Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim04G0216600 Rhododendron simsii HOM05D006883 ORTHO05D008624 1.1e-240 836.3 420 100.0
vmacro08200 Vaccinium macrocarpon HOM05D006883 ORTHO05D008624 1.2e-220 769.6 420 92.1
Actinidia40226 Actinidia chinensis HOM05D006883 ORTHO05D008624 9.1e-208 726.9 421 86.7
CSS0008645 Camellia sinensis var. sinensis HOM05D006883 ORTHO05D008624 7.5e-202 707.2 421 84.6
Lj6P670T41 Lonicera japonica HOM05D006883 ORTHO05D008624 5.2e-195 684.5 420 82.1
Dinv38322 Davidia involucrata HOM05D006883 ORTHO05D008624 9.8e-194 680.2 403 85.4
Actinidia23426 Actinidia chinensis HOM05D006883 ORTHO05D008624 2.2e-193 679.1 386 88.9
DCAR_030562 Daucus carota HOM05D006883 ORTHO05D008624 4.1e-192 674.9 420 81.4
Manes.15G016500 Manihot esculenta HOM05D006883 ORTHO05D008624 5.4e-192 674.5 420 81.2
QL06p007513 Quercus lobata HOM05D006883 ORTHO05D008624 3.5e-191 671.8 421 80.8
Cfa015347 Carpinus fangiana HOM05D006883 ORTHO05D008624 2.2e-190 669.1 423 81.6
CAN.G556.8 Capsicum annuum HOM05D006883 ORTHO05D008624 2.9e-190 668.7 421 80.0
Haze_01264 Corylus avellana HOM05D006883 ORTHO05D008624 8.5e-190 667.2 423 81.3
Prupe.1G141800 Prunus persica HOM05D006883 ORTHO05D008624 4.2e-189 664.8 421 80.5
Nitab4.5_0000829g0010 Nicotiana tabacum HOM05D006883 ORTHO05D008624 7.2e-189 664.1 420 79.5
FvH4_4g17240 Fragaria vesca HOM05D006883 ORTHO05D008624 4.7e-188 661.4 421 78.4
FAN12G3260 Fragaria x ananassa HOM05D006883 ORTHO05D008624 4.7e-188 661.4 421 78.4
Nitab4.5_0002986g0100 Nicotiana tabacum HOM05D006883 ORTHO05D008624 4.7e-188 661.4 420 79.3
Cc03_g02320 Coffea canephora HOM05D006883 ORTHO05D008624 6.1e-188 661.0 420 80.0
FAN12G0993 Fragaria x ananassa HOM05D006883 ORTHO05D008624 8.0e-188 660.6 421 78.1
FAN17G0491 Fragaria x ananassa HOM05D006883 ORTHO05D008624 1.0e-187 660.2 421 78.4
FAN22G2222 Fragaria x ananassa HOM05D006883 ORTHO05D008624 1.4e-187 659.8 421 77.9
RcHm_v2.0_Chr4g0421151 Rosa chinensis HOM05D006883 ORTHO05D008624 1.4e-187 659.8 420 79.5
Sopen01g029090 Solanum pennellii HOM05D006883 ORTHO05D008624 2.6e-186 655.6 422 78.9
CiPaw.02G086300 Carya illinoinensis HOM05D006883 ORTHO05D008624 1.7e-185 652.9 421 80.5
Aqoxy2G03105 Aquilegia oxysepala HOM05D006883 ORTHO05D008624 6.3e-185 651.0 422 78.9
PGSC0003DMG400022678 Solanum tuberosum HOM05D006883 ORTHO05D008624 8.3e-185 650.6 422 78.2
Ciclev10005043m.g Citrus clementina HOM05D006883 ORTHO05D008624 3.1e-184 648.7 423 79.0
CsaV3_3G014130 Cucumis sativus L. HOM05D006883 ORTHO05D008624 5.9e-183 644.4 421 76.7
Gorai.011G186200 Gossypium raimondii HOM05D006883 ORTHO05D008624 5.0e-182 641.3 421 77.2
Sabra08G0157100 Salix brachista HOM05D006883 ORTHO05D008624 1.5e-181 639.8 420 76.7
