-164 583.2 521 60.8
PGR142G2341 Punica granatum HOM05D004042 ORTHO05D004552 3.2e-164 582.8 634 54.6
Sed0015499 Sechium edule HOM05D004042 ORTHO05D004552 3.2e-164 582.8 629 54.4
Sc08g0008580 Simmondsia chinensis HOM05D004042 ORTHO05D004552 3.2e-164 582.8 527 60.2
CiPaw.04G147900 Carya illinoinensis HOM05D004042 ORTHO05D004552 4.1e-164 582.4 632 54.9
PSO832G2139 Papaver somniferum HOM05D004042 ORTHO05D004552 4.1e-164 582.4 565 57.3
Thecc.09G085400 Theobroma cacao HOM05D004042 ORTHO05D004552 5.4e-164 582.0 569 58.0
Glyma.17G053300 Glycine max HOM05D004042 ORTHO05D004552 7.1e-164 581.6 548 59.3
Dinv36786 Davidia involucrata HOM05D004042 ORTHO05D004552 3.5e-163 579.3 505 64.6
Phvul.003G134900 Phaseolus vulgaris HOM05D004042 ORTHO05D004552 4.6e-163 578.9 521 60.8
HanXRQChr12g0354671 Helianthus annuus HOM05D004042 ORTHO05D004552 6.0e-163 578.6 552 58.3
VMungo1215G0315 Vigna mungo HOM05D004042 ORTHO05D004552 1.3e-162 577.4 627 54.1
Aqoxy7G01162 Aquilegia oxysepala HOM05D004042 ORTHO05D004552 1.7e-162 577.0 626 55.0
CAN.G57.12 Capsicum annuum HOM05D004042 ORTHO05D004552 3.9e-162 575.9 541 58.8
Solyc07g040740.3 Solanum lycopersicum HOM05D004042 ORTHO05D004552 3.9e-162 575.9 617 53.6
TPR.G9438 Trifolium pratense HOM05D004042 ORTHO05D004552 3.9e-162 575.9 564 57.8
Gorai.001G013100 Gossypium raimondii HOM05D004042 ORTHO05D004552 6.6e-162 575.1 606 55.1
HanXRQChr03g0060291 Helianthus annuus HOM05D004042 ORTHO05D004552 8.6e-162 574.7 547 57.6
Gohir.D07G012400 Gossypium hirsutum HOM05D004042 ORTHO05D004552 1.1e-161 574.3 606 55.0
CANSAT56G0725 Cannabis sativa HOM05D004042 ORTHO05D004552 1.5e-161 573.9 640 53.8
HanXRQChr10g0319461 Helianthus annuus HOM05D004042 ORTHO05D004552 1.5e-161 573.9 630 53.0
Sopen07g019480 Solanum pennellii HOM05D004042 ORTHO05D004552 4.3e-161 572.4 617 53.5
ECA234G2403 Erigeron canadensis HOM05D004042 ORTHO05D004552 7.3e-161 571.6 518 59.8
Nn6g35535 Nelumbo nucifera HOM05D004042 ORTHO05D004552 7.3e-161 571.6 624 53.5
Medtr4g125980 Medicago truncatula HOM05D004042 ORTHO05D004552 1.2e-160 570.9 573 56.2
SGA_v2.0_scaffold91G28060 Striga asiatica HOM05D004042 ORTHO05D004552 1.6e-160 570.5 641 54.9
PGSC0003DMG400000274 Solanum tuberosum HOM05D004042 ORTHO05D004552 2.1e-160 570.1 540 59.3
Gohir.A07G012600 Gossypium hirsutum HOM05D004042 ORTHO05D004552 4.7e-160 568.9 606 54.6
Solyc12g008970.3 Solanum lycopersicum HOM05D004042 ORTHO05D004552 1.4e-159 567.4 540 58.9
TWI32G1194 Tripterygium wilfordii HOM05D004042 ORTHO05D004552 1.4e-159 567.4 620 54.4
