Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim04G0235400 Rhododendron simsii HOM05D006559 ORTHO05D008867 0.0e+00 1333.2 660 100.0
vmacro08053 Vaccinium macrocarpon HOM05D006559 ORTHO05D008867 0.0e+00 1171.0 658 87.7
Dinv44291 Davidia involucrata HOM05D006559 ORTHO05D008867 9.3e-300 1033.1 665 78.8
Hma1.2p1_0078F.1_g039970 Hydrangea macrophylla HOM05D006559 ORTHO05D008867 4.2e-276 954.5 615 77.1
CSS0039775 Camellia sinensis var. sinensis HOM05D006559 ORTHO05D008867 2.0e-273 945.7 657 74.3
GSVIVG01035001001 Vitis vinifera HOM05D006559 ORTHO05D008867 1.2e-270 936.4 658 71.4
Thecc.04G299700 Theobroma cacao HOM05D006559 ORTHO05D008867 8.5e-269 930.2 660 70.8
Cpa.g.sc9.65 Carica papaya HOM05D006559 ORTHO05D008867 5.5e-268 927.5 663 70.1
Cfa008663 Carpinus fangiana HOM05D006559 ORTHO05D008867 6.7e-266 920.6 658 70.5
Sabra10G0111500 Salix brachista HOM05D006559 ORTHO05D008867 2.0e-265 919.1 661 70.5
Gohir.A09G234700 Gossypium hirsutum HOM05D006559 ORTHO05D008867 4.5e-262 907.9 648 68.4
Nitab4.5_0011895g0010 Nicotiana tabacum HOM05D006559 ORTHO05D008867 3.8e-261 904.8 663 68.8
Potri.010G144400 Populus trichocarpa HOM05D006559 ORTHO05D008867 5.0e-261 904.4 652 69.3
CAN.G244.5 Capsicum annuum HOM05D006559 ORTHO05D008867 6.5e-261 904.0 655 68.5
Gorai.006G258500 Gossypium raimondii HOM05D006559 ORTHO05D008867 8.5e-261 903.7 663 67.3
Manes.03G204300 Manihot esculenta HOM05D006559 ORTHO05D008867 3.2e-260 901.7 661 68.2
Gohir.D09G235500 Gossypium hirsutum HOM05D006559 ORTHO05D008867 4.2e-260 901.4 648 68.1
PGSC0003DMG400021843 Solanum tuberosum HOM05D006559 ORTHO05D008867 1.0e-258 896.7 640 69.5
Sopen01g026050 Solanum pennellii HOM05D006559 ORTHO05D008867 1.4e-258 896.3 640 69.2
Peaxi162Scf00228g00226 Petunia axillaris HOM05D006559 ORTHO05D008867 4.0e-258 894.8 668 68.6
Solyc01g059920.4 Solanum lycopersicum HOM05D006559 ORTHO05D008867 2.6e-257 892.1 669 67.3
Cc03_g00890 Coffea canephora HOM05D006559 ORTHO05D008867 3.7e-256 888.3 636 70.0
Lj4g0009670 Lotus japonicus HOM05D006559 ORTHO05D008867 4.8e-256 887.9 659 67.7
CANSAT64G0770 Cannabis sativa HOM05D006559 ORTHO05D008867 5.4e-255 884.4 643 67.7
Migut.G00055 Erythranthe guttata HOM05D006559 ORTHO05D008867 7.0e-255 884.0 659 66.2
VMungo1215G0265 Vigna mungo HOM05D006559 ORTHO05D008867 9.1e-255 883.6 658 68.1
Sc19g0003140 Simmondsia chinensis HOM05D006559 ORTHO05D008867 1.0e-253 880.2 666 66.4
MD13G1155000 Malus domestica HOM05D006559 ORTHO05D008867 6.5e-253 877.5 663 66.5
Hund11970 Selenicereus undatus HOM05D006559 ORTHO05D008867 8.5e-253 877.1 663 66.5