CANSAT78G0922 Cannabis sativa HOM05D006883 ORTHO05D008624 4.3e-181 638.3 410 78.3
Gohir.A10G101275 Gossypium hirsutum HOM05D006883 ORTHO05D008624 5.6e-181 637.9 421 76.7
TAR633G1607 Trochodendron aralioides HOM05D006883 ORTHO05D008624 9.5e-181 637.1 422 77.5
TWI53G1857 Tripterygium wilfordii HOM05D006883 ORTHO05D008624 1.6e-180 636.3 420 76.4
TWI53G0676 Tripterygium wilfordii HOM05D006883 ORTHO05D008624 6.1e-180 634.4 420 76.2
Potri.008G204900 Populus trichocarpa HOM05D006883 ORTHO05D008624 8.0e-180 634.0 420 76.4
Thecc.04G278100 Theobroma cacao HOM05D006883 ORTHO05D008624 8.0e-180 634.0 421 77.0
MD13G1173600 Malus domestica HOM05D006883 ORTHO05D008624 2.3e-179 632.5 422 77.5
MSTRG.10057 Avicennia marina HOM05D006883 ORTHO05D008624 5.2e-179 631.3 422 75.6
Lsat_1_v5_gn_3_24840 Lactuca sativa HOM05D006883 ORTHO05D008624 5.2e-179 631.3 421 77.7
Nn4g26002 Nelumbo nucifera HOM05D006883 ORTHO05D008624 1.2e-178 630.2 372 84.7
arahy.Tifrunner.gnm1.ann1.WI0ZBZ Arachis hypogaea HOM05D006883 ORTHO05D008624 7.5e-178 627.5 421 76.5
Sed0024317 Sechium edule HOM05D006883 ORTHO05D008624 1.3e-177 626.7 422 75.4
LjContig00389g0025618 Lotus japonicus HOM05D006883 ORTHO05D008624 1.7e-177 626.3 424 76.2
Duzib052G0675 Durio zibethinus HOM05D006883 ORTHO05D008624 2.2e-177 625.9 421 75.8
arahy.Tifrunner.gnm1.ann1.GN2N7N Arachis hypogaea HOM05D006883 ORTHO05D008624 6.4e-177 624.4 421 76.0
Oeu044787.1 Olea europaea HOM05D006883 ORTHO05D008624 1.1e-176 623.6 420 77.1
Peaxi162Scf00386g00096 Petunia axillaris HOM05D006883 ORTHO05D008624 3.2e-176 622.1 410 77.6
THA.LOC104802726 Tarenaya hassleriana HOM05D006883 ORTHO05D008624 3.2e-176 622.1 421 75.5
Glyma.13G215400 Glycine max HOM05D006883 ORTHO05D008624 9.2e-176 620.5 423 75.4
Eucgr.H03771 Eucalyptus grandis HOM05D006883 ORTHO05D008624 1.2e-175 620.2 422 74.9
SalBow2G1088 Salvia bowleyana HOM05D006883 ORTHO05D008624 4.6e-175 618.2 422 73.9
Lalb_Chr18g0055701 Lupinus albus HOM05D006883 ORTHO05D008624 5.9e-175 617.8 423 75.9
Psat1g187280 Pisum sativum HOM05D006883 ORTHO05D008624 7.8e-175 617.5 424 74.8
Glyma.15G097700 Glycine max HOM05D006883 ORTHO05D008624 1.0e-174 617.1 423 75.4
Lalb_Chr15g0087031 Lupinus albus HOM05D006883 ORTHO05D008624 5.0e-174 614.8 424 75.0
ECA246G3623 Erigeron canadensis HOM05D006883 ORTHO05D008624 1.1e-173 613.6 421 75.3
Migut.G00206 Erythranthe guttata HOM05D006883 ORTHO05D008624 1.5e-173 613.2 422 73.7
COL.COLO4_13924 Corchorus olitorius HOM05D006883 ORTHO05D008624 3.3e-173 612.1 424 75.9
AL6G29930 Arabidopsis lyrata HOM05D006883 ORTHO05D008624 3.6e-172 608.6 418 74.4
Ca_00572_v3 Cicer arietinum L. HOM05D006883 ORTHO05D008624 3.6e-172 608.6 424 73.8
HanXRQChr08g0208101 Helianthus annuus HOM05D006883 ORTHO05D008624 1.0e-171 607.1 385 79.2