Glyma.09G065300 Glycine max HOM05D004042 ORTHO05D004552 2.4e-159 566.6 620 54.0
Sopen12g003900 Solanum pennellii HOM05D004042 ORTHO05D004552 5.2e-159 565.5 559 57.6
TWI63G1034 Tripterygium wilfordii HOM05D004042 ORTHO05D004552 8.9e-159 564.7 511 62.4
RcHm_v2.0_Chr2g0093781 Rosa chinensis HOM05D004042 ORTHO05D004552 1.2e-158 564.3 629 53.6
THA.LOC104814629 Tarenaya hassleriana HOM05D004042 ORTHO05D004552 1.5e-158 563.9 578 56.7
Phvul.009G230700 Phaseolus vulgaris HOM05D004042 ORTHO05D004552 2.0e-158 563.5 631 52.9
DCAR_028272 Daucus carota HOM05D004042 ORTHO05D004552 7.6e-158 561.6 565 54.9
Manes.16G100000 Manihot esculenta HOM05D004042 ORTHO05D004552 1.3e-157 560.8 536 58.2
Psat1g132200 Pisum sativum HOM05D004042 ORTHO05D004552 3.8e-157 559.3 624 53.8
TPR.G29533 Trifolium pratense HOM05D004042 ORTHO05D004552 4.9e-157 558.9 602 54.5
Medtr2g039940 Medicago truncatula HOM05D004042 ORTHO05D004552 8.4e-157 558.1 607 53.5
PSO210G1704 Papaver somniferum HOM05D004042 ORTHO05D004552 1.1e-156 557.8 554 58.5
Lj6g0011849 Lotus japonicus HOM05D004042 ORTHO05D004552 1.9e-156 557.0 567 55.4
PSO210G6497 Papaver somniferum HOM05D004042 ORTHO05D004552 5.4e-156 555.4 547 58.0
ATR0789G051 Amborella trichopoda HOM05D004042 ORTHO05D004552 1.2e-155 554.3 572 54.0
SalBow6G0873 Salvia bowleyana HOM05D004042 ORTHO05D004552 2.1e-155 553.5 640 53.9
Lalb_Chr13g0299591 Lupinus albus HOM05D004042 ORTHO05D004552 2.7e-155 553.1 563 54.9
FAN28G1686 Fragaria x ananassa HOM05D004042 ORTHO05D004552 3.5e-155 552.7 518 58.5
AL3G48800 Arabidopsis lyrata HOM05D004042 ORTHO05D004552 6.0e-155 552.0 555 56.2
FAN26G3195 Fragaria x ananassa HOM05D004042 ORTHO05D004552 6.0e-155 552.0 531 57.8
AT2G19450 Arabidopsis thaliana HOM05D004042 ORTHO05D004552 1.3e-154 550.8 517 58.2
FAN26G0253 Fragaria x ananassa HOM05D004042 ORTHO05D004552 1.3e-154 550.8 531 57.8
FvH4_1g07910 Fragaria vesca HOM05D004042 ORTHO05D004552 5.1e-154 548.9 626 52.9
BcaC04g22852 Brassica carinata HOM05D004042 ORTHO05D004552 6.6e-154 548.5 630 52.2
BolC9t54364H Brassica oleracea HOM05D004042 ORTHO05D004552 6.6e-154 548.5 630 52.2
Lalb_Chr08g0232371 Lupinus albus HOM05D004042 ORTHO05D004552 6.6e-154 548.5 627 52.2
C07p02710 Brassica napus HOM05D004042 ORTHO05D004552 1.5e-153 547.4 636 51.6
BolC7t40671H Brassica oleracea HOM05D004042 ORTHO05D004552 1.5e-153 547.4 636 51.6
Peaxi162Scf00498g00448 Petunia axillaris HOM05D004042 ORTHO05D004552 2.5e-153 546.6 523 58.5
