Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim05G0003000 Rhododendron simsii HOM05D005903 ORTHO05D007293 7.3e-212 740.3 384 100.0
vmacro03560 Vaccinium macrocarpon HOM05D005903 ORTHO05D007293 4.2e-159 565.1 384 78.1
Rhsim13G0219000 Rhododendron simsii HOM05D005903 ORTHO05D007293 1.5e-140 503.4 384 71.1
Rhsim07G0106900 Rhododendron simsii HOM05D005903 ORTHO05D007293 2.6e-137 492.7 384 71.9
Dinv07001 Davidia involucrata HOM05D005903 ORTHO05D007293 1.6e-134 483.4 384 66.9
Hma1.2p1_0088F.1_g045276 Hydrangea macrophylla HOM05D005903 ORTHO05D007293 1.8e-130 469.9 384 64.6
CSS0034787 Camellia sinensis var. sinensis HOM05D005903 ORTHO05D007293 1.1e-127 460.7 371 66.8
Nitab4.5_0010610g0030 Nicotiana tabacum HOM05D005903 ORTHO05D007293 1.6e-126 456.8 384 60.4
GSVIVG01012154001 Vitis vinifera HOM05D005903 ORTHO05D007293 2.0e-124 449.9 384 62.0
Nitab4.5_0000844g0290 Nicotiana tabacum HOM05D005903 ORTHO05D007293 2.6e-124 449.5 384 59.1
QL11p012010 Quercus lobata HOM05D005903 ORTHO05D007293 7.5e-124 448.0 384 60.2
Thecc.02G003100 Theobroma cacao HOM05D005903 ORTHO05D007293 1.8e-122 443.4 384 60.9
TAR624G0428 Trochodendron aralioides HOM05D005903 ORTHO05D007293 2.4e-122 443.0 384 61.2
Eucgr.A00192 Eucalyptus grandis HOM05D005903 ORTHO05D007293 7.0e-122 441.4 382 59.4
Atru.chr10.296 Acer truncatum HOM05D005903 ORTHO05D007293 9.1e-122 441.0 384 59.9
Manes.03G070940 Manihot esculenta HOM05D005903 ORTHO05D007293 1.2e-121 440.7 384 59.6
CANSAT35G1866 Cannabis sativa HOM05D005903 ORTHO05D007293 3.5e-121 439.1 384 58.1
Migut.M02015 Erythranthe guttata HOM05D005903 ORTHO05D007293 7.7e-121 438.0 384 59.1
PGSC0003DMG400007316 Solanum tuberosum HOM05D005903 ORTHO05D007293 1.0e-120 437.6 384 59.1
Dinv26323 Davidia involucrata HOM05D005903 ORTHO05D007293 1.3e-120 437.2 354 65.0
Solyc02g081840.4 Solanum lycopersicum HOM05D005903 ORTHO05D007293 1.3e-120 437.2 384 58.9
Cpa.g.sc30.99 Carica papaya HOM05D005903 ORTHO05D007293 1.7e-120 436.8 384 59.9
CiPaw.09G138500 Carya illinoinensis HOM05D005903 ORTHO05D007293 3.8e-120 435.6 379 60.9
CAN.G809.52 Capsicum annuum HOM05D005903 ORTHO05D007293 5.0e-120 435.3 384 58.6
THA.LOC104812245 Tarenaya hassleriana HOM05D005903 ORTHO05D007293 1.5e-119 433.7 387 58.7
Migut.G01043 Erythranthe guttata HOM05D005903 ORTHO05D007293 1.2e-118 430.6 378 59.0
THA.LOC104824626 Tarenaya hassleriana HOM05D005903 ORTHO05D007293 2.1e-118 429.9 387 58.4
Potri.001G076200 Populus trichocarpa HOM05D005903 ORTHO05D007293 2.7e-118 429.5 384 58.6
C08p34580 Brassica napus HOM05D005903 ORTHO05D007293 8.0e-118 427.9 383 58.2
BolC8t51059H Brassica oleracea HOM05D005903 ORTHO05D007293 3.0e-117 426.0 383 58.0
BcaC07g40489 Brassica carinata HOM05D005903 ORTHO05D007293 5.2e-117 425.2 383 58.0
PGR044G2521 Punica granatum HOM05D005903 ORTHO05D007293 5.2e-117 425.2 384 58.6
AT3G47630 Arabidopsis thaliana HOM05D005903 ORTHO05D007293 1.2e-116 424.1 383 57.7
