Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim04G0239300 Rhododendron simsii HOM05D005046 ORTHO05D006194 6.5e-52 207.2 112 100.0
vmacro08042 Vaccinium macrocarpon HOM05D005046 ORTHO05D006194 9.7e-48 193.4 112 93.8
CSS0005662 Camellia sinensis var. sinensis HOM05D005046 ORTHO05D006194 8.5e-44 180.3 112 88.4
CSS0011224 Camellia sinensis var. sinensis HOM05D005046 ORTHO05D006194 8.5e-44 180.3 112 88.4
CSS0039452 Camellia sinensis var. sinensis HOM05D005046 ORTHO05D006194 8.5e-44 180.3 112 88.4
Actinidia18456 Actinidia chinensis HOM05D005046 ORTHO05D006194 1.1e-43 179.9 112 86.6
Actinidia40381 Actinidia chinensis HOM05D005046 ORTHO05D006194 1.1e-43 179.9 112 86.6
HanXRQChr11g0353491 Helianthus annuus HOM05D005046 ORTHO05D006194 1.4e-43 179.5 111 87.4
Actinidia14256 Actinidia chinensis HOM05D005046 ORTHO05D006194 3.2e-43 178.3 112 86.6
Glyma.15G139900 Glycine max HOM05D005046 ORTHO05D006194 5.5e-43 177.6 112 85.7
Potri.010G146100 Populus trichocarpa HOM05D005046 ORTHO05D006194 5.5e-43 177.6 112 84.8
CAN.G484.64 Capsicum annuum HOM05D005046 ORTHO05D006194 7.2e-43 177.2 112 87.5
Solyc12g099240.2 Solanum lycopersicum HOM05D005046 ORTHO05D006194 1.6e-42 176.0 112 84.8
Sopen12g033920 Solanum pennellii HOM05D005046 ORTHO05D006194 1.6e-42 176.0 112 84.8
PGSC0003DMG400004620 Solanum tuberosum HOM05D005046 ORTHO05D006194 1.6e-42 176.0 112 84.8
Lalb_Chr18g0058661 Lupinus albus HOM05D005046 ORTHO05D006194 2.1e-42 175.6 112 84.8
Sabra10G0112600 Salix brachista HOM05D005046 ORTHO05D006194 2.1e-42 175.6 112 84.8
Lsat_1_v5_gn_1_41381 Lactuca sativa HOM05D005046 ORTHO05D006194 2.7e-42 175.3 111 85.6
Phvul.006G118400 Phaseolus vulgaris HOM05D005046 ORTHO05D006194 3.6e-42 174.9 112 84.8
VMungo0540G1157 Vigna mungo HOM05D005046 ORTHO05D006194 3.6e-42 174.9 112 84.8
Medtr2g034010 Medicago truncatula HOM05D005046 ORTHO05D006194 4.6e-42 174.5 112 83.9
Peaxi162Scf00228g00326 Petunia axillaris HOM05D005046 ORTHO05D006194 4.6e-42 174.5 112 86.6
TPR.G13743 Trifolium pratense HOM05D005046 ORTHO05D006194 4.6e-42 174.5 112 83.9
Lalb_Chr20g0120821 Lupinus albus HOM05D005046 ORTHO05D006194 1.0e-41 173.3 112 84.8
Prupe.1G116800 Prunus persica HOM05D005046 ORTHO05D006194 1.0e-41 173.3 112 83.9
Dinv44282 Davidia involucrata HOM05D005046 ORTHO05D006194 1.8e-41 172.6 112 85.7
Psat1g160840 Pisum sativum HOM05D005046 ORTHO05D006194 1.8e-41 172.6 112 83.0
Ciclev10006264m.g Citrus clementina HOM05D005046 ORTHO05D006194 3.0e-41 171.8 112 83.9