A07p01320 Brassica napus HOM05D004042 ORTHO05D004552 3.3e-153 546.2 636 51.3
BraA07t27923Z Brassica rapa HOM05D004042 ORTHO05D004552 3.3e-153 546.2 636 51.3
BcaC06g36576 Brassica carinata HOM05D004042 ORTHO05D004552 1.6e-152 543.9 567 54.9
Nitab4.5_0002824g0090 Nicotiana tabacum HOM05D004042 ORTHO05D004552 2.8e-152 543.1 458 64.6
C09p14580 Brassica napus HOM05D004042 ORTHO05D004552 3.6e-152 542.7 566 54.9
BraA09t36880Z Brassica rapa HOM05D004042 ORTHO05D004552 3.6e-152 542.7 566 54.9
Os06g0563900 Oryza sativa ssp. japonica HOM05D004042 ORTHO05D004552 3.6e-152 542.7 515 57.1
CARHR109890 Cardamine hirsuta HOM05D004042 ORTHO05D004552 8.1e-152 541.6 643 52.6
BcaB07g31608 Brassica carinata HOM05D004042 ORTHO05D004552 1.1e-151 541.2 629 51.8
HPP92_005224 Vanilla planifolia HOM05D004042 ORTHO05D004552 1.1e-151 541.2 618 51.9
Potri.006G147600 Populus trichocarpa HOM05D004042 ORTHO05D004552 3.1e-151 539.7 469 61.6
A09p12360 Brassica napus HOM05D004042 ORTHO05D004552 4.0e-151 539.3 631 51.7
Zm00001eb277490 Zea mays HOM05D004042 ORTHO05D004552 4.0e-151 539.3 519 56.3
Sp3g32820 Schrenkiella parvula HOM05D004042 ORTHO05D004552 5.3e-151 538.9 636 51.1
Duzib168G0739 Durio zibethinus HOM05D004042 ORTHO05D004552 6.9e-151 538.5 562 55.2
Carub.0003s3373 Capsella rubella HOM05D004042 ORTHO05D004552 9.0e-151 538.1 628 52.1
Thhalv10022645m.g Eutrema salsugineum HOM05D004042 ORTHO05D004552 1.5e-150 537.3 603 51.6
BcaB03g16730 Brassica carinata HOM05D004042 ORTHO05D004552 2.6e-150 536.6 634 50.9
CDE05G1317 Ceratophyllum demersum HOM05D004042 ORTHO05D004552 3.4e-150 536.2 612 49.5
Lsat_1_v5_gn_5_143061 Lactuca sativa HOM05D004042 ORTHO05D004552 9.9e-150 534.6 628 52.1
arahy.Tifrunner.gnm1.ann1.MYU01D Arachis hypogaea HOM05D004042 ORTHO05D004552 1.3e-149 534.3 606 52.5
FAN19G1831 Fragaria x ananassa HOM05D004042 ORTHO05D004552 2.2e-149 533.5 635 51.8
FAN23G0463 Fragaria x ananassa HOM05D004042 ORTHO05D004552 4.2e-148 529.3 620 52.4
Eucgr.C03419 Eucalyptus grandis HOM05D004042 ORTHO05D004552 1.6e-147 527.3 312 82.1
Oeu032802.1 Olea europaea HOM05D004042 ORTHO05D004552 2.7e-147 526.6 620 50.8
TAR636G2477 Trochodendron aralioides HOM05D004042 ORTHO05D004552 2.7e-147 526.6 545 56.5
Nitab4.5_0001519g0080 Nicotiana tabacum HOM05D004042 ORTHO05D004552 2.5e-145 520.0 588 53.9
Sabra18G0058600 Salix brachista HOM05D004042 ORTHO05D004552 4.0e-143 512.7 343 76.7
Aa31LG8G16450 Aethionema arabicum HOM05D004042 ORTHO05D004552 1.2e-142 511.1 602 51.2