EL10Ac5g11217 Beta vulgaris HOM05D005903 ORTHO05D007293 2.0e-116 423.3 384 57.6
BcaC01g01793 Brassica carinata HOM05D005903 ORTHO05D007293 3.4e-116 422.5 383 57.4
C03p71840 Brassica napus HOM05D005903 ORTHO05D007293 3.4e-116 422.5 383 57.4
BolC3t19474H Brassica oleracea HOM05D005903 ORTHO05D007293 4.4e-116 422.2 383 57.4
Cc09_g05110 Coffea canephora HOM05D005903 ORTHO05D007293 5.7e-116 421.8 385 57.7
BraA09t40620Z Brassica rapa HOM05D005903 ORTHO05D007293 9.8e-116 421.0 383 56.9
FAN16G3015 Fragaria x ananassa HOM05D005903 ORTHO05D007293 9.8e-116 421.0 384 57.6
AUR62036920 Chenopodium quinoa HOM05D005903 ORTHO05D007293 1.3e-115 420.6 384 57.8
BraA06t25085Z Brassica rapa HOM05D005903 ORTHO05D007293 1.7e-115 420.2 384 57.6
DCAR_003756 Daucus carota HOM05D005903 ORTHO05D007293 2.2e-115 419.9 419 53.9
CARHR156310 Cardamine hirsuta HOM05D005903 ORTHO05D007293 3.7e-115 419.1 383 56.9
FAN21G0687 Fragaria x ananassa HOM05D005903 ORTHO05D007293 4.8e-115 418.7 384 57.6
Nn7g38356 Nelumbo nucifera HOM05D005903 ORTHO05D007293 4.8e-115 418.7 377 59.2
BcaB01g00896 Brassica carinata HOM05D005903 ORTHO05D007293 8.3e-115 417.9 383 57.4
Thhalv10011094m.g Eutrema salsugineum HOM05D005903 ORTHO05D007293 8.3e-115 417.9 383 57.2
A06p19990 Brassica napus HOM05D005903 ORTHO05D007293 1.1e-114 417.5 384 57.3
Carub.0005s1376 Capsella rubella HOM05D005903 ORTHO05D007293 1.1e-114 417.5 383 56.9
A09p51850 Brassica napus HOM05D005903 ORTHO05D007293 1.8e-114 416.8 383 56.4
RcHm_v2.0_Chr5g0021241 Rosa chinensis HOM05D005903 ORTHO05D007293 2.4e-114 416.4 385 57.1
FAN11G1857 Fragaria x ananassa HOM05D005903 ORTHO05D007293 5.4e-114 415.2 384 57.6
Hma1.2p1_0088F.1_g045273 Hydrangea macrophylla HOM05D005903 ORTHO05D007293 5.4e-114 415.2 398 58.3
AL5G26920 Arabidopsis lyrata HOM05D005903 ORTHO05D007293 7.0e-114 414.8 383 56.4
Cc00_g27340 Coffea canephora HOM05D005903 ORTHO05D007293 9.1e-114 414.5 378 57.9
FvH4_3g13050 Fragaria vesca HOM05D005903 ORTHO05D007293 1.6e-113 413.7 384 57.3
FAN25G2454 Fragaria x ananassa HOM05D005903 ORTHO05D007293 1.6e-113 413.7 385 57.1
Gohir.A11G047300 Gossypium hirsutum HOM05D005903 ORTHO05D007293 2.7e-113 412.9 378 59.0
Hma1.2p1_1011F.1_g247520 Hydrangea macrophylla HOM05D005903 ORTHO05D007293 4.5e-113 412.1 398 57.8
PSO675G2427 Papaver somniferum HOM05D005903 ORTHO05D007293 5.9e-113 411.8 381 55.9
Sp1g31680 Schrenkiella parvula HOM05D005903 ORTHO05D007293 5.9e-113 411.8 385 56.1
Lsat_1_v5_gn_1_24420 Lactuca sativa HOM05D005903 ORTHO05D007293 1.0e-112 411.0 376 57.2
Gohir.D11G050900 Gossypium hirsutum HOM05D005903 ORTHO05D007293 6.5e-112 408.3 378 58.5
Gorai.007G055300 Gossypium raimondii HOM05D005903 ORTHO05D007293 6.5e-112 408.3 378 58.5
Aa31LG9G16250 Aethionema arabicum HOM05D005903 ORTHO05D007293 8.5e-112 407.9 383 56.7
MD05G1245400 Malus domestica HOM05D005903 ORTHO05D007293 1.9e-111 406.8 386 56.7