Nitab4.5_0000403g0120 Nicotiana tabacum HOM05D005046 ORTHO05D006194 3.0e-41 171.8 112 83.0
Rhsim02G0003600 Rhododendron simsii HOM05D005046 ORTHO05D006194 3.0e-41 171.8 110 85.5
Manes.15G000300 Manihot esculenta HOM05D005046 ORTHO05D006194 3.9e-41 171.4 112 83.0
Dinv15163 Davidia involucrata HOM05D005046 ORTHO05D006194 1.5e-40 169.5 112 83.0
Lj6A691T78 Lonicera japonica HOM05D005046 ORTHO05D006194 1.5e-40 169.5 112 83.9
Lj6g0015111 Lotus japonicus HOM05D005046 ORTHO05D006194 1.9e-40 169.1 112 83.0
GSVIVG01034987001 Vitis vinifera HOM05D005046 ORTHO05D006194 2.5e-40 168.7 113 85.0
Aqoxy5G02541 Aquilegia oxysepala HOM05D005046 ORTHO05D006194 3.3e-40 168.3 113 83.2
SGA_v2.0_scaffold104G30073 Striga asiatica HOM05D005046 ORTHO05D006194 3.3e-40 168.3 112 83.9
Cfa015310 Carpinus fangiana HOM05D005046 ORTHO05D006194 4.3e-40 167.9 112 82.1
QL05p065557 Quercus lobata HOM05D005046 ORTHO05D006194 4.3e-40 167.9 108 82.4
Ca_00977_v3 Cicer arietinum L. HOM05D005046 ORTHO05D006194 5.7e-40 167.5 112 81.2
Glyma.09G035300 Glycine max HOM05D005046 ORTHO05D006194 7.4e-40 167.2 112 82.1
TAR636G1364 Trochodendron aralioides HOM05D005046 ORTHO05D006194 9.7e-40 166.8 112 83.0
arahy.Tifrunner.gnm1.ann1.4F0N5D Arachis hypogaea HOM05D005046 ORTHO05D006194 1.3e-39 166.4 112 80.4
arahy.Tifrunner.gnm1.ann1.KUZ2VC Arachis hypogaea HOM05D005046 ORTHO05D006194 1.3e-39 166.4 112 80.4
MD13G1153200 Malus domestica HOM05D005046 ORTHO05D006194 1.3e-39 166.4 112 81.2
Glyma.17G033800 Glycine max HOM05D005046 ORTHO05D006194 2.2e-39 165.6 112 82.1
Nn3g21734 Nelumbo nucifera HOM05D005046 ORTHO05D006194 2.2e-39 165.6 112 83.0
MSTRG.24823 Avicennia marina HOM05D005046 ORTHO05D006194 2.8e-39 165.2 112 81.2
MELO3C021266.2 Cucumis melo HOM05D005046 ORTHO05D006194 4.8e-39 164.5 112 80.4
MD16G1153600 Malus domestica HOM05D005046 ORTHO05D006194 4.8e-39 164.5 112 80.4
CANSAT78G2375 Cannabis sativa HOM05D005046 ORTHO05D006194 6.3e-39 164.1 113 79.6
Migut.G00065 Erythranthe guttata HOM05D005046 ORTHO05D006194 6.3e-39 164.1 112 82.1
MSTRG.10153 Avicennia marina HOM05D005046 ORTHO05D006194 8.2e-39 163.7 112 80.4
Glyma.07G239500 Glycine max HOM05D005046 ORTHO05D006194 8.2e-39 163.7 112 81.2
PSO210G4010 Papaver somniferum HOM05D005046 ORTHO05D006194 1.1e-38 163.3 112 80.4
PSO761G0203 Papaver somniferum HOM05D005046 ORTHO05D006194 1.1e-38 163.3 112 80.4
CAN.G158.24 Capsicum annuum HOM05D005046 ORTHO05D006194 1.4e-38 162.9 112 80.4
TWI73G0015 Tripterygium wilfordii HOM05D005046 ORTHO05D006194 1.4e-38 162.9 112 79.5