AT5G18660 Arabidopsis thaliana HOM05D006883 ORTHO05D008624 6.8e-171 604.4 418 73.7
PGR004G1631 Punica granatum HOM05D006883 ORTHO05D008624 6.8e-171 604.4 403 76.9
Sp6g25680 Schrenkiella parvula HOM05D006883 ORTHO05D008624 6.8e-171 604.4 418 73.7
Thhalv10013668m.g Eutrema salsugineum HOM05D006883 ORTHO05D008624 8.9e-171 604.0 418 73.7
PSO210G3900 Papaver somniferum HOM05D006883 ORTHO05D008624 8.9e-171 604.0 423 73.5
Carub.0006s1695 Capsella rubella HOM05D006883 ORTHO05D008624 2.0e-170 602.8 419 73.5
Aa31LG11G10960 Aethionema arabicum HOM05D006883 ORTHO05D008624 4.4e-170 601.7 419 74.0
Medtr2g020160 Medicago truncatula HOM05D006883 ORTHO05D008624 5.8e-170 601.3 426 72.8
Phvul.006G161600 Phaseolus vulgaris HOM05D006883 ORTHO05D008624 5.8e-170 601.3 422 73.7
Ah.06g192160 Amaranthus hybridus HOM05D006883 ORTHO05D008624 1.3e-169 600.1 392 77.8
AUR62041764 Chenopodium quinoa HOM05D006883 ORTHO05D008624 4.9e-169 598.2 428 73.4
PSO170G0113 Papaver somniferum HOM05D006883 ORTHO05D008624 6.4e-169 597.8 422 72.5
CARHR194360 Cardamine hirsuta HOM05D006883 ORTHO05D008624 1.9e-168 596.3 418 73.2
Atru.BG.87.p Acer truncatum HOM05D006883 ORTHO05D008624 3.5e-167 592.0 349 85.1
BcaC04g18657 Brassica carinata HOM05D006883 ORTHO05D008624 3.0e-166 589.0 421 70.1
BolC9t58650H Brassica oleracea HOM05D006883 ORTHO05D008624 3.0e-166 589.0 421 70.1
CDE11G0693 Ceratophyllum demersum HOM05D006883 ORTHO05D008624 1.1e-165 587.0 384 76.3
AUR62041032 Chenopodium quinoa HOM05D006883 ORTHO05D008624 1.1e-165 587.0 428 72.2
Sc25g0004770 Simmondsia chinensis HOM05D006883 ORTHO05D008624 3.3e-165 585.5 376 77.7
BcaB08g36654 Brassica carinata HOM05D006883 ORTHO05D008624 3.6e-164 582.0 420 70.7
C09p57810 Brassica napus HOM05D006883 ORTHO05D008624 8.1e-164 580.9 420 69.3
EL10Ac4g09099 Beta vulgaris HOM05D006883 ORTHO05D008624 2.3e-163 579.3 414 72.7
CSS0011936 Camellia sinensis var. sinensis HOM05D006883 ORTHO05D008624 5.2e-163 578.2 350 80.6
CSS0009780 Camellia sinensis var. sinensis HOM05D006883 ORTHO05D008624 1.5e-162 576.6 350 80.3
TPR.G1530 Trifolium pratense HOM05D006883 ORTHO05D008624 5.8e-162 574.7 432 69.2
A10p20920 Brassica napus HOM05D006883 ORTHO05D008624 1.3e-161 573.5 419 70.2
BraA10t44156Z Brassica rapa HOM05D006883 ORTHO05D008624 4.9e-161 571.6 419 69.9
unitig_748.g8372 Utricularia gibba HOM05D006883 ORTHO05D008624 1.9e-160 569.7 420 70.0
MBI19_g30852_MAGBIO Magnolia biondii HOM05D006883 ORTHO05D008624 5.4e-160 568.2 363 78.8
SGA_v2.0_scaffold973G53763 Striga asiatica HOM05D006883 ORTHO05D008624 5.6e-157 558.1 407 70.3
ATR0706G234 Amborella trichopoda HOM05D006883 ORTHO05D008624 2.2e-153 546.2 351 76.6
CDE02G1591 Ceratophyllum demersum HOM05D006883 ORTHO05D008624 7.1e-152 541.2 421 67.9