Lj4g0014401 Lotus japonicus HOM05D005903 ORTHO05D007293 3.2e-111 406.0 374 55.9
Dinv01020 Davidia involucrata HOM05D005903 ORTHO05D007293 1.2e-110 404.1 380 58.7
Medtr4g094760 Medicago truncatula HOM05D005903 ORTHO05D007293 3.6e-110 402.5 377 55.2
HanXRQChr12g0369311 Helianthus annuus HOM05D005903 ORTHO05D007293 8.0e-110 401.4 380 55.3
ECA247G0018 Erigeron canadensis HOM05D005903 ORTHO05D007293 1.8e-109 400.2 379 55.9
Hund09980 Selenicereus undatus HOM05D005903 ORTHO05D007293 1.2e-108 397.5 425 51.3
Ca_18231_v3 Cicer arietinum L. HOM05D005903 ORTHO05D007293 1.5e-108 397.1 374 55.1
ClCG01G025750 Citrullus lanatus HOM05D005903 ORTHO05D007293 7.5e-108 394.8 386 54.7
VMungo0251G1440 Vigna mungo HOM05D005903 ORTHO05D007293 8.3e-107 391.3 374 54.8
CsaV3_6G052990 Cucumis sativus L. HOM05D005903 ORTHO05D007293 5.4e-106 388.7 386 53.1
TPR.G23817 Trifolium pratense HOM05D005903 ORTHO05D007293 7.0e-106 388.3 372 55.1
MELO3C007010.2 Cucumis melo HOM05D005903 ORTHO05D007293 9.2e-106 387.9 386 52.8
Duzib052G0373 Durio zibethinus HOM05D005903 ORTHO05D007293 1.0e-104 384.4 406 54.4
Glyma.08G089000 Glycine max HOM05D005903 ORTHO05D007293 2.3e-104 383.3 374 54.0
Glyma.05G134300 Glycine max HOM05D005903 ORTHO05D007293 5.0e-104 382.1 374 52.7
TWI63G1157 Tripterygium wilfordii HOM05D005903 ORTHO05D007293 1.9e-103 380.2 384 54.4
Sabra01G0053000 Salix brachista HOM05D005903 ORTHO05D007293 7.3e-103 378.3 387 53.5
Aqoxy7G00859 Aquilegia oxysepala HOM05D005903 ORTHO05D007293 3.6e-102 375.9 375 53.3
Ciclev10016117m.g Citrus clementina HOM05D005903 ORTHO05D007293 4.0e-101 372.5 346 55.8
Sed0025041 Sechium edule HOM05D005903 ORTHO05D007293 3.2e-98 362.8 376 53.2
Lj1C1150G3 Lonicera japonica HOM05D005903 ORTHO05D007293 3.5e-97 359.4 346 55.5
PSO675G2002 Papaver somniferum HOM05D005903 ORTHO05D007293 4.3e-95 352.4 381 49.6
AUR62032162 Chenopodium quinoa HOM05D005903 ORTHO05D007293 7.3e-95 351.7 299 61.5
Sopen02g026460 Solanum pennellii HOM05D005903 ORTHO05D007293 3.1e-93 346.3 261 68.2
ATR0605G282 Amborella trichopoda HOM05D005903 ORTHO05D007293 6.8e-93 345.1 377 48.5
Haze_05254 Corylus avellana HOM05D005903 ORTHO05D007293 6.8e-93 345.1 379 51.2
SGA_v2.0_scaffold31G12765 Striga asiatica HOM05D005903 ORTHO05D007293 1.5e-92 344.0 380 51.6
arahy.Tifrunner.gnm1.ann1.7A7AL1 Arachis hypogaea HOM05D005903 ORTHO05D007293 2.6e-92 343.2 383 49.6
Prupe.7G025500 Prunus persica HOM05D005903 ORTHO05D007293 4.3e-87 325.9 285 59.3
Psat7g087640 Pisum sativum HOM05D005903 ORTHO05D007293 8.1e-86 321.6 303 54.5
Prupe.4G118500 Prunus persica HOM05D005903 ORTHO05D007293 1.5e-84 317.4 249 65.9
Phvul.002G188100 Phaseolus vulgaris HOM05D005903 ORTHO05D007293 4.9e-83 312.4 287 56.8
SEGI_28167 Sequoiadendron giganteum HOM05D005903 ORTHO05D007293 4.9e-83 312.4 380 45.8
Peaxi162Scf00036g02217 Petunia axillaris HOM05D005903 ORTHO05D007293 7.1e-82 308.5 348 48.6
HPP92_021274 Vanilla planifolia HOM05D005903 ORTHO05D007293 1.3e-80 304.3 381 45.7
