Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim05G0013300 Rhododendron simsii HOM05D003970 ORTHO05D004615 2.5e-201 705.3 373 100.0
vmacro17169 Vaccinium macrocarpon HOM05D003970 ORTHO05D004615 8.7e-186 653.7 373 93.3
Actinidia25226 Actinidia chinensis HOM05D003970 ORTHO05D004615 2.2e-165 585.9 370 84.6
Actinidia29916 Actinidia chinensis HOM05D003970 ORTHO05D004615 4.2e-164 581.6 366 80.6
Actinidia39693 Actinidia chinensis HOM05D003970 ORTHO05D004615 4.2e-164 581.6 381 82.2
Dinv36802 Davidia involucrata HOM05D003970 ORTHO05D004615 5.5e-164 581.3 370 83.0
CSS0040908 Camellia sinensis var. sinensis HOM05D003970 ORTHO05D004615 7.2e-164 580.9 381 81.4
Lj7A681T64 Lonicera japonica HOM05D003970 ORTHO05D004615 2.3e-162 575.9 369 81.8
Oeu035943.1 Olea europaea HOM05D003970 ORTHO05D004615 1.9e-161 572.8 369 80.8
CiPaw.04G146900 Carya illinoinensis HOM05D003970 ORTHO05D004615 6.9e-159 564.3 366 81.4
TWI32G0099 Tripterygium wilfordii HOM05D003970 ORTHO05D004615 1.2e-158 563.5 370 80.0
MSTRG.26453 Avicennia marina HOM05D003970 ORTHO05D004615 2.0e-158 562.8 364 81.9
TAR623G1298 Trochodendron aralioides HOM05D003970 ORTHO05D004615 2.0e-158 562.8 370 76.5
Prupe.7G204000 Prunus persica HOM05D003970 ORTHO05D004615 2.6e-158 562.4 366 81.1
SalBow1G5979 Salvia bowleyana HOM05D003970 ORTHO05D004615 1.3e-157 560.1 360 81.4
Hma1.2p1_0672F.1_g200850 Hydrangea macrophylla HOM05D003970 ORTHO05D004615 1.7e-157 559.7 364 80.8
TAR636G0030 Trochodendron aralioides HOM05D003970 ORTHO05D004615 2.2e-157 559.3 370 75.9
SGA_v2.0_scaffold23G10060 Striga asiatica HOM05D003970 ORTHO05D004615 8.5e-157 557.4 357 82.9
CANSAT56G0340 Cannabis sativa HOM05D003970 ORTHO05D004615 1.4e-156 556.6 370 78.6
DCAR_028283 Daucus carota HOM05D003970 ORTHO05D004615 3.2e-156 555.4 369 79.7
MD15G1212900 Malus domestica HOM05D003970 ORTHO05D004615 4.2e-156 555.1 367 80.1
QL02p061312 Quercus lobata HOM05D003970 ORTHO05D004615 4.2e-156 555.1 368 79.9
QL02p061443 Quercus lobata HOM05D003970 ORTHO05D004615 4.2e-156 555.1 368 79.9
SGA_v2.0_scaffold21G09454 Striga asiatica HOM05D003970 ORTHO05D004615 7.2e-156 554.3 396 75.8
CsaV3_1G040740 Cucumis sativus L. HOM05D003970 ORTHO05D004615 1.2e-155 553.5 364 77.7
TWI34G1861 Tripterygium wilfordii HOM05D003970 ORTHO05D004615 1.2e-155 553.5 370 78.9
Duzib168G1513 Durio zibethinus HOM05D003970 ORTHO05D004615 1.6e-155 553.1 375 77.9
FAN26G0968 Fragaria x ananassa HOM05D003970 ORTHO05D004615 4.6e-155 551.6 373 79.6
DCAR_024721 Daucus carota HOM05D003970 ORTHO05D004615 6.1e-155 551.2 374 77.5