Ca_21444_v3 Cicer arietinum L. HOM05D006559 ORTHO05D008867 3.2e-252 875.2 666 66.2
TWI73G0870 Tripterygium wilfordii HOM05D006559 ORTHO05D008867 7.2e-252 874.0 668 65.9
Glyma.07G240200 Glycine max HOM05D006559 ORTHO05D008867 1.6e-251 872.8 662 67.2
arahy.Tifrunner.gnm1.ann1.57X5SD Arachis hypogaea HOM05D006559 ORTHO05D008867 2.0e-249 865.9 660 66.4
DCAR_002509 Daucus carota HOM05D006559 ORTHO05D008867 4.4e-249 864.8 662 66.3
Glyma.17G033200 Glycine max HOM05D006559 ORTHO05D008867 4.4e-249 864.8 664 66.7
RcHm_v2.0_Chr4g0424901 Rosa chinensis HOM05D006559 ORTHO05D008867 4.4e-249 864.8 663 65.3
arahy.Tifrunner.gnm1.ann1.Y9UCUD Arachis hypogaea HOM05D006559 ORTHO05D008867 5.7e-249 864.4 660 66.4
Eucgr.H04041 Eucalyptus grandis HOM05D006559 ORTHO05D008867 5.7e-249 864.4 651 65.7
Lalb_Chr07g0182081 Lupinus albus HOM05D006559 ORTHO05D008867 9.8e-249 863.6 656 66.9
ECA246G2012 Erigeron canadensis HOM05D006559 ORTHO05D008867 3.1e-247 858.6 668 65.7
Oeu032013.1 Olea europaea HOM05D006559 ORTHO05D008867 3.1e-247 858.6 642 68.1
SGA_v2.0_scaffold18G08402 Striga asiatica HOM05D006559 ORTHO05D008867 1.6e-246 856.3 655 64.9
AUR62039288 Chenopodium quinoa HOM05D006559 ORTHO05D008867 5.9e-246 854.4 698 61.9
Medtr4g122000 Medicago truncatula HOM05D006559 ORTHO05D008867 1.3e-245 853.2 659 64.8
Phvul.003G113900 Phaseolus vulgaris HOM05D006559 ORTHO05D008867 1.7e-245 852.8 659 66.0
Psat4g024080 Pisum sativum HOM05D006559 ORTHO05D008867 1.7e-245 852.8 662 65.0
Ciclev10004497m.g Citrus clementina HOM05D006559 ORTHO05D008867 5.6e-244 847.8 674 65.0
Nn3g21720 Nelumbo nucifera HOM05D006559 ORTHO05D008867 4.0e-242 841.6 642 66.8
FvH4_4g19640 Fragaria vesca HOM05D006559 ORTHO05D008867 6.8e-242 840.9 656 63.9
SalBow8G4902 Salvia bowleyana HOM05D006559 ORTHO05D008867 6.8e-242 840.9 660 64.5
AUR62016199 Chenopodium quinoa HOM05D006559 ORTHO05D008867 1.5e-241 839.7 748 57.6
MSTRG.3859 Avicennia marina HOM05D006559 ORTHO05D008867 3.4e-241 838.6 657 64.8
Lsat_1_v5_gn_6_116281 Lactuca sativa HOM05D006559 ORTHO05D008867 2.9e-240 835.5 663 64.4
Haze_11682 Corylus avellana HOM05D006559 ORTHO05D008867 1.2e-238 830.1 718 62.4
FAN12G1983 Fragaria x ananassa HOM05D006559 ORTHO05D008867 5.9e-238 827.8 668 62.4
Prupe.1G118000 Prunus persica HOM05D006559 ORTHO05D008867 5.9e-238 827.8 664 63.7
MELO3C006713.2 Cucumis melo HOM05D006559 ORTHO05D008867 3.9e-237 825.1 668 63.9
Sed0004607 Sechium edule HOM05D006559 ORTHO05D008867 5.0e-237 824.7 644 64.1
CsaV3_3G015150 Cucumis sativus L. HOM05D006559 ORTHO05D008867 1.5e-236 823.2 666 62.9
Aqoxy2G02735 Aquilegia oxysepala HOM05D006559 ORTHO05D008867 4.0e-234 815.1 658 63.1