SEGI_20295 Sequoiadendron giganteum HOM05D006883 ORTHO05D008624 2.8e-148 529.3 412 65.5
Mapoly0058s0049 Marchantia polymorpha HOM05D006883 ORTHO05D008624 2.0e-146 523.1 421 64.1
VMungo0540G0878 Vigna mungo HOM05D006883 ORTHO05D008624 4.9e-145 518.5 422 66.4
HPP92_006930 Vanilla planifolia HOM05D006883 ORTHO05D008624 1.3e-142 510.4 345 71.3
AagrBONN_evm.TU.Sc2ySwM_369.460 Anthoceros agrestis HOM05D006883 ORTHO05D008624 4.3e-141 505.4 357 69.5
Pp3c7_3620 Physcomitrium patens HOM05D006883 ORTHO05D008624 4.9e-137 491.9 387 64.9
Os03g0351200 Oryza sativa ssp. japonica HOM05D006883 ORTHO05D008624 9.6e-133 477.6 382 63.6
Zm00001eb016830 Zea mays HOM05D006883 ORTHO05D008624 9.6e-133 477.6 357 66.7
CBR_g77624 Chara braunii HOM05D006883 ORTHO05D008624 1.2e-130 470.7 439 56.9
Gohir.D10G166900 Gossypium hirsutum HOM05D006883 ORTHO05D008624 3.5e-127 459.1 254 87.8
Cpa.g.sc1008.1 Carica papaya HOM05D006883 ORTHO05D008624 3.3e-125 452.6 320 74.1
Cre01.g042800 Chlamydomonas reinhardtii HOM05D006883 ORTHO05D008624 5.9e-114 415.2 407 53.8
SMO174G0102 Selaginella moellendorffii HOM05D006883 ORTHO05D008624 2.9e-113 412.9 344 61.9
MCO03G528 Micromonas commoda HOM05D006883 ORTHO05D008624 5.7e-109 398.7 339 60.2
DCAR_030560 Daucus carota HOM05D006883 ORTHO05D008624 7.4e-109 398.3 233 85.0
MELO3C006606.2 Cucumis melo HOM05D006883 ORTHO05D008624 3.4e-106 389.4 222 85.6
DCAR_030558 Daucus carota HOM05D006883 ORTHO05D008624 2.6e-98 363.2 192 90.6
Solyc01g067290.3 Solanum lycopersicum HOM05D006883 ORTHO05D008624 6.7e-94 348.6 192 86.5
PRCOL_00006445 Prasinoderma coloniale HOM05D006883 ORTHO05D008624 1.2e-69 268.1 335 43.0
Oeu061954.1 Olea europaea HOM05D006883 ORTHO05D008624 5.1e-33 146.4 121 62.8
Migut.M00184 Erythranthe guttata HOM05D006883 ORTHO05D008624 2.3e-25 120.9 127 55.1
GSVIVG01017797001 Vitis vinifera HOM05D006883 ORTHO05D008624 1.8e-22 111.3 135 51.9
Glyma.01G172900 Glycine max HOM05D000342 ORTHO05D000217 3.0e-09 67.4 241 26.1
Peaxi162Scf00003g01433 Petunia axillaris HOM05D005785 ORTHO05D007962 3.9e-09 67.0 380 25.8
Aqoxy6G00992 Aquilegia oxysepala HOM05D005785 ORTHO05D007962 8.7e-09 65.9 246 30.9
Glyma.11G070200 Glycine max HOM05D000342 ORTHO05D000217 8.7e-09 65.9 248 26.2
CBR_g37527 Chara braunii HOM05D006026 ORTHO05D007502 7.4e-08 62.8 300 22.3
Pp3c15_7750 Physcomitrium patens HOM05D005785 ORTHO05D007017 7.4e-08 62.8 239 26.8
SMO146G0207 Selaginella moellendorffii HOM05D005785 ORTHO05D007962 7.4e-08 62.8 177 29.4
Gohir.A09G077900 Gossypium hirsutum HOM05D005455 ORTHO05D007017 1.3e-07 62.0 228 29.8
MBI08_g19978_MAGBIO Magnolia biondii HOM05D006026 ORTHO05D007502 2.1e-07 61.2 316 25.9
Nn6g31746 Nelumbo nucifera HOM05D006026 ORTHO05D007502 2.1e-07 61.2 282 26.2
