Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim05G0000400 Rhododendron simsii HOM05D000916 ORTHO05D338960 2.9e-68 261.9 149 100.0
Rhsim12G0000100 Rhododendron simsii HOM05D006708 ORTHO05D007921 4.2e-22 108.6 279 39.1
CSS0033181 Camellia sinensis var. sinensis HOM05D000916 ORTHO05D007921 7.1e-14 81.3 143 43.4
vmacro00901 Vaccinium macrocarpon HOM05D000916 ORTHO05D007921 3.9e-12 75.5 255 36.1
CSS0018791 Camellia sinensis var. sinensis HOM05D000916 ORTHO05D007921 2.5e-11 72.8 177 35.0
Sabra19G0077100 Salix brachista HOM05D000916 ORTHO05D007921 1.1e-09 67.4 176 33.0
Sabra19G0079700 Salix brachista HOM05D000916 ORTHO05D007921 1.4e-09 67.0 176 33.0
Oeu051786.1 Olea europaea HOM05D000916 ORTHO05D007921 2.4e-09 66.2 149 33.6
Potri.019G063900 Populus trichocarpa HOM05D000916 ORTHO05D007921 2.4e-09 66.2 177 32.2
QL08p042529 Quercus lobata HOM05D000916 ORTHO05D007921 3.1e-09 65.9 150 32.7
Haze_13434 Corylus avellana HOM05D000916 ORTHO05D007921 5.3e-09 65.1 149 34.9
Cfa022925 Carpinus fangiana HOM05D000916 ORTHO05D007921 6.9e-09 64.7 172 32.6
Actinidia09044 Actinidia chinensis HOM05D000916 ORTHO05D007921 1.2e-08 63.9 149 32.9
Hma1.2p1_0278F.1_g111780 Hydrangea macrophylla HOM05D000916 ORTHO05D007921 3.4e-08 62.4 142 31.7
Thecc.02G150300 Theobroma cacao HOM05D000916 ORTHO05D007921 7.6e-08 61.2 151 31.1
MSTRG.25473 Avicennia marina HOM05D000916 ORTHO05D007921 9.9e-08 60.8 150 32.0
Ciclev10024042m.g Citrus clementina HOM05D000916 ORTHO05D007921 1.3e-07 60.5 152 32.9
Ciclev10024539m.g Citrus clementina HOM05D000916 ORTHO05D007921 1.3e-07 60.5 152 32.9
Lsat_1_v5_gn_4_131361 Lactuca sativa HOM05D000916 ORTHO05D007921 1.7e-07 60.1 111 38.7
Manes.16G046800 Manihot esculenta HOM05D000916 ORTHO05D007921 1.7e-07 60.1 145 31.0
Duzib052G0187 Durio zibethinus HOM05D000916 ORTHO05D007921 2.9e-07 59.3 153 32.0
Ciclev10020543m.g Citrus clementina HOM05D000916 ORTHO05D007921 3.8e-07 58.9 147 34.0
arahy.Tifrunner.gnm1.ann1.G72GGE Arachis hypogaea HOM05D000916 ORTHO05D007921 4.9e-07 58.5 153 30.7
CiPaw.03G193200 Carya illinoinensis HOM05D000916 ORTHO05D007921 4.9e-07 58.5 150 30.7
Ciclev10020551m.g Citrus clementina HOM05D000916 ORTHO05D007921 6.4e-07 58.2 147 33.3
Lj7C414G3 Lonicera japonica HOM05D000916 ORTHO05D007921 6.4e-07 58.2 28 96.4
Ciclev10021706m.g Citrus clementina HOM05D000916 ORTHO05D007921 1.1e-06 57.4 147 31.3
Migut.C01319 Erythranthe guttata HOM05D000916 ORTHO05D007921 1.1e-06 57.4 154 31.2