Eucgr.H04047 Eucalyptus grandis HOM05D005046 ORTHO05D006194 1.8e-38 162.5 112 80.4
CsaV3_6G028590 Cucumis sativus L. HOM05D005046 ORTHO05D006194 4.1e-38 161.4 112 79.5
Oeu001169.1 Olea europaea HOM05D005046 ORTHO05D006194 4.1e-38 161.4 105 84.8
PGR004G2877 Punica granatum HOM05D005046 ORTHO05D006194 4.1e-38 161.4 112 78.6
Phvul.003G114500 Phaseolus vulgaris HOM05D005046 ORTHO05D006194 5.3e-38 161.0 112 78.6
VMungo1215G0235 Vigna mungo HOM05D005046 ORTHO05D006194 5.3e-38 161.0 112 78.6
CiPaw.01G138200 Carya illinoinensis HOM05D005046 ORTHO05D006194 1.2e-37 159.8 112 78.6
SalBow5G2652 Salvia bowleyana HOM05D005046 ORTHO05D006194 1.2e-37 159.8 112 77.7
Gorai.005G067500 Gossypium raimondii HOM05D005046 ORTHO05D006194 1.5e-37 159.5 112 77.7
Sed0022816 Sechium edule HOM05D005046 ORTHO05D006194 1.5e-37 159.5 112 79.5
Gohir.A02G054900 Gossypium hirsutum HOM05D005046 ORTHO05D006194 2.0e-37 159.1 112 77.7
CiPaw.02G074700 Carya illinoinensis HOM05D005046 ORTHO05D006194 2.6e-37 158.7 112 76.8
COL.COLO4_34610 Corchorus olitorius HOM05D005046 ORTHO05D006194 2.6e-37 158.7 112 78.6
Sed0009015 Sechium edule HOM05D005046 ORTHO05D006194 2.6e-37 158.7 110 78.2
Actinidia13356 Actinidia chinensis HOM05D005046 ORTHO05D006194 5.9e-37 157.5 100 86.0
CDE02G0992 Ceratophyllum demersum HOM05D005046 ORTHO05D006194 5.9e-37 157.5 113 78.8
Haze_01302 Corylus avellana HOM05D005046 ORTHO05D006194 5.9e-37 157.5 112 79.5
Gohir.D01G023544 Gossypium hirsutum HOM05D005046 ORTHO05D006194 7.7e-37 157.1 112 77.7
Gorai.002G030300 Gossypium raimondii HOM05D005046 ORTHO05D006194 7.7e-37 157.1 112 77.7
MBI18_g37558_MAGBIO Magnolia biondii HOM05D005046 ORTHO05D006194 7.7e-37 157.1 135 71.1
HPP92_016092 Vanilla planifolia HOM05D005046 ORTHO05D006194 7.7e-37 157.1 112 77.7
RcHm_v2.0_Chr4g0425361 Rosa chinensis HOM05D005046 ORTHO05D006194 1.0e-36 156.8 112 78.6
ATR0693G376 Amborella trichopoda HOM05D005046 ORTHO05D006194 1.7e-36 156.0 99 85.9
Gohir.A01G034600 Gossypium hirsutum HOM05D005046 ORTHO05D006194 1.7e-36 156.0 112 76.8
FvH4_4g19820 Fragaria vesca HOM05D005046 ORTHO05D006194 2.2e-36 155.6 112 77.7
FAN07G0875 Fragaria x ananassa HOM05D005046 ORTHO05D006194 2.2e-36 155.6 112 77.7
FAN12G2964 Fragaria x ananassa HOM05D005046 ORTHO05D006194 2.2e-36 155.6 112 77.7
Thecc.04G301400 Theobroma cacao HOM05D005046 ORTHO05D006194 2.9e-36 155.2 112 77.7
Duzib212G1042 Durio zibethinus HOM05D005046 ORTHO05D006194 5.0e-36 154.5 112 76.8