TPR.G5276 Trifolium pratense HOM05D006559 ORTHO05D008867 2.0e-233 812.8 702 60.7
MBI18_g32021_MAGBIO Magnolia biondii HOM05D006559 ORTHO05D008867 2.4e-231 805.8 652 63.2
AT3G17030 Arabidopsis thaliana HOM05D006559 ORTHO05D008867 3.2e-231 805.4 660 62.0
PSO210G1317 Papaver somniferum HOM05D006559 ORTHO05D008867 1.2e-230 803.5 657 61.8
THA.LOC104820440 Tarenaya hassleriana HOM05D006559 ORTHO05D008867 6.0e-230 801.2 657 61.8
Lj6A690G72 Lonicera japonica HOM05D006559 ORTHO05D008867 3.0e-229 798.9 513 77.6
Thhalv10020210m.g Eutrema salsugineum HOM05D006559 ORTHO05D008867 1.4e-226 790.0 669 60.7
EL10Ac3g05493 Beta vulgaris HOM05D006559 ORTHO05D008867 4.0e-226 788.5 713 57.8
Sp3g15250 Schrenkiella parvula HOM05D006559 ORTHO05D008867 3.4e-225 785.4 679 59.6
Aa31LG8G4060 Aethionema arabicum HOM05D006559 ORTHO05D008867 2.9e-224 782.3 678 59.4
Actinidia40373 Actinidia chinensis HOM05D006559 ORTHO05D008867 4.9e-224 781.6 478 83.5
AL3G30010 Arabidopsis lyrata HOM05D006559 ORTHO05D008867 1.1e-223 780.4 679 59.9
Carub.0003s1678 Capsella rubella HOM05D006559 ORTHO05D008867 1.9e-223 779.6 677 60.6
A01p37300 Brassica napus HOM05D006559 ORTHO05D008867 3.3e-220 768.8 680 59.7
BcaC09g48654 Brassica carinata HOM05D006559 ORTHO05D008867 4.3e-220 768.5 677 59.1
BolC1t04694H Brassica oleracea HOM05D006559 ORTHO05D008867 7.3e-220 767.7 678 59.3
BraA01t03788Z Brassica rapa HOM05D006559 ORTHO05D008867 1.2e-219 766.9 680 59.6
Ah.13g071910 Amaranthus hybridus HOM05D006559 ORTHO05D008867 2.1e-219 766.1 668 59.6
C01p47240 Brassica napus HOM05D006559 ORTHO05D008867 1.1e-218 763.8 678 59.0
Duzib151G0228 Durio zibethinus HOM05D006559 ORTHO05D008867 8.4e-216 754.2 652 60.0
COL.COLO4_34624 Corchorus olitorius HOM05D006559 ORTHO05D008867 1.3e-213 746.9 659 59.3
HanXRQChr08g0236161 Helianthus annuus HOM05D006559 ORTHO05D008867 2.3e-213 746.1 652 61.2
Nitab4.5_0000169g0190 Nicotiana tabacum HOM05D006559 ORTHO05D008867 2.4e-210 736.1 524 71.6
FAN07G1421 Fragaria x ananassa HOM05D006559 ORTHO05D008867 1.1e-207 727.2 656 57.5
CiPaw.01G113700 Carya illinoinensis HOM05D006559 ORTHO05D008867 3.2e-207 725.7 516 70.9
ATR0796G144 Amborella trichopoda HOM05D006559 ORTHO05D008867 2.8e-203 712.6 637 57.0
Atru.chr4.3010 Acer truncatum HOM05D006559 ORTHO05D008867 1.7e-200 703.4 683 56.8
SHI00146 Sapria himalayana HOM05D006559 ORTHO05D008867 3.1e-194 682.6 659 56.1
Hma1.2p1_0078F.1_g039960 Hydrangea macrophylla HOM05D006559 ORTHO05D008867 2.8e-187 659.4 521 67.6
Os03g0832500 Oryza sativa ssp. japonica HOM05D006559 ORTHO05D008867 5.8e-185 651.7 641 53.7