Eucgr.F04110 Eucalyptus grandis HOM05D000916 ORTHO05D007921 1.1e-06 57.4 151 29.8
Gohir.A13G063400 Gossypium hirsutum HOM05D000916 ORTHO05D007921 1.4e-06 57.0 145 29.7
Phvul.007G113800 Phaseolus vulgaris HOM05D000916 ORTHO05D007921 1.4e-06 57.0 32 81.2
FAN20G1855 Fragaria x ananassa HOM05D006098 ORTHO05D007470 2.4e-06 56.2 152 32.2
Glyma.20G214000 Glycine max HOM05D000916 ORTHO05D007921 3.2e-06 55.8 32 78.1
Hma1.2p1_0278F.1_g111790 Hydrangea macrophylla HOM05D000916 ORTHO05D007921 3.2e-06 55.8 32 81.2
Solyc02g070490.4 Solanum lycopersicum HOM05D000916 ORTHO05D007921 3.2e-06 55.8 150 31.3
PGSC0003DMG400021092 Solanum tuberosum HOM05D000916 ORTHO05D007921 3.2e-06 55.8 150 31.3
VMungo0720G0569 Vigna mungo HOM05D000916 ORTHO05D007921 3.2e-06 55.8 32 78.1
arahy.Tifrunner.gnm1.ann1.Y677VA Arachis hypogaea HOM05D000916 ORTHO05D007921 4.2e-06 55.5 32 78.1
ClCG08G002000 Citrullus lanatus HOM05D000916 ORTHO05D007921 5.5e-06 55.1 32 78.1
Ciclev10021413m.g Citrus clementina HOM05D000916 ORTHO05D007921 5.5e-06 55.1 32 78.1
Ciclev10021643m.g Citrus clementina HOM05D000916 ORTHO05D007921 5.5e-06 55.1 32 78.1
Ciclev10021704m.g Citrus clementina HOM05D000916 ORTHO05D007921 5.5e-06 55.1 32 78.1
COL.COLO4_08311 Corchorus olitorius HOM05D000916 ORTHO05D007921 5.5e-06 55.1 32 78.1
MELO3C025041.2 Cucumis melo HOM05D000916 ORTHO05D007921 5.5e-06 55.1 32 78.1
CsaV3_6G002450 Cucumis sativus L. HOM05D000916 ORTHO05D007921 5.5e-06 55.1 32 78.1
SalBow7G2842 Salvia bowleyana HOM05D000916 ORTHO05D007921 5.5e-06 55.1 32 81.2
Sed0003753 Sechium edule HOM05D000916 ORTHO05D007921 5.5e-06 55.1 32 78.1
Lj5g0015287 Lotus japonicus HOM05D000916 ORTHO05D007921 7.1e-06 54.7 32 75.0
Os05g0419000 Oryza sativa ssp. japonica HOM05D000916 ORTHO05D007921 7.1e-06 54.7 32 78.1
Aa31LG9G17030 Aethionema arabicum HOM05D000916 ORTHO05D007921 9.3e-06 54.3 150 30.7
Ca_09901_v3 Cicer arietinum L. HOM05D000916 ORTHO05D007921 9.3e-06 54.3 31 77.4
ECA232G4321 Erigeron canadensis HOM05D000916 ORTHO05D007921 9.3e-06 54.3 205 27.3
Gohir.D13G058800 Gossypium hirsutum HOM05D000916 ORTHO05D007921 9.3e-06 54.3 32 75.0
Lalb_Chr02g0149821 Lupinus albus HOM05D000916 ORTHO05D007921 9.3e-06 54.3 32 75.0
Medtr1g076920 Medicago truncatula HOM05D000916 ORTHO05D007921 9.3e-06 54.3 31 77.4
Nitab4.5_0002744g0010 Nicotiana tabacum HOM05D000916 ORTHO05D007921 9.3e-06 54.3 150 31.3
Psat6g112920 Pisum sativum HOM05D000916 ORTHO05D007921 9.3e-06 54.3 31 77.4


User provided reference genes

Program Settings