Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim04G0216900 Rhododendron simsii HOM05D005247 ORTHO05D006571 2.1e-280 968.4 484 100.0
vmacro08197 Vaccinium macrocarpon HOM05D005247 ORTHO05D006571 1.1e-183 647.1 508 68.7
CSS0036429 Camellia sinensis var. sinensis HOM05D005247 ORTHO05D006571 1.0e-162 577.4 483 65.0
Actinidia23422 Actinidia chinensis HOM05D005247 ORTHO05D006571 1.4e-159 567.0 483 63.4
QL06p007567 Quercus lobata HOM05D005247 ORTHO05D006571 3.3e-145 519.2 328 76.8
Hma1.2p1_0078F.1_g040780 Hydrangea macrophylla HOM05D005247 ORTHO05D006571 8.2e-144 514.6 487 56.3
CiPaw.02G086000 Carya illinoinensis HOM05D005247 ORTHO05D006571 6.1e-139 498.4 325 72.6
Prupe.1G141100 Prunus persica HOM05D005247 ORTHO05D006571 1.4e-138 497.3 331 74.9
MD13G1173000 Malus domestica HOM05D005247 ORTHO05D006571 7.4e-137 491.5 332 73.2
MD16G1174400 Malus domestica HOM05D005247 ORTHO05D006571 1.1e-135 487.6 328 74.1
vmacro08194 Vaccinium macrocarpon HOM05D005247 ORTHO05D006571 5.3e-135 485.3 455 60.4
Thecc.04G278500 Theobroma cacao HOM05D005247 ORTHO05D006571 1.3e-133 480.7 401 60.8
Lalb_Chr12g0196461 Lupinus albus HOM05D005247 ORTHO05D006571 2.5e-132 476.5 321 70.1
Nitab4.5_0006478g0050 Nicotiana tabacum HOM05D005247 ORTHO05D006571 4.2e-132 475.7 358 66.2
Solyc07g041930.3 Solanum lycopersicum HOM05D005247 ORTHO05D006571 9.4e-132 474.6 328 69.8
Phvul.003G101400 Phaseolus vulgaris HOM05D005247 ORTHO05D006571 2.1e-131 473.4 318 71.1
Cfa015350 Carpinus fangiana HOM05D005247 ORTHO05D006571 4.7e-131 472.2 337 68.8
Nitab4.5_0009436g0020 Nicotiana tabacum HOM05D005247 ORTHO05D006571 4.7e-131 472.2 373 63.0
RcHm_v2.0_Chr4g0421281 Rosa chinensis HOM05D005247 ORTHO05D006571 7.9e-131 471.5 328 72.3
Nitab4.5_0001357g0080 Nicotiana tabacum HOM05D005247 ORTHO05D006571 1.8e-130 470.3 334 69.2
GSVIVG01017794001 Vitis vinifera HOM05D005247 ORTHO05D006571 1.8e-130 470.3 314 72.9
CAN.G311.32 Capsicum annuum HOM05D005247 ORTHO05D006571 2.3e-130 469.9 327 68.5
Psat5g125320 Pisum sativum HOM05D005247 ORTHO05D006571 2.3e-130 469.9 321 69.5
Sopen07g021430 Solanum pennellii HOM05D005247 ORTHO05D006571 2.3e-130 469.9 342 67.8
FAN07G0437 Fragaria x ananassa HOM05D005247 ORTHO05D006571 3.0e-130 469.5 330 72.7
Glyma.17G023300 Glycine max HOM05D005247 ORTHO05D006571 6.7e-130 468.4 318 70.1
Glyma.07G251000 Glycine max HOM05D005247 ORTHO05D006571 8.8e-130 468.0 318 70.4
Duzib151G0039 Durio zibethinus HOM05D005247 ORTHO05D006571 1.1e-129 467.6 327 68.2
Nitab4.5_0000343g0170 Nicotiana tabacum HOM05D005247 ORTHO05D006571 1.5e-129 467.2 324 71.0
CANSAT78G0941 Cannabis sativa HOM05D005247 ORTHO05D006571 5.7e-129 465.3 333 68.8
FvH4_4g17340 Fragaria vesca HOM05D005247 ORTHO05D006571 7.4e-129 464.9 330 72.1
DCAR_024549 Daucus carota HOM05D005247 ORTHO05D006571 2.2e-128 463.4 307 73.3
Medtr3g069790 Medicago truncatula HOM05D005247 ORTHO05D006571 2.8e-128 463.0 320 67.5
Cc03_g02260 Coffea canephora HOM05D005247 ORTHO05D006571 4.8e-128 462.2 347 64.8
TWI09G0062 Tripterygium wilfordii HOM05D005247 ORTHO05D006571 6.3e-128 461.8 320 67.2