RcHm_v2.0_Chr2g0094171 Rosa chinensis HOM05D003970 ORTHO05D004615 7.9e-155 550.8 366 80.1
Migut.J00961 Erythranthe guttata HOM05D003970 ORTHO05D004615 1.0e-154 550.4 371 74.4
FAN28G0363 Fragaria x ananassa HOM05D003970 ORTHO05D004615 1.0e-154 550.4 373 79.4
MD02G1085700 Malus domestica HOM05D003970 ORTHO05D004615 1.0e-154 550.4 366 79.8
Migut.L01537 Erythranthe guttata HOM05D003970 ORTHO05D004615 1.4e-154 550.1 369 78.9
FAN23G0579 Fragaria x ananassa HOM05D003970 ORTHO05D004615 8.8e-154 547.4 373 79.4
Gohir.D13G197900 Gossypium hirsutum HOM05D003970 ORTHO05D004615 8.8e-154 547.4 372 77.2
Gorai.013G226600 Gossypium raimondii HOM05D003970 ORTHO05D004615 8.8e-154 547.4 372 77.2
FAN26G2539 Fragaria x ananassa HOM05D003970 ORTHO05D004615 3.3e-153 545.4 361 80.9
Gohir.A13G192500 Gossypium hirsutum HOM05D003970 ORTHO05D004615 3.3e-153 545.4 372 76.9
Lsat_1_v5_gn_5_142140 Lactuca sativa HOM05D003970 ORTHO05D004615 4.4e-153 545.0 378 74.6
Eucgr.C03403 Eucalyptus grandis HOM05D003970 ORTHO05D004615 7.4e-153 544.3 374 73.0
ECA234G3560 Erigeron canadensis HOM05D003970 ORTHO05D004615 9.7e-153 543.9 363 76.0
FvH4_1g08120 Fragaria vesca HOM05D003970 ORTHO05D004615 1.3e-152 543.5 373 78.3
FAN19G1405 Fragaria x ananassa HOM05D003970 ORTHO05D004615 1.3e-152 543.5 373 78.3
Thecc.09G082200 Theobroma cacao HOM05D003970 ORTHO05D004615 1.7e-152 543.1 372 76.9
Aqoxy7G03992 Aquilegia oxysepala HOM05D003970 ORTHO05D004615 3.7e-152 542.0 370 75.7
MELO3C015502.2 Cucumis melo HOM05D003970 ORTHO05D004615 6.3e-152 541.2 364 76.1
Lj4g0010970 Lotus japonicus HOM05D003970 ORTHO05D004615 6.3e-152 541.2 369 75.6
Nitab4.5_0006849g0020 Nicotiana tabacum HOM05D003970 ORTHO05D004615 6.3e-152 541.2 371 73.3
PSO210G0608 Papaver somniferum HOM05D003970 ORTHO05D004615 6.3e-152 541.2 374 77.3
PSO210G0448 Papaver somniferum HOM05D003970 ORTHO05D004615 1.4e-151 540.0 354 79.4
HanXRQChr10g0319561 Helianthus annuus HOM05D003970 ORTHO05D004615 5.3e-151 538.1 365 74.5
Lj4A288T21 Lonicera japonica HOM05D003970 ORTHO05D004615 6.9e-151 537.7 341 79.8
Cc06_g11850 Coffea canephora HOM05D003970 ORTHO05D004615 9.1e-151 537.3 358 76.8
Peaxi162Scf00724g00210 Petunia axillaris HOM05D003970 ORTHO05D004615 1.2e-150 537.0 366 73.0
Nn6g35566 Nelumbo nucifera HOM05D003970 ORTHO05D004615 2.0e-150 536.2 358 78.5
Sc18g0002350 Simmondsia chinensis HOM05D003970 ORTHO05D004615 2.0e-150 536.2 368 73.4
Ciclev10020772m.g Citrus clementina HOM05D003970 ORTHO05D004615 2.6e-150 535.8 363 78.0
Ciclev10010674m.g Citrus clementina HOM05D003970 ORTHO05D004615 5.9e-150 534.6 376 76.9
