Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim04G0222600 Rhododendron simsii HOM05D000751 ORTHO05D037984 8.5e-207 723.4 355 100.0
Rhsim13G0060500 Rhododendron simsii HOM05D000751 ORTHO05D000889 5.1e-159 564.7 398 77.1
vmacro02885 Vaccinium macrocarpon HOM05D000751 ORTHO05D000889 2.5e-126 456.1 384 64.1
Actinidia23844 Actinidia chinensis HOM05D000751 ORTHO05D000889 1.2e-54 218.0 384 43.5
Hma1.2p1_0119F.1_g056900 Hydrangea macrophylla HOM05D000751 ORTHO05D000889 6.8e-47 192.2 352 39.2
Rhsim01G0242400 Rhododendron simsii HOM05D000751 ORTHO05D000889 1.7e-45 187.6 439 38.0
Actinidia11617 Actinidia chinensis HOM05D000751 ORTHO05D037984 1.1e-39 168.3 290 41.0
CSS0006115 Camellia sinensis var. sinensis HOM05D000751 ORTHO05D000889 1.8e-39 167.5 211 50.7
vmacro14635 Vaccinium macrocarpon HOM05D000751 ORTHO05D000889 4.0e-39 166.4 353 38.5
GSVIVG01024577001 Vitis vinifera HOM05D000751 ORTHO05D000889 1.8e-31 141.0 405 32.1
Cc01_g15240 Coffea canephora HOM05D000751 ORTHO05D000889 2.4e-31 140.6 387 33.9
Nitab4.5_0002091g0060 Nicotiana tabacum HOM05D000751 ORTHO05D000889 1.1e-28 131.7 406 32.5
Peaxi162Scf00390g00325 Petunia axillaris HOM05D000751 ORTHO05D000889 1.9e-28 131.0 387 34.6
TAR369G0772 Trochodendron aralioides HOM05D000751 ORTHO05D000889 2.4e-28 130.6 425 32.9
Lj2C1100G3 Lonicera japonica HOM05D000751 ORTHO05D000889 3.2e-28 130.2 300 37.3
Nitab4.5_0002759g0080 Nicotiana tabacum HOM05D000751 ORTHO05D000889 1.6e-27 127.9 392 32.7
Sopen06g033860 Solanum pennellii HOM05D000751 ORTHO05D000889 6.0e-27 125.9 319 34.2
TAR633G1193 Trochodendron aralioides HOM05D000751 ORTHO05D000889 1.3e-26 124.8 246 39.0
CAN.G404.1 Capsicum annuum HOM05D000751 ORTHO05D000889 1.7e-26 124.4 354 31.9
Solyc06g082480.3 Solanum lycopersicum HOM05D000751 ORTHO05D000889 3.3e-25 120.2 320 34.1
SalBow2G1791 Salvia bowleyana HOM05D000751 ORTHO05D000889 9.6e-25 118.6 301 33.2
PGSC0003DMG400030464 Solanum tuberosum HOM05D000751 ORTHO05D000889 3.6e-24 116.7 317 33.8
SGA_v2.0_scaffold120G32984 Striga asiatica HOM05D000751 ORTHO05D000889 3.6e-24 116.7 397 30.5
Nitab4.5_0000002g0240 Nicotiana tabacum HOM05D000751 ORTHO05D000889 4.0e-23 113.2 336 32.1
Nitab4.5_0001868g0010 Nicotiana tabacum HOM05D000751 ORTHO05D000889 5.3e-23 112.8 327 33.0
Nn5g26870 Nelumbo nucifera HOM05D000751 ORTHO05D000889 1.2e-22 111.7 237 35.9
TAR623G0489 Trochodendron aralioides HOM05D000751 ORTHO05D000889 2.0e-22 110.9 382 30.1
Psat2g051200 Pisum sativum HOM05D000751 ORTHO05D000889 4.4e-22 109.8 195 37.9
Migut.D00826 Erythranthe guttata HOM05D000751 ORTHO05D000889 7.6e-22 109.0 313 29.4
QL01p025054 Quercus lobata HOM05D000751 ORTHO05D000889 9.9e-22 108.6 263 35.4
Lalb_Chr10g0103781 Lupinus albus HOM05D000751 ORTHO05D000889 3.8e-21 106.7 296 33.1
arahy.Tifrunner.gnm1.ann1.G52PLI Arachis hypogaea HOM05D000751 ORTHO05D000889 6.4e-21 105.9 235 37.0
arahy.Tifrunner.gnm1.ann1.LCX1I7 Arachis hypogaea HOM05D000751 ORTHO05D000889 8.4e-21 105.5 257 35.4