Gohir.A09G233900 Gossypium hirsutum HOM05D005247 ORTHO05D006571 8.2e-128 461.5 326 67.5
VMungo1215G2055 Vigna mungo HOM05D005247 ORTHO05D006571 1.8e-127 460.3 318 69.8
FAN17G1560 Fragaria x ananassa HOM05D005247 ORTHO05D006571 3.1e-127 459.5 338 70.4
Gorai.006G257600 Gossypium raimondii HOM05D005247 ORTHO05D006571 7.0e-127 458.4 326 67.5
Manes.15G016200 Manihot esculenta HOM05D005247 ORTHO05D006571 9.1e-127 458.0 318 68.2
Atru.chr4.2766 Acer truncatum HOM05D005247 ORTHO05D006571 2.6e-126 456.4 368 62.0
Lj4g0024405 Lotus japonicus HOM05D005247 ORTHO05D006571 2.6e-126 456.4 320 68.1
TPR.G28788 Trifolium pratense HOM05D005247 ORTHO05D006571 3.4e-126 456.1 314 67.8
Peaxi162Scf00127g00146 Petunia axillaris HOM05D005247 ORTHO05D006571 5.9e-126 455.3 305 70.2
Eucgr.H03774 Eucalyptus grandis HOM05D005247 ORTHO05D006571 3.8e-125 452.6 325 66.5
Ca_21545_v3 Cicer arietinum L. HOM05D005247 ORTHO05D006571 2.5e-124 449.9 302 69.2
FAN12G4219 Fragaria x ananassa HOM05D005247 ORTHO05D006571 2.5e-124 449.9 356 67.1
TPR.G29803 Trifolium pratense HOM05D005247 ORTHO05D006571 4.2e-124 449.1 312 68.3
TAR362G0112 Trochodendron aralioides HOM05D005247 ORTHO05D006571 4.2e-124 449.1 303 71.3
MSTRG.21809 Avicennia marina HOM05D005247 ORTHO05D006571 5.5e-124 448.7 341 63.9
Gohir.D09G234700 Gossypium hirsutum HOM05D005247 ORTHO05D006571 9.4e-124 448.0 326 66.6
Potri.008G205300 Populus trichocarpa HOM05D005247 ORTHO05D006571 1.4e-122 444.1 325 64.3
ECA234G2791 Erigeron canadensis HOM05D005247 ORTHO05D006571 1.8e-122 443.7 322 65.2
Nn7g38324 Nelumbo nucifera HOM05D005247 ORTHO05D006571 3.9e-122 442.6 322 64.3
Ciclev10005079m.g Citrus clementina HOM05D005247 ORTHO05D006571 2.6e-121 439.9 290 71.7
Aqoxy5G00647 Aquilegia oxysepala HOM05D005247 ORTHO05D006571 9.7e-121 438.0 339 61.9
PGR142G1936 Punica granatum HOM05D005247 ORTHO05D006571 1.7e-120 437.2 326 64.7
Carub.0007s2616 Capsella rubella HOM05D005247 ORTHO05D006571 1.1e-119 434.5 363 58.1
Lsat_1_v5_gn_4_34220 Lactuca sativa HOM05D005247 ORTHO05D006571 1.8e-119 433.7 320 65.0
Haze_01257 Corylus avellana HOM05D005247 ORTHO05D006571 4.1e-119 432.6 395 58.5
THA.LOC104802559 Tarenaya hassleriana HOM05D005247 ORTHO05D006571 5.3e-119 432.2 328 62.5
Sc13g0003580 Simmondsia chinensis HOM05D005247 ORTHO05D006571 2.0e-118 430.3 319 62.7
HanXRQChr17g0562111 Helianthus annuus HOM05D005247 ORTHO05D006571 3.5e-118 429.5 326 63.2
CARHR290040 Cardamine hirsuta HOM05D005247 ORTHO05D006571 5.9e-118 428.7 363 57.6
Dinv38319 Davidia involucrata HOM05D005247 ORTHO05D006571 5.9e-118 428.7 261 79.7
AT4G15640 Arabidopsis thaliana HOM05D005247 ORTHO05D006571 3.8e-117 426.0 350 58.9
AL7G39790 Arabidopsis lyrata HOM05D005247 ORTHO05D006571 5.0e-117 425.6 327 61.5
Aa31LG9G1800 Aethionema arabicum HOM05D005247 ORTHO05D006571 3.2e-116 422.9 359 57.9
Sp3g19500 Schrenkiella parvula HOM05D005247 ORTHO05D006571 9.4e-116 421.4 342 60.2
BcaB06g26247 Brassica carinata HOM05D005247 ORTHO05D006571 2.7e-115 419.9 324 62.3