SEGI_33199 Sequoiadendron giganteum HOM05D006559 ORTHO05D008867 3.2e-175 619.4 664 50.0
Zm00001eb063450 Zea mays HOM05D006559 ORTHO05D008867 1.5e-172 610.5 657 51.3
ClCG00G004240 Citrullus lanatus HOM05D006559 ORTHO05D008867 3.0e-165 586.3 533 60.6
unitig_32.g11851 Utricularia gibba HOM05D006559 ORTHO05D008867 4.1e-162 575.9 651 49.5
HPP92_015242 Vanilla planifolia HOM05D006559 ORTHO05D008867 1.3e-147 527.7 643 46.2
CARHR092280 Cardamine hirsuta HOM05D006559 ORTHO05D008867 1.9e-135 487.3 401 62.1
Mapoly0086s0053 Marchantia polymorpha HOM05D006559 ORTHO05D008867 3.3e-127 459.9 647 40.3
AagrBONN_evm.TU.Sc2ySwM_344.4908 Anthoceros agrestis HOM05D006559 ORTHO05D008867 1.2e-113 414.8 625 38.9
RcHm_v2.0_Chr4g0424931 Rosa chinensis HOM05D006559 ORTHO05D008867 2.8e-110 403.7 399 55.4
TAR365G1053 Trochodendron aralioides HOM05D006559 ORTHO05D008867 3.4e-92 343.6 239 71.1
SMO116G0303 Selaginella moellendorffii HOM05D006559 ORTHO05D008867 1.3e-80 305.1 458 40.8
SMO239G0200 Selaginella moellendorffii HOM05D006559 ORTHO05D008867 1.4e-77 295.0 545 36.9
TPR.G16835 Trifolium pratense HOM05D006559 ORTHO05D008867 5.5e-74 283.1 618 35.6
AUR62035935 Chenopodium quinoa HOM05D006559 ORTHO05D008867 5.9e-52 209.9 231 47.2
AUR62044438 Chenopodium quinoa HOM05D006559 ORTHO05D008867 1.2e-49 202.2 178 55.6
Hma1.2p1_0078F.1_g039980 Hydrangea macrophylla HOM05D006559 ORTHO05D008867 1.4e-48 198.7 141 70.9
SMO195G0016 Selaginella moellendorffii HOM05D006559 ORTHO05D008867 2.3e-40 171.4 405 32.8
Actinidia27128 Actinidia chinensis HOM05D006559 ORTHO05D008867 7.4e-39 166.4 98 81.6
AUR62038912 Chenopodium quinoa HOM05D006559 ORTHO05D008867 6.5e-35 153.3 232 37.5
Lj6A690T73 Lonicera japonica HOM05D006559 ORTHO05D008867 2.0e-31 141.7 94 68.1
Cc03_g00880 Coffea canephora HOM05D006559 ORTHO05D008867 1.4e-29 135.6 87 75.9
MBI14_g17950_MAGBIO Magnolia biondii HOM05D006559 ORTHO05D241410 2.2e-27 128.3 144 52.1
RcHm_v2.0_Chr4g0425081 Rosa chinensis HOM05D006559 ORTHO05D008867 6.5e-27 126.7 113 54.9
RcHm_v2.0_Chr4g0425061 Rosa chinensis HOM05D006559 ORTHO05D008867 1.2e-23 115.9 117 55.6
RcHm_v2.0_Chr3g0458131 Rosa chinensis HOM05D006559 ORTHO05D050582 4.7e-17 94.0 74 66.2
RcHm_v2.0_Chr4g0425071 Rosa chinensis HOM05D006559 ORTHO05D343184 5.2e-16 90.5 65 64.6
BcaB04g20870 Brassica carinata HOM05D006559 ORTHO05D019951 3.4e-15 87.8 88 54.5
Potri.008G105850 Populus trichocarpa HOM05D006559 ORTHO05D050582 6.3e-14 83.6 70 58.6
BcaC01g05501 Brassica carinata HOM05D006559 ORTHO05D019951 2.0e-12 78.6 90 51.1


User provided reference genes

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