Oeu027178.1 Olea europaea HOM05D000751 ORTHO05D000889 1.1e-20 105.1 359 31.2
Glyma.14G203800 Glycine max HOM05D000751 ORTHO05D000889 1.9e-20 104.4 172 40.7
Phvul.008G248100 Phaseolus vulgaris HOM05D000751 ORTHO05D000889 1.9e-20 104.4 293 32.4
TPR.G25756 Trifolium pratense HOM05D000751 ORTHO05D000889 2.4e-20 104.0 243 35.4
Ca_05703_v3 Cicer arietinum L. HOM05D000751 ORTHO05D000889 5.4e-20 102.8 207 35.7
Lalb_Chr04g0251761 Lupinus albus HOM05D000751 ORTHO05D000889 7.1e-20 102.4 311 30.5
LjContig00141g0016337 Lotus japonicus HOM05D000751 ORTHO05D000889 9.3e-20 102.1 241 34.9
Sabra19G0126500 Salix brachista HOM05D000751 ORTHO05D000889 1.2e-19 101.7 246 32.9
Oeu011376.1 Olea europaea HOM05D000751 ORTHO05D000889 2.1e-19 100.9 373 29.8
Cfa011820 Carpinus fangiana HOM05D000751 ORTHO05D000889 4.6e-19 99.8 397 29.5
Glyma.02G235800 Glycine max HOM05D000751 ORTHO05D000889 6.0e-19 99.4 172 39.0
VMungo0647G1565 Vigna mungo HOM05D000751 ORTHO05D000889 7.9e-19 99.0 297 32.0
Lalb_Chr17g0345611 Lupinus albus HOM05D000751 ORTHO05D000889 1.0e-18 98.6 158 38.6
Haze_24457 Corylus avellana HOM05D000751 ORTHO05D000889 3.0e-18 97.1 392 29.1
ECA248G1578 Erigeron canadensis HOM05D000751 ORTHO05D000889 5.1e-18 96.3 337 29.4
Potri.019G128800 Populus trichocarpa HOM05D000751 ORTHO05D000889 5.1e-18 96.3 186 35.5
Peaxi162Scf00095g01214 Petunia axillaris HOM05D000751 ORTHO05D000889 1.1e-17 95.1 408 29.2
PGR031G2288 Punica granatum HOM05D000751 ORTHO05D000889 2.5e-17 94.0 216 36.6
Haze_21149 Corylus avellana HOM05D000751 ORTHO05D000889 5.6e-17 92.8 169 40.2
MSTRG.17912 Avicennia marina HOM05D000751 ORTHO05D000889 9.6e-17 92.0 322 28.3
Medtr5g075260 Medicago truncatula HOM05D000751 ORTHO05D000889 9.6e-17 92.0 213 33.8
SGA_v2.0_scaffold77G25363 Striga asiatica HOM05D000751 ORTHO05D000889 9.6e-17 92.0 304 31.2
FAN09G1566 Fragaria x ananassa HOM05D000751 ORTHO05D000889 2.1e-16 90.9 182 36.8
DCAR_025529 Daucus carota HOM05D000751 ORTHO05D000889 2.8e-16 90.5 272 29.4
FvH4_6g10110 Fragaria vesca HOM05D000751 ORTHO05D000889 6.2e-16 89.4 182 35.7
FAN05G0807 Fragaria x ananassa HOM05D000751 ORTHO05D000889 8.1e-16 89.0 182 36.3
FAN05G3756 Fragaria x ananassa HOM05D000751 ORTHO05D000889 8.1e-16 89.0 182 36.3
Actinidia29041 Actinidia chinensis HOM05D000751 ORTHO05D000889 1.4e-15 88.2 289 30.8
FAN14G5618 Fragaria x ananassa HOM05D000751 ORTHO05D000889 1.4e-15 88.2 182 36.3
COL.COLO4_16550 Corchorus olitorius HOM05D000751 ORTHO05D000889 1.8e-15 87.8 219 36.5
ATR0681G301 Amborella trichopoda HOM05D000751 ORTHO05D000889 3.1e-15 87.0 186 34.9
Cfa017054 Carpinus fangiana HOM05D000751 ORTHO05D000889 9.0e-15 85.5 171 37.4
Dinv25326 Davidia involucrata HOM05D000751 ORTHO05D000889 9.0e-15 85.5 334 29.0
ClCG04G006390 Citrullus lanatus HOM05D000751 ORTHO05D000889 1.5e-14 84.7 313 28.1
Thecc.09G362800 Theobroma cacao HOM05D000751 ORTHO05D000889 2.6e-14 84.0 364 28.0
QL07p032538 Quercus lobata HOM05D000751 ORTHO05D000889 4.5e-14 83.2 265 33.2