Ca_21290_v3 Cicer arietinum L. HOM05D004042 ORTHO05D004552 1.7e-141 507.3 360 72.5
AUR62029034 Chenopodium quinoa HOM05D004042 ORTHO05D004552 5.4e-140 502.3 371 70.4
Manes.03G036000 Manihot esculenta HOM05D004042 ORTHO05D004552 7.1e-140 501.9 405 65.7
Sabra06G0116600 Salix brachista HOM05D004042 ORTHO05D004552 1.2e-139 501.1 358 71.5
arahy.Tifrunner.gnm1.ann1.MZM9C8 Arachis hypogaea HOM05D004042 ORTHO05D004552 3.5e-139 499.6 618 50.0
Nitab4.5_0002642g0100 Nicotiana tabacum HOM05D004042 ORTHO05D004552 6.0e-139 498.8 436 62.2
Os05g0196800 Oryza sativa ssp. japonica HOM05D004042 ORTHO05D004552 1.1e-137 494.6 516 52.1
Hund25994 Selenicereus undatus HOM05D004042 ORTHO05D004552 7.4e-137 491.9 455 60.7
unitig_8.g4318 Utricularia gibba HOM05D004042 ORTHO05D004552 1.6e-136 490.7 625 49.0
CAN.G1583.6 Capsicum annuum HOM05D004042 ORTHO05D004552 2.8e-136 490.0 465 57.8
Ca_13125_v3 Cicer arietinum L. HOM05D004042 ORTHO05D004552 7.6e-134 481.9 429 63.2
HPP92_003981 Vanilla planifolia HOM05D004042 ORTHO05D004552 1.2e-131 474.6 506 53.8
CSS0045629 Camellia sinensis var. sinensis HOM05D004042 ORTHO05D004552 1.3e-130 471.1 650 47.8
Lalb_Chr11g0074521 Lupinus albus HOM05D004042 ORTHO05D004552 1.1e-129 468.0 417 60.4
EL10Ac8g19178 Beta vulgaris HOM05D004042 ORTHO05D004552 8.2e-128 461.8 631 47.9
Peaxi162Scf00494g00077 Petunia axillaris HOM05D004042 ORTHO05D004552 1.1e-127 461.5 539 51.4
Pp3c15_23830 Physcomitrium patens HOM05D004042 ORTHO05D004552 4.0e-127 459.5 525 49.3
Mapoly0012s0121 Marchantia polymorpha HOM05D004042 ORTHO05D004552 5.3e-127 459.1 604 45.0
SMO356G0470 Selaginella moellendorffii HOM05D004042 ORTHO05D004552 4.5e-126 456.1 514 49.8
AagrBONN_evm.TU.Sc2ySwM_344.3248 Anthoceros agrestis HOM05D004042 ORTHO05D004552 1.7e-125 454.1 523 48.9
arahy.Tifrunner.gnm1.ann1.W5L64F Arachis hypogaea HOM05D004042 ORTHO05D004552 2.2e-125 453.8 626 45.7
AagrBONN_evm.TU.Sc2ySwM_117.1233 Anthoceros agrestis HOM05D004042 ORTHO05D004552 4.9e-125 452.6 519 49.1
VMungo1309G0638 Vigna mungo HOM05D004042 ORTHO05D004552 1.5e-121 441.0 400 63.2
arahy.Tifrunner.gnm1.ann1.5W0QMQ Arachis hypogaea HOM05D004042 ORTHO05D004552 2.8e-120 436.8 616 45.1
CDE05G1467 Ceratophyllum demersum HOM05D004042 ORTHO05D004552 2.8e-120 436.8 385 61.0
Zm00001eb284200 Zea mays HOM05D004042 ORTHO05D004552 6.3e-120 435.6 307 70.4
Sc18g0002260 Simmondsia chinensis HOM05D004042 ORTHO05D004552 1.4e-114 417.9 293 72.7
Pp3c9_24440 Physcomitrium patens HOM05D004042 ORTHO05D004552 3.0e-114 416.8 428 54.7