Duzib052G0826 Durio zibethinus HOM05D005046 ORTHO05D006194 8.5e-36 153.7 112 76.8
THA.LOC104805014 Tarenaya hassleriana HOM05D005046 ORTHO05D006194 1.1e-35 153.3 110 77.3
Potri.008G105000 Populus trichocarpa HOM05D005046 ORTHO05D006194 1.9e-35 152.5 112 76.8
Nitab4.5_0000496g0080 Nicotiana tabacum HOM05D005046 ORTHO05D006194 2.5e-35 152.1 112 75.0
Pp3c15_12430 Physcomitrium patens HOM05D005046 ORTHO05D006194 2.5e-35 152.1 106 77.4
Zm00001eb211320 Zea mays HOM05D005046 ORTHO05D006194 2.5e-35 152.1 100 79.0
BNapus_Darmor_BZH_scaffold_118p00040 Brassica napus HOM05D005046 ORTHO05D006194 3.2e-35 151.8 110 74.5
unitig_749.g13361 Utricularia gibba HOM05D005046 ORTHO05D006194 4.2e-35 151.4 106 76.4
ClCG06G004560 Citrullus lanatus HOM05D005046 ORTHO05D006194 5.5e-35 151.0 128 69.5
Os03g0832300 Oryza sativa ssp. japonica HOM05D005046 ORTHO05D006194 7.2e-35 150.6 100 78.0
BraA01t04428Z Brassica rapa HOM05D005046 ORTHO05D006194 1.6e-34 149.4 110 73.6
Aa31LG5G17170 Aethionema arabicum HOM05D005046 ORTHO05D006194 2.7e-34 148.7 110 72.7
Thhalv10021793m.g Eutrema salsugineum HOM05D005046 ORTHO05D006194 2.7e-34 148.7 110 72.7
A05p41430 Brassica napus HOM05D005046 ORTHO05D006194 3.6e-34 148.3 110 73.6
C05p60640 Brassica napus HOM05D005046 ORTHO05D006194 3.6e-34 148.3 110 73.6
BolC5t34723H Brassica oleracea HOM05D005046 ORTHO05D006194 3.6e-34 148.3 110 73.6
BraA05t22864Z Brassica rapa HOM05D005046 ORTHO05D006194 3.6e-34 148.3 110 73.6
Sp3g05540 Schrenkiella parvula HOM05D005046 ORTHO05D006194 3.6e-34 148.3 110 72.7
vmacro15180 Vaccinium macrocarpon HOM05D005046 ORTHO05D006194 4.7e-34 147.9 182 53.8
THA.LOC104818881 Tarenaya hassleriana HOM05D005046 ORTHO05D006194 6.1e-34 147.5 110 71.8
AT3G06610 Arabidopsis thaliana HOM05D005046 ORTHO05D006194 7.9e-34 147.1 110 72.7
BcaC05g30546 Brassica carinata HOM05D005046 ORTHO05D006194 7.9e-34 147.1 111 73.9
CARHR081150 Cardamine hirsuta HOM05D005046 ORTHO05D006194 1.0e-33 146.7 110 71.8
Carub.0003s0607 Capsella rubella HOM05D005046 ORTHO05D006194 1.4e-33 146.4 110 72.7
Hund11979 Selenicereus undatus HOM05D005046 ORTHO05D006194 3.0e-33 145.2 112 73.2
AagrBONN_evm.TU.Sc2ySwM_368.969 Anthoceros agrestis HOM05D005046 ORTHO05D006194 6.7e-33 144.1 97 80.4
AL3G17660 Arabidopsis lyrata HOM05D005046 ORTHO05D006194 1.1e-32 143.3 110 71.8
BolC1t05599H Brassica oleracea HOM05D005046 ORTHO05D006194 1.1e-32 143.3 110 70.9
ECA240G2346 Erigeron canadensis HOM05D005046 ORTHO05D006194 1.1e-32 143.3 109 74.3