Atru.chr7.1654 Acer truncatum HOM05D003970 ORTHO05D004615 1.0e-149 533.9 369 76.2
Cfa003038 Carpinus fangiana HOM05D003970 ORTHO05D004615 1.0e-149 533.9 369 77.5
Manes.16G098400 Manihot esculenta HOM05D003970 ORTHO05D004615 1.0e-149 533.9 373 76.1
vmacro06308 Vaccinium macrocarpon HOM05D003970 ORTHO05D004615 1.7e-149 533.1 343 79.9
CAN.G33.23 Capsicum annuum HOM05D003970 ORTHO05D004615 8.5e-149 530.8 371 71.7
THA.LOC104808900 Tarenaya hassleriana HOM05D003970 ORTHO05D004615 8.5e-149 530.8 353 78.8
Solyc07g041160.3 Solanum lycopersicum HOM05D003970 ORTHO05D004615 1.9e-148 529.6 353 74.8
Nitab4.5_0001488g0140 Nicotiana tabacum HOM05D003970 ORTHO05D004615 2.5e-148 529.3 370 71.6
Sopen07g020420 Solanum pennellii HOM05D003970 ORTHO05D004615 2.5e-148 529.3 353 74.5
Glyma.13G107500 Glycine max HOM05D003970 ORTHO05D004615 3.2e-148 528.9 341 79.2
Glyma.17G051800 Glycine max HOM05D003970 ORTHO05D004615 3.2e-148 528.9 341 78.9
PGSC0003DMG400020950 Solanum tuberosum HOM05D003970 ORTHO05D004615 5.5e-148 528.1 371 72.0
Potri.006G145600 Populus trichocarpa HOM05D003970 ORTHO05D004615 9.4e-148 527.3 374 73.3
AL7G44300 Arabidopsis lyrata HOM05D003970 ORTHO05D004615 1.2e-147 526.9 371 74.9
arahy.Tifrunner.gnm1.ann1.B9Q4RC Arachis hypogaea HOM05D003970 ORTHO05D004615 1.2e-147 526.9 344 76.7
VMungo1215G1067 Vigna mungo HOM05D003970 ORTHO05D004615 1.6e-147 526.6 352 76.1
arahy.Tifrunner.gnm1.ann1.7IK41Y Arachis hypogaea HOM05D003970 ORTHO05D004615 2.1e-147 526.2 344 76.5
Potri.018G051100 Populus trichocarpa HOM05D003970 ORTHO05D004615 2.1e-147 526.2 374 75.9
Thhalv10003454m.g Eutrema salsugineum HOM05D003970 ORTHO05D004615 2.7e-147 525.8 361 77.6
Phvul.003G133400 Phaseolus vulgaris HOM05D003970 ORTHO05D004615 3.6e-147 525.4 356 76.1
CDE05G2698 Ceratophyllum demersum HOM05D003970 ORTHO05D004615 1.4e-146 523.5 352 74.7
MBI05_g23628_MAGBIO Magnolia biondii HOM05D003970 ORTHO05D004615 1.8e-146 523.1 344 79.1
Sp7g06850 Schrenkiella parvula HOM05D003970 ORTHO05D004615 1.8e-146 523.1 353 78.5
AUR62029007 Chenopodium quinoa HOM05D003970 ORTHO05D004615 5.2e-146 521.5 370 71.6
A04p09740 Brassica napus HOM05D003970 ORTHO05D004615 6.7e-146 521.2 361 77.3
BraA04t16636Z Brassica rapa HOM05D003970 ORTHO05D004615 6.7e-146 521.2 361 77.3
Lalb_Chr08g0232451 Lupinus albus HOM05D003970 ORTHO05D004615 1.5e-145 520.0 365 71.5
Carub.0007s3126 Capsella rubella HOM05D003970 ORTHO05D004615 3.3e-145 518.8 374 74.3
Gohir.D06G073400 Gossypium hirsutum HOM05D003970 ORTHO05D004615 3.3e-145 518.8 370 74.3