BcaC05g28162 Brassica carinata HOM05D005247 ORTHO05D006571 3.6e-115 419.5 352 59.1
C05p41980 Brassica napus HOM05D005247 ORTHO05D006571 3.6e-115 419.5 352 59.1
AT3G21465 Arabidopsis thaliana HOM05D005247 ORTHO05D006571 4.7e-115 419.1 324 61.7
A05p27200 Brassica napus HOM05D005247 ORTHO05D006571 8.0e-115 418.3 353 58.6
Cpa.g.sc16.124 Carica papaya HOM05D005247 ORTHO05D006571 8.0e-115 418.3 303 68.0
arahy.Tifrunner.gnm1.ann1.8Y06GW Arachis hypogaea HOM05D005247 ORTHO05D006571 1.8e-114 417.2 322 62.4
AUR62040732 Chenopodium quinoa HOM05D005247 ORTHO05D006571 2.3e-114 416.8 299 64.9
EL10Ac3g06569 Beta vulgaris HOM05D005247 ORTHO05D006571 4.0e-114 416.0 299 65.9
BolC5t32932H Brassica oleracea HOM05D005247 ORTHO05D006571 8.8e-114 414.8 328 61.3
SGA_v2.0_scaffold89G27537 Striga asiatica HOM05D005247 ORTHO05D006571 8.8e-114 414.8 326 62.3
AL3G35540 Arabidopsis lyrata HOM05D005247 ORTHO05D006571 1.2e-113 414.5 309 62.8
BraA05t21609Z Brassica rapa HOM05D005247 ORTHO05D006571 1.2e-113 414.5 357 57.7
arahy.Tifrunner.gnm1.ann1.A4UT9N Arachis hypogaea HOM05D005247 ORTHO05D006571 2.0e-113 413.7 322 62.4
Thhalv10025397m.g Eutrema salsugineum HOM05D005247 ORTHO05D006571 3.3e-113 412.9 323 60.7
AUR62043783 Chenopodium quinoa HOM05D005247 ORTHO05D006571 2.2e-112 410.2 299 63.9
Sp7g13890 Schrenkiella parvula HOM05D005247 ORTHO05D006571 2.8e-112 409.8 327 59.3
Carub.0003s2149 Capsella rubella HOM05D005247 ORTHO05D006571 3.7e-112 409.5 335 59.7
PSO541G1846 Papaver somniferum HOM05D005247 ORTHO05D006571 1.8e-111 407.1 322 60.9
Migut.N00115 Erythranthe guttata HOM05D005247 ORTHO05D006571 2.4e-111 406.8 322 61.8
FAN12G3211 Fragaria x ananassa HOM05D005247 ORTHO05D006571 9.1e-111 404.8 332 64.2
Ah.13g074520 Amaranthus hybridus HOM05D005247 ORTHO05D006571 5.9e-110 402.1 300 60.7
Hma1.2p1_3003F.1_g331535 Hydrangea macrophylla HOM05D005247 ORTHO05D006571 5.9e-110 402.1 336 62.2
PSO675G0879 Papaver somniferum HOM05D005247 ORTHO05D006571 2.5e-108 396.7 319 59.6
Dinv44420 Davidia involucrata HOM05D005247 ORTHO05D006571 4.7e-107 392.5 223 83.4
Os07g0668200 Oryza sativa ssp. japonica HOM05D005247 ORTHO05D006571 4.7e-107 392.5 306 61.8
SGA_v2.0_scaffold175G39318 Striga asiatica HOM05D005247 ORTHO05D006571 8.0e-107 391.7 332 58.7
CsaV3_3G014210 Cucumis sativus L. HOM05D005247 ORTHO05D006571 3.0e-106 389.8 318 59.4
Zm00001eb330100 Zea mays HOM05D005247 ORTHO05D006571 2.0e-105 387.1 312 60.3
TAR633G1275 Trochodendron aralioides HOM05D005247 ORTHO05D006571 2.8e-104 383.3 258 69.8
ClCG05G005860 Citrullus lanatus HOM05D005247 ORTHO05D006571 3.7e-104 382.9 318 57.9
unitig_748.g7195 Utricularia gibba HOM05D005247 ORTHO05D006571 9.5e-100 368.2 324 55.2
Sed0017520 Sechium edule HOM05D005247 ORTHO05D006571 2.1e-99 367.1 318 57.2
Thhalv10021000m.g Eutrema salsugineum HOM05D005247 ORTHO05D006571 1.8e-98 364.0 308 58.1
ATR0706G238 Amborella trichopoda HOM05D005247 ORTHO05D006571 2.0e-97 360.5 326 54.0
BolC8t48291H Brassica oleracea HOM05D005247 ORTHO05D006571 1.6e-86 324.3 336 50.9