PSO063G6303 Papaver somniferum HOM05D005046 ORTHO05D006194 2.6e-32 142.1 112 70.5
Sabra08G0079200 Salix brachista HOM05D005046 ORTHO05D006194 2.6e-32 142.1 112 75.0
Sc25g0003240 Simmondsia chinensis HOM05D005046 ORTHO05D006194 4.4e-32 141.4 112 72.3
SMO304G0028 Selaginella moellendorffii HOM05D005046 ORTHO05D006194 9.7e-32 140.2 97 76.3
PSO017G4602 Papaver somniferum HOM05D005046 ORTHO05D006194 1.7e-31 139.4 112 71.4
EL10Ac3g05511 Beta vulgaris HOM05D005046 ORTHO05D006194 6.3e-31 137.5 112 72.3
Nitab4.5_0002150g0070 Nicotiana tabacum HOM05D005046 ORTHO05D006194 6.3e-31 137.5 112 71.4
AUR62016211 Chenopodium quinoa HOM05D005046 ORTHO05D006194 1.4e-30 136.3 113 69.9
Ah.13g071840 Amaranthus hybridus HOM05D005046 ORTHO05D006194 3.1e-30 135.2 113 70.8
AUR62039277 Chenopodium quinoa HOM05D005046 ORTHO05D006194 4.1e-30 134.8 112 69.6
Nitab4.5_0002294g0080 Nicotiana tabacum HOM05D005046 ORTHO05D006194 3.4e-29 131.7 112 69.6
Mapoly0010s0169 Marchantia polymorpha HOM05D005046 ORTHO05D006194 4.5e-29 131.3 98 70.4
AagrBONN_evm.TU.Sc2ySwM_368.976 Anthoceros agrestis HOM05D005046 ORTHO05D006194 2.9e-28 128.6 85 81.2
CBR_g51449 Chara braunii HOM05D005046 ORTHO05D006194 3.2e-27 125.2 96 68.8
Cc03_g00760 Coffea canephora HOM05D005046 ORTHO05D006194 4.7e-26 121.3 84 79.8
Manes.03G205301 Manihot esculenta HOM05D005046 ORTHO05D006194 2.6e-24 115.5 107 65.4
BcaC09g47907 Brassica carinata HOM05D005046 ORTHO05D006194 3.5e-21 105.1 110 57.3
Gohir.D02G059900 Gossypium hirsutum HOM05D005046 ORTHO05D006194 4.5e-21 104.8 68 80.9
DCAR_026983 Daucus carota HOM05D005046 ORTHO05D006194 2.0e-16 89.4 59 81.4
TAR365G1002 Trochodendron aralioides HOM05D005046 ORTHO05D006194 2.6e-16 89.0 63 81.0
Atru.chr4.2994 Acer truncatum HOM05D005046 ORTHO05D006194 5.7e-16 87.8 53 83.0
Lj5g0009192 Lotus japonicus HOM05D005046 ORTHO05D006194 1.6e-13 79.7 93 58.1
Eucgr.J02724 Eucalyptus grandis HOM05D005046 ORTHO05D006194 2.0e-13 79.3 88 54.5
SEGI_33495 Sequoiadendron giganteum HOM05D005046 ORTHO05D006194 4.5e-13 78.2 52 80.8
RcHm_v2.0_Chr5g0023271 Rosa chinensis HOM05D005046 ORTHO05D006194 1.3e-12 76.6 62 67.7
Atru.chr4.2993 Acer truncatum HOM05D005046 ORTHO05D006194 8.5e-12 73.9 53 77.4
Lj1g0019312 Lotus japonicus HOM05D005046 ORTHO05D006194 1.1e-11 73.6 67 64.2
AL3G18870 Arabidopsis lyrata HOM05D005046 ORTHO05D006194 1.9e-11 72.8 62 64.5
Cre01.g041000 Chlamydomonas reinhardtii HOM05D005046 ORTHO05D006194 7.5e-08 60.8 102 42.2


User provided reference genes

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