AT5G35460 Arabidopsis thaliana HOM05D003970 ORTHO05D004615 4.4e-145 518.5 355 77.5
CARHR217480 Cardamine hirsuta HOM05D003970 ORTHO05D004615 4.4e-145 518.5 373 74.0
ClCG03G015300 Citrullus lanatus HOM05D003970 ORTHO05D004615 4.4e-145 518.5 457 62.8
Gorai.010G085700 Gossypium raimondii HOM05D003970 ORTHO05D004615 4.4e-145 518.5 370 74.3
Sed0004197 Sechium edule HOM05D003970 ORTHO05D004615 5.7e-145 518.1 367 73.3
PGR044G0734 Punica granatum HOM05D003970 ORTHO05D004615 9.7e-145 517.3 312 80.4
AUR62025170 Chenopodium quinoa HOM05D003970 ORTHO05D004615 1.3e-144 516.9 364 72.3
Gohir.A06G074600 Gossypium hirsutum HOM05D003970 ORTHO05D004615 4.8e-144 515.0 370 74.1
Peaxi162Scf00219g00019 Petunia axillaris HOM05D003970 ORTHO05D004615 8.2e-144 514.2 386 67.6
Sabra18G0047600 Salix brachista HOM05D003970 ORTHO05D004615 8.2e-144 514.2 392 71.9
BcaB02g08054 Brassica carinata HOM05D003970 ORTHO05D004615 2.0e-142 509.6 359 75.5
C04p43240 Brassica napus HOM05D003970 ORTHO05D004615 3.5e-142 508.8 361 75.9
Hund08710 Selenicereus undatus HOM05D003970 ORTHO05D004615 3.5e-142 508.8 369 72.4
Ca_13142_v3 Cicer arietinum L. HOM05D003970 ORTHO05D004615 7.7e-142 507.7 312 79.5
Lj6g0022796 Lotus japonicus HOM05D003970 ORTHO05D004615 1.0e-141 507.3 354 71.5
Psat1g133240 Pisum sativum HOM05D003970 ORTHO05D004615 2.2e-141 506.1 347 72.6
Os01g0585100 Oryza sativa ssp. japonica HOM05D003970 ORTHO05D004615 2.9e-141 505.8 304 79.6
Medtr2g040600 Medicago truncatula HOM05D003970 ORTHO05D004615 5.0e-141 505.0 354 71.8
EL10Ac8g19144 Beta vulgaris HOM05D003970 ORTHO05D004615 8.5e-141 504.2 367 74.4
BcaC02g09478 Brassica carinata HOM05D003970 ORTHO05D004615 1.1e-140 503.8 361 75.3
BolC4t25903H Brassica oleracea HOM05D003970 ORTHO05D004615 1.1e-140 503.8 361 75.3
VMungo1309G1594 Vigna mungo HOM05D003970 ORTHO05D004615 1.9e-140 503.1 365 68.8
Glyma.15G173000 Glycine max HOM05D003970 ORTHO05D004615 2.5e-140 502.7 310 77.1
Aa31sc339G40 Aethionema arabicum HOM05D003970 ORTHO05D004615 1.6e-139 500.0 377 68.4
Phvul.009G229400 Phaseolus vulgaris HOM05D003970 ORTHO05D004615 2.1e-139 499.6 366 68.9
Glyma.09G067100 Glycine max HOM05D003970 ORTHO05D004615 2.7e-139 499.2 361 68.7
HanXRQChr04g0126061 Helianthus annuus HOM05D003970 ORTHO05D004615 1.8e-138 496.5 364 70.3
Sabra06G0115100 Salix brachista HOM05D003970 ORTHO05D004615 2.3e-138 496.1 373 72.9
Zm00001eb356980 Zea mays HOM05D003970 ORTHO05D004615 3.0e-138 495.7 352 70.7
arahy.Tifrunner.gnm1.ann1.EC17FL Arachis hypogaea HOM05D003970 ORTHO05D004615 1.5e-137 493.4 366 68.3