CiPaw.09G219700 Carya illinoinensis HOM05D000751 ORTHO05D000889 5.8e-14 82.8 263 30.8
FAN02G3208 Fragaria x ananassa HOM05D000751 ORTHO05D000889 5.8e-14 82.8 182 34.6
Sabra13G0124800 Salix brachista HOM05D000751 ORTHO05D000889 7.6e-14 82.4 298 28.9
MSTRG.21253 Avicennia marina HOM05D000751 ORTHO05D000889 9.9e-14 82.0 379 29.8
MD04G1172800 Malus domestica HOM05D000751 ORTHO05D000889 1.3e-13 81.6 362 30.4
Potri.013G154900 Populus trichocarpa HOM05D000751 ORTHO05D000889 1.3e-13 81.6 293 29.0
Thecc.04G153800 Theobroma cacao HOM05D000751 ORTHO05D000889 1.3e-13 81.6 223 34.1
Gohir.D02G004500 Gossypium hirsutum HOM05D000751 ORTHO05D000889 1.7e-13 81.3 246 32.9
MD12G1186100 Malus domestica HOM05D000751 ORTHO05D000889 1.7e-13 81.3 325 29.8
CiPaw.10G164500 Carya illinoinensis HOM05D000751 ORTHO05D000889 2.2e-13 80.9 246 32.9
Lsat_1_v5_gn_5_174841 Lactuca sativa HOM05D000751 ORTHO05D000889 2.2e-13 80.9 213 33.3
Duzib212G0506 Durio zibethinus HOM05D000751 ORTHO05D000889 2.9e-13 80.5 213 34.3
CANSAT35G1451 Cannabis sativa HOM05D000751 ORTHO05D000889 3.8e-13 80.1 373 27.9
Manes.08G174000 Manihot esculenta HOM05D000751 ORTHO05D000889 3.8e-13 80.1 244 30.7
Eucgr.A00717 Eucalyptus grandis HOM05D000751 ORTHO05D000889 8.4e-13 79.0 181 36.5
CsaV3_4G027110 Cucumis sativus L. HOM05D000751 ORTHO05D000889 1.4e-12 78.2 223 31.4
Prupe.6G291600 Prunus persica HOM05D000751 ORTHO05D000889 2.4e-12 77.4 304 30.6
Sed0006675 Sechium edule HOM05D000751 ORTHO05D000889 3.2e-12 77.0 322 29.2
Duzib268G1287 Durio zibethinus HOM05D000751 ORTHO05D000889 4.2e-12 76.6 186 36.0
RcHm_v2.0_Chr3g0460811 Rosa chinensis HOM05D000751 ORTHO05D000889 4.2e-12 76.6 258 29.8
Actinidia11516 Actinidia chinensis HOM05D000751 ORTHO05D000889 9.3e-12 75.5 189 33.9
Manes.09G116700 Manihot esculenta HOM05D000751 ORTHO05D000889 9.3e-12 75.5 220 31.4
MBI15_g40104_MAGBIO Magnolia biondii HOM05D000751 ORTHO05D000889 1.2e-11 75.1 272 29.8
MELO3C025212.2 Cucumis melo HOM05D000751 ORTHO05D000889 1.6e-11 74.7 217 31.3
Gorai.005G005100 Gossypium raimondii HOM05D000751 ORTHO05D000889 1.6e-11 74.7 303 30.0
Duzib151G0240 Durio zibethinus HOM05D000751 ORTHO05D000889 3.5e-11 73.6 226 33.6
GSVIVG01030201001 Vitis vinifera HOM05D000751 ORTHO05D000889 3.5e-11 73.6 332 27.7
HanXRQChr01g0012891 Helianthus annuus HOM05D000751 ORTHO05D000889 4.6e-11 73.2 248 28.2
GSVIVG01001781001 Vitis vinifera HOM05D000751 ORTHO05D000889 6.0e-11 72.8 83 45.8
Migut.N00733 Erythranthe guttata HOM05D000751 ORTHO05D000889 7.9e-11 72.4 297 29.3
Dinv11375 Davidia involucrata HOM05D000751 ORTHO05D000889 1.3e-10 71.6 266 29.3
HanXRQChr11g0338291 Helianthus annuus HOM05D000751 ORTHO05D000889 1.3e-10 71.6 276 29.7
CAN.G5.22 Capsicum annuum HOM05D000751 ORTHO05D000889 1.8e-10 71.2 308 27.9
Prupe.6G042500 Prunus persica HOM05D000751 ORTHO05D000889 1.8e-10 71.2 145 33.8
Atru.chr8.2384 Acer truncatum HOM05D000751 ORTHO05D000889 3.0e-10 70.5 237 31.2