DCAR_011961 Daucus carota HOM05D004042 ORTHO05D004552 6.7e-114 415.6 465 49.9
Hund06663 Selenicereus undatus HOM05D004042 ORTHO05D004552 1.1e-108 398.3 449 52.6
AagrBONN_evm.TU.Sc2ySwM_344.1721 Anthoceros agrestis HOM05D004042 ORTHO05D004552 6.1e-107 392.5 308 64.3
Hma1.2p1_0672F.1_g201026 Hydrangea macrophylla HOM05D004042 ORTHO05D004552 6.1e-83 312.8 182 83.5
PGSC0003DMG400032788 Solanum tuberosum HOM05D004042 ORTHO05D004552 1.6e-78 298.1 226 69.9
AUR62033935 Chenopodium quinoa HOM05D004042 ORTHO05D004552 8.6e-77 292.4 296 58.8
Lj4C291G3 Lonicera japonica HOM05D004042 ORTHO05D004552 8.3e-72 275.8 308 56.2
COL.COLO4_18176 Corchorus olitorius HOM05D004042 ORTHO05D004552 3.9e-69 266.9 207 71.0
Hma1.2p1_0672F.1_g201023 Hydrangea macrophylla HOM05D004042 ORTHO05D004552 3.1e-66 257.3 155 81.3
PRCOL_00002371 Prasinoderma coloniale HOM05D004042 ORTHO05D004552 9.2e-63 245.7 531 33.5
Cpa.g.sc737.3 Carica papaya HOM05D004042 ORTHO05D004552 1.1e-55 222.2 212 60.8
Haze_27058 Corylus avellana HOM05D004042 ORTHO05D004552 1.2e-38 165.6 403 30.5
SMO361G0462 Selaginella moellendorffii HOM05D004042 ORTHO05D004552 1.7e-32 145.2 290 34.1
Cpa.g.sc737.2 Carica papaya HOM05D004042 ORTHO05D004552 2.1e-30 138.3 243 37.9
FAN28G2747 Fragaria x ananassa HOM05D004042 ORTHO05D004552 3.9e-29 134.0 518 28.0
Cre01.g045903 Chlamydomonas reinhardtii HOM05D004042 ORTHO05D004552 1.5e-28 132.1 257 33.9
Cfa021676 Carpinus fangiana HOM05D004042 ORTHO05D004552 4.9e-24 117.1 584 23.1
PGSC0003DMG400032789 Solanum tuberosum HOM05D004042 ORTHO05D004552 5.6e-20 103.6 142 42.3
PSO765G0232 Papaver somniferum HOM05D004042 ORTHO05D004552 1.1e-18 99.4 125 50.4
Peaxi162Scf00126g01028 Petunia axillaris HOM05D004042 ORTHO05D004552 1.4e-18 99.0 49 87.8
AUR62029035 Chenopodium quinoa HOM05D004042 ORTHO05D004552 3.0e-13 81.3 78 56.4
SEGI_28032 Sequoiadendron giganteum HOM05D004042 ORTHO05D004552 2.4e-10 71.6 63 54.0
Sabra18G0058500 Salix brachista HOM05D004042 ORTHO05D004552 4.5e-09 67.4 37 78.4
Cfa025900 Carpinus fangiana HOM05D004042 ORTHO05D123407 5.8e-09 67.0 146 30.8
PSO339G6631 Papaver somniferum HOM05D002947 ORTHO05D037275 2.9e-08 64.7 45 68.9
PSO266G0038 Papaver somniferum HOM05D002947 ORTHO05D037275 1.4e-07 62.4 41 73.2
Lalb_Chr11g0074531 Lupinus albus HOM05D004042 ORTHO05D004552 1.2e-06 59.3 30 83.3
Cfa024924 Carpinus fangiana HOM05D004042 ORTHO05D004552 2.7e-06 58.2 160 28.8


User provided reference genes

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