ECA236G0065 Erigeron canadensis HOM05D003970 ORTHO05D004615 1.5e-137 493.4 358 69.0
Medtr4g125680 Medicago truncatula HOM05D003970 ORTHO05D004615 9.7e-137 490.7 313 76.0
TPR.G9462 Trifolium pratense HOM05D003970 ORTHO05D004615 2.4e-135 486.1 350 68.0
Oeu000306.1 Olea europaea HOM05D003970 ORTHO05D004615 4.1e-135 485.3 314 75.5
TAR624G1217 Trochodendron aralioides HOM05D003970 ORTHO05D004615 4.1e-135 485.3 370 71.9
TPR.G18106 Trifolium pratense HOM05D003970 ORTHO05D004615 7.7e-134 481.1 289 80.3
ATR0051G045 Amborella trichopoda HOM05D003970 ORTHO05D004615 2.5e-132 476.1 307 76.5
HPP92_005531 Vanilla planifolia HOM05D003970 ORTHO05D004615 8.8e-130 467.6 269 82.5
Lsat_1_v5_gn_8_86281 Lactuca sativa HOM05D003970 ORTHO05D004615 4.4e-129 465.3 390 63.8
GSVIVG01015145001 Vitis vinifera HOM05D003970 ORTHO05D004615 2.2e-128 463.0 290 83.1
Hma1.2p1_0169F.1_g074770 Hydrangea macrophylla HOM05D003970 ORTHO05D004615 2.4e-127 459.5 356 71.1
Gohir.D13G197975 Gossypium hirsutum HOM05D003970 ORTHO05D004615 5.4e-127 458.4 304 79.3
Duzib150G0174 Durio zibethinus HOM05D003970 ORTHO05D004615 5.9e-126 454.9 375 67.5
BcaNung06959 Brassica carinata HOM05D003970 ORTHO05D004615 1.3e-125 453.8 343 73.5
Mapoly0061s0008 Marchantia polymorpha HOM05D003970 ORTHO05D004615 8.6e-125 451.1 326 65.6
unitig_26.g9177 Utricularia gibba HOM05D003970 ORTHO05D004615 1.1e-124 450.7 336 64.9
Zm00001eb160510 Zea mays HOM05D003970 ORTHO05D004615 1.4e-122 443.7 278 77.0
Rhsim03G0230700 Rhododendron simsii HOM05D003970 ORTHO05D004615 3.4e-121 439.1 353 66.6
Haze_25957 Corylus avellana HOM05D003970 ORTHO05D004615 9.8e-121 437.6 383 62.9
BcaB06g26940 Brassica carinata HOM05D003970 ORTHO05D004615 3.5e-118 429.1 305 71.1
SMO169G0099 Selaginella moellendorffii HOM05D003970 ORTHO05D004615 9.5e-116 421.0 298 66.1
Pp3c3_9180 Physcomitrium patens HOM05D003970 ORTHO05D004615 3.6e-115 419.1 346 57.8
CDE05G3050 Ceratophyllum demersum HOM05D003970 ORTHO05D004615 1.5e-113 413.7 266 76.7
CSS0012417 Camellia sinensis var. sinensis HOM05D003970 ORTHO05D004615 2.0e-113 413.3 370 64.3
Ah.14g085030 Amaranthus hybridus HOM05D003970 ORTHO05D004615 4.4e-113 412.1 366 60.1
Pp3c2_27340 Physcomitrium patens HOM05D003970 ORTHO05D004615 5.7e-113 411.8 361 56.2
AagrBONN_evm.TU.Sc2ySwM_340.231 Anthoceros agrestis HOM05D003970 ORTHO05D004615 2.2e-112 409.8 316 63.3
SMO271G0136 Selaginella moellendorffii HOM05D003970 ORTHO05D004615 1.9e-108 396.7 326 58.9
arahy.Tifrunner.gnm1.ann1.I25TD2 Arachis hypogaea HOM05D003970 ORTHO05D004615 5.2e-106 388.7 426 51.9
PGSC0003DMG400019544 Solanum tuberosum HOM05D003970 ORTHO05D004615 4.3e-100 369.0 237 76.8