CDE06G1059 Ceratophyllum demersum HOM05D005903 ORTHO05D007293 5.8e-76 288.9 386 44.6
COL.COLO4_05791 Corchorus olitorius HOM05D005903 ORTHO05D007293 1.0e-72 278.1 241 60.2
arahy.Tifrunner.gnm1.ann1.STP4KF Arachis hypogaea HOM05D005903 ORTHO05D007293 4.3e-71 272.7 383 43.6
Os11g0549650 Oryza sativa ssp. japonica HOM05D005903 ORTHO05D007293 8.9e-69 265.0 264 53.0
Zm00001eb201720 Zea mays HOM05D005903 ORTHO05D007293 1.1e-66 258.1 275 50.5
AagrBONN_evm.TU.Sc2ySwM_344.2832 Anthoceros agrestis HOM05D005903 ORTHO05D007293 7.1e-66 255.4 378 39.2
Lalb_Chr07g0188231 Lupinus albus HOM05D005903 ORTHO05D007293 7.1e-66 255.4 236 55.1
SMO367G0859 Selaginella moellendorffii HOM05D005903 ORTHO05D007293 7.1e-66 255.4 382 38.5
Oeu056062.1 Olea europaea HOM05D005903 ORTHO05D007293 1.1e-61 241.5 213 56.8
Pp3c7_4190 Physcomitrium patens HOM05D005903 ORTHO05D007293 2.0e-60 237.3 383 35.5
Mapoly0019s0171 Marchantia polymorpha HOM05D005903 ORTHO05D007293 1.7e-59 234.2 380 36.3
unitig_46.g18341 Utricularia gibba HOM05D005903 ORTHO05D007293 2.2e-59 233.8 387 40.8
Sc04g0004130 Simmondsia chinensis HOM05D005903 ORTHO05D007293 2.8e-46 190.3 171 58.5
Gohir.D11G050975 Gossypium hirsutum HOM05D005903 ORTHO05D007293 3.1e-45 186.8 218 50.0
Os11g0549690 Oryza sativa ssp. japonica HOM05D005903 ORTHO05D007293 9.0e-45 185.3 200 49.0
Sc04g0004120 Simmondsia chinensis HOM05D005903 ORTHO05D007293 1.7e-43 181.0 171 52.6
Haze_05249 Corylus avellana HOM05D005903 ORTHO05D007293 2.4e-37 160.6 205 48.8
CBR_g23454 Chara braunii HOM05D001496 ORTHO05D007453 3.0e-32 143.7 240 36.2
Lalb_Chr07g0188221 Lupinus albus HOM05D005903 ORTHO05D007293 5.1e-32 142.9 146 52.7
MCO11G061 Micromonas commoda HOM05D005903 ORTHO05D007293 7.4e-31 139.0 401 27.2
Cfa024540 Carpinus fangiana HOM05D005903 ORTHO05D007293 6.3e-30 136.0 281 32.7
Cre10.g436900 Chlamydomonas reinhardtii HOM05D005903 ORTHO05D007293 3.2e-26 123.6 366 28.4
CARHR106840 Cardamine hirsuta HOM05D005903 ORTHO05D007293 1.2e-25 121.7 129 52.7
Migut.O00470 Erythranthe guttata HOM05D005903 ORTHO05D007293 3.9e-24 116.7 192 41.7
PRCOL_00001260 Prasinoderma coloniale HOM05D005903 ORTHO05D007293 3.1e-21 107.1 406 26.6
CAN.G508.15 Capsicum annuum HOM05D005903 ORTHO05D007293 3.8e-19 100.1 250 30.4
COL.COLO4_05792 Corchorus olitorius HOM05D005903 ORTHO05D007293 1.8e-16 91.3 75 61.3
Glyma.08G193350 Glycine max HOM05D005903 ORTHO05D007293 1.8e-13 81.3 59 64.4
Oeu056063.2 Olea europaea HOM05D007234 ORTHO05D008488 2.4e-13 80.9 65 63.1
SHI32711 Sapria himalayana HOM05D005903 ORTHO05D007293 1.1e-10 72.0 55 54.5
Os05g0295700 Oryza sativa ssp. japonica HOM05D005903 ORTHO05D007293 1.2e-09 68.6 89 37.1
SHI32710 Sapria himalayana HOM05D005903 ORTHO05D007293 1.6e-09 68.2 87 44.8
CBR_g8146 Chara braunii HOM05D005903 ORTHO05D000048 3.3e-07 60.5 66 48.5


User provided reference genes

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