MELO3C006614.2 Cucumis melo HOM05D005247 ORTHO05D006571 2.8e-83 313.5 235 61.7
BcaB04g18303 Brassica carinata HOM05D005247 ORTHO05D006571 6.2e-83 312.4 228 63.6
Eucgr.H03753 Eucalyptus grandis HOM05D005247 ORTHO05D006571 2.1e-78 297.4 236 59.7
Atru.chr4.2761 Acer truncatum HOM05D005247 ORTHO05D006571 2.1e-75 287.3 244 57.8
Hund20585 Selenicereus undatus HOM05D005247 ORTHO05D006571 2.8e-75 287.0 203 64.0
Psat4g226360 Pisum sativum HOM05D005247 ORTHO05D006571 3.6e-75 286.6 318 50.3
COL.COLO4_13921 Corchorus olitorius HOM05D005247 ORTHO05D006571 6.2e-75 285.8 299 50.8
Sabra08G0156600 Salix brachista HOM05D005247 ORTHO05D006571 8.1e-75 285.4 207 63.3
Lj6A670T87 Lonicera japonica HOM05D005247 ORTHO05D006571 5.1e-69 266.2 415 42.9
RcHm_v2.0_Chr4g0421901 Rosa chinensis HOM05D005247 ORTHO05D006571 1.2e-57 228.4 189 60.3
SHI00299 Sapria himalayana HOM05D005247 ORTHO05D000987 1.8e-50 204.5 264 42.4
BraA08t33173Z Brassica rapa HOM05D005247 ORTHO05D006571 4.8e-43 179.9 122 68.0
Eucgr.C02045 Eucalyptus grandis HOM05D005247 ORTHO05D006571 6.2e-43 179.5 132 63.6
HPP92_013697 Vanilla planifolia HOM05D005247 ORTHO05D006571 2.7e-38 164.1 181 44.8
Sabra08G0156700 Salix brachista HOM05D005247 ORTHO05D006571 5.1e-37 159.8 123 62.6
Psat5g177080 Pisum sativum HOM05D005247 ORTHO05D006571 2.5e-36 157.5 174 46.0
Mapoly0002s0143 Marchantia polymorpha HOM05D005247 ORTHO05D006571 2.8e-35 154.1 296 29.4
Pp3c14_15200 Physcomitrium patens HOM05D005247 ORTHO05D006571 3.4e-33 147.1 319 30.4
Psat6g103040 Pisum sativum HOM05D005247 ORTHO05D006571 9.7e-28 129.0 76 76.3
RcHm_v2.0_Chr4g0421891 Rosa chinensis HOM05D005247 ORTHO05D006571 9.7e-28 129.0 86 76.7
Rhsim02G0224900 Rhododendron simsii HOM05D000003 ORTHO05D000006 3.1e-26 124.0 131 52.7
AagrBONN_evm.TU.Sc2ySwM_228.2885 Anthoceros agrestis HOM05D005247 ORTHO05D006571 9.0e-26 122.5 233 33.0
SEGI_33954 Sequoiadendron giganteum HOM05D005247 ORTHO05D000001 9.0e-26 122.5 141 42.6
Actinidia40231 Actinidia chinensis HOM05D005247 ORTHO05D006571 5.9e-25 119.8 88 68.2
Eucgr.F02603 Eucalyptus grandis HOM05D005247 ORTHO05D006571 5.0e-24 116.7 77 68.8
CAN.G640.20 Capsicum annuum HOM05D005247 ORTHO05D006571 1.4e-23 115.2 111 54.1
SMO202G0041 Selaginella moellendorffii HOM05D005247 ORTHO05D006571 1.6e-22 111.7 248 30.2
Eucgr.H03759 Eucalyptus grandis HOM05D005247 ORTHO05D006571 3.9e-21 107.1 93 59.1
BcaC07g37894 Brassica carinata HOM05D005247 ORTHO05D006571 5.1e-21 106.7 142 45.8
CBR_g30222 Chara braunii HOM05D005247 ORTHO05D006571 7.4e-20 102.8 305 23.3
CAN.G640.21 Capsicum annuum HOM05D005247 ORTHO05D006571 2.2e-16 91.3 86 52.3
FAN22G1325 Fragaria x ananassa HOM05D005247 ORTHO05D006571 9.4e-15 85.9 71 66.2
Pp3c14_7470 Physcomitrium patens HOM05D005247 ORTHO05D006571 1.1e-12 79.0 296 24.0
Hund28065 Selenicereus undatus HOM05D000003 ORTHO05D000006 6.5e-08 63.2 114 38.6
Hund28074 Selenicereus undatus HOM05D000003 ORTHO05D000006 6.5e-08 63.2 114 38.6
Eucgr.H03758 Eucalyptus grandis HOM05D005247 ORTHO05D006571 8.0e-06 56.2 40 57.5


User provided reference genes

Program Settings