Cpa.g.sc28.103 Carica papaya HOM05D003970 ORTHO05D004615 7.3e-100 368.2 223 80.3
CBR_g16039 Chara braunii HOM05D003970 ORTHO05D004615 2.5e-92 343.2 309 56.0
AagrBONN_evm.TU.Sc2ySwM_340.377 Anthoceros agrestis HOM05D003970 ORTHO05D004615 2.2e-88 330.1 211 71.1
PSO017G0759 Papaver somniferum HOM05D003970 ORTHO05D004615 6.6e-77 292.0 248 64.9
RcHm_v2.0_Chr1g0313941 Rosa chinensis HOM05D003970 ORTHO05D004615 1.7e-64 250.8 147 81.6
Ah.09g231260 Amaranthus hybridus HOM05D003970 ORTHO05D004615 4.3e-60 236.1 319 47.3
Cc02_g26660 Coffea canephora HOM05D003970 ORTHO05D004615 4.0e-58 229.6 168 73.8
SEGI_24858 Sequoiadendron giganteum HOM05D003970 ORTHO05D004615 7.4e-52 208.8 171 58.5
Medtr2g039830 Medicago truncatula HOM05D003970 ORTHO05D004615 1.1e-39 168.3 164 54.3
Zm00001eb362060 Zea mays HOM05D003970 ORTHO05D004615 2.3e-29 134.0 94 72.3
MCO07G676 Micromonas commoda HOM05D003970 ORTHO05D004615 3.5e-25 120.2 357 28.9
Medtr2g039840 Medicago truncatula HOM05D003970 ORTHO05D004615 1.0e-24 118.6 99 60.6
Cre03.g207351 Chlamydomonas reinhardtii HOM05D003970 ORTHO05D004615 1.3e-24 118.2 280 29.6
TPR.G277 Trifolium pratense HOM05D003970 ORTHO05D004615 2.7e-22 110.5 65 75.4
PRCOL_00002316 Prasinoderma coloniale HOM05D003970 ORTHO05D004615 9.7e-20 102.1 297 27.3
Nitab4.5_0003493g0050 Nicotiana tabacum HOM05D003970 ORTHO05D004615 3.1e-18 97.1 252 30.2
Cre14.g620200 Chlamydomonas reinhardtii HOM05D003970 ORTHO05D004615 9.1e-18 95.5 380 25.3
Medtr1g008180 Medicago truncatula HOM05D003970 ORTHO05D004615 7.7e-17 92.4 59 72.9
Zm00001eb242980 Zea mays HOM05D003970 ORTHO05D004615 1.3e-16 91.7 66 71.2
Zm00001eb304220 Zea mays HOM05D003970 ORTHO05D004615 1.3e-16 91.7 66 71.2
Cpa.g.sc28.102 Carica papaya HOM05D003970 ORTHO05D004615 5.0e-16 89.7 76 81.6
Zm00001eb122080 Zea mays HOM05D003970 ORTHO05D004615 1.1e-15 88.6 66 69.7
COL.COLO4_18144 Corchorus olitorius HOM05D003970 ORTHO05D004615 1.5e-15 88.2 90 72.2
COL.COLO4_18145 Corchorus olitorius HOM05D003970 ORTHO05D004615 1.5e-15 88.2 65 72.3
Cfa024865 Carpinus fangiana HOM05D003970 ORTHO05D124560 5.7e-12 76.3 124 34.7
RcHm_v2.0_Chr1g0340041 Rosa chinensis HOM05D003970 ORTHO05D004615 5.9e-09 66.2 33 87.9
QL02p061328 Quercus lobata HOM05D000001 ORTHO05D000003 3.8e-08 63.5 35 77.1
Cpa.g.c48203 Carica papaya HOM05D003970 ORTHO05D004615 1.6e-06 58.2 58 81.0
HanXRQChr05g0141861 Helianthus annuus HOM05D000001 ORTHO05D009862 2.1e-06 57.8 50 60.0


User provided reference genes

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