Gohir.A02G004100 Gossypium hirsutum HOM05D000751 ORTHO05D000889 3.0e-10 70.5 295 28.1
Dinv28724 Davidia involucrata HOM05D000751 ORTHO05D000889 3.9e-10 70.1 78 55.1
Hund03727 Selenicereus undatus HOM05D000751 ORTHO05D000889 6.7e-10 69.3 224 32.6
MD11G1054900 Malus domestica HOM05D000751 ORTHO05D000889 8.7e-10 68.9 146 36.3
Ciclev10011044m.g Citrus clementina HOM05D000751 ORTHO05D000889 1.1e-09 68.6 161 34.8
Gohir.D02G004400 Gossypium hirsutum HOM05D000751 ORTHO05D000889 1.5e-09 68.2 232 32.8
Aqoxy2G00716 Aquilegia oxysepala HOM05D000751 ORTHO05D000889 1.9e-09 67.8 230 31.3
Actinidia20786 Actinidia chinensis HOM05D000751 ORTHO05D000889 3.3e-09 67.0 171 33.3
Ah.08g209610 Amaranthus hybridus HOM05D000751 ORTHO05D000889 3.3e-09 67.0 239 27.6
Hma1.2p1_1052F.1_g252300 Hydrangea macrophylla HOM05D000751 ORTHO05D000889 3.3e-09 67.0 362 28.5
TWI31G0313 Tripterygium wilfordii HOM05D000751 ORTHO05D000889 3.3e-09 67.0 257 27.6
PSO339G3673 Papaver somniferum HOM05D000751 ORTHO05D000889 7.4e-09 65.9 158 36.7
Peaxi162Scf00732g00435 Petunia axillaris HOM05D000751 ORTHO05D000889 7.4e-09 65.9 169 33.1
CDE12G0085 Ceratophyllum demersum HOM05D000751 ORTHO05D000889 1.6e-08 64.7 257 28.4
unitig_26.g10221 Utricularia gibba HOM05D000751 ORTHO05D000889 1.6e-08 64.7 382 24.3
Oeu057993.1 Olea europaea HOM05D000751 ORTHO05D000889 3.7e-08 63.5 164 37.2
CDE04G2975 Ceratophyllum demersum HOM05D000751 ORTHO05D000889 4.8e-08 63.2 182 30.2
Gohir.A02G004000 Gossypium hirsutum HOM05D000751 ORTHO05D000889 8.1e-08 62.4 233 30.5
Gorai.005G005000 Gossypium raimondii HOM05D000751 ORTHO05D000889 8.1e-08 62.4 367 27.5
Manes.18G139200 Manihot esculenta HOM05D000751 ORTHO05D000889 8.1e-08 62.4 245 28.2
PSO384G3107 Papaver somniferum HOM05D000751 ORTHO05D000889 8.1e-08 62.4 266 29.3
Oeu064679.4 Olea europaea HOM05D000751 ORTHO05D000889 1.1e-07 62.0 82 45.1
Cpa.g.sc86.39 Carica papaya HOM05D000751 ORTHO05D000889 1.4e-07 61.6 245 27.8
SHI19250 Sapria himalayana HOM05D000751 ORTHO05D000889 2.4e-07 60.8 165 35.8
Lsat_1_v5_gn_9_14000 Lactuca sativa HOM05D000751 ORTHO05D000889 3.1e-07 60.5 162 31.5
Ah.15g090140 Amaranthus hybridus HOM05D000751 ORTHO05D000889 4.0e-07 60.1 150 30.7
AL5G32060 Arabidopsis lyrata HOM05D000751 ORTHO05D000889 1.2e-06 58.5 165 30.3
EL10Ac7g17072 Beta vulgaris HOM05D000751 ORTHO05D000889 1.5e-06 58.2 234 27.4
Solyc09g018160.3 Solanum lycopersicum HOM05D000751 ORTHO05D000889 2.0e-06 57.8 165 31.5
Carub.0005s1798 Capsella rubella HOM05D000751 ORTHO05D000889 2.6e-06 57.4 164 30.5
Sopen09g010800 Solanum pennellii HOM05D000751 ORTHO05D000889 2.6e-06 57.4 165 31.5
TWI53G1535 Tripterygium wilfordii HOM05D000751 ORTHO05D000889 2.6e-06 57.4 210 27.6
Oeu024001.1 Olea europaea HOM05D000751 ORTHO05D000889 4.5e-06 56.6 145 33.8
TWI74G1085 Tripterygium wilfordii HOM05D000751 ORTHO05D000889 1.0e-05 55.5 171 32.7


User provided reference genes

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