Aa31LG10G6920 Aethionema arabicum HOM05D005455 ORTHO05D007017 2.8e-07 60.8 187 31.0
AagrBONN_evm.TU.Sc2ySwM_228.3661 Anthoceros agrestis HOM05D006026 ORTHO05D007502 2.8e-07 60.8 333 22.2
TAR628G1306 Trochodendron aralioides HOM05D005785 ORTHO05D007962 2.8e-07 60.8 197 31.5
Lj5A173T64 Lonicera japonica HOM05D006026 ORTHO05D007502 3.7e-07 60.5 317 22.7
Carub.0004s1613 Capsella rubella HOM05D005455 ORTHO05D007017 4.8e-07 60.1 183 30.6
CDE05G3682 Ceratophyllum demersum HOM05D006026 ORTHO05D007502 4.8e-07 60.1 360 23.1
Migut.B00273 Erythranthe guttata HOM05D005785 ORTHO05D007962 4.8e-07 60.1 193 31.1
Gorai.006G093300 Gossypium raimondii HOM05D005455 ORTHO05D007017 4.8e-07 60.1 223 29.1
Gohir.D09G078100 Gossypium hirsutum HOM05D005455 ORTHO05D007017 6.2e-07 59.7 228 29.4
Lsat_1_v5_gn_0_45440 Lactuca sativa HOM05D005455 ORTHO05D007017 6.2e-07 59.7 235 28.5
Lsat_1_v5_gn_1_96821 Lactuca sativa HOM05D005455 ORTHO05D007017 6.2e-07 59.7 235 28.5
MCO02G084 Micromonas commoda HOM05D006655 ORTHO05D007986 6.2e-07 59.7 174 31.6
AT2G34460 Arabidopsis thaliana HOM05D005455 ORTHO05D007017 8.2e-07 59.3 217 29.5
PSO675G4706 Papaver somniferum HOM05D006026 ORTHO05D007502 8.2e-07 59.3 303 25.1
Thecc.01G032500 Theobroma cacao HOM05D000342 ORTHO05D000217 8.2e-07 59.3 311 23.2
MSTRG.19950 Avicennia marina HOM05D006026 ORTHO05D007502 1.1e-06 58.9 332 24.4
CAN.G1.48 Capsicum annuum HOM05D005785 ORTHO05D007962 1.1e-06 58.9 198 30.8
Cre02.g142146 Chlamydomonas reinhardtii HOM05D006026 ORTHO05D007502 1.4e-06 58.5 336 22.3
Os08g0553800 Oryza sativa ssp. japonica HOM05D006026 ORTHO05D007502 1.4e-06 58.5 291 25.1
PSO541G6277 Papaver somniferum HOM05D006026 ORTHO05D007502 1.4e-06 58.5 303 24.8
Rhsim11G0172800 Rhododendron simsii HOM05D005785 ORTHO05D007962 1.4e-06 58.5 209 32.1
CDE05G1234 Ceratophyllum demersum HOM05D006026 ORTHO05D007502 1.8e-06 58.2 306 23.2
COL.COLO4_38289 Corchorus olitorius HOM05D005455 ORTHO05D007017 1.8e-06 58.2 261 27.2
PGR042G2452 Punica granatum HOM05D005455 ORTHO05D007017 1.8e-06 58.2 244 27.0
SMO011G0028 Selaginella moellendorffii HOM05D006026 ORTHO05D007502 1.8e-06 58.2 280 23.9
HPP92_023862 Vanilla planifolia HOM05D005455 ORTHO05D007017 1.8e-06 58.2 192 29.2
CARHR128560 Cardamine hirsuta HOM05D005455 ORTHO05D007017 2.4e-06 57.8 219 29.2
CsaV3_6G051640 Cucumis sativus L. HOM05D005455 ORTHO05D007017 2.4e-06 57.8 199 30.2
Dinv41889 Davidia involucrata HOM05D006026 ORTHO05D007502 2.4e-06 57.8 320 23.1
Sp4g16730 Schrenkiella parvula HOM05D005455 ORTHO05D007017 2.4e-06 57.8 185 31.4
SMO134G0234 Selaginella moellendorffii HOM05D000342 ORTHO05D000217 2.4e-06 57.8 237 24.1
TWI79G0480 Tripterygium wilfordii HOM05D005785 ORTHO05D007962 2.4e-06 57.8 252 27.8
Cpa.g.sc20.183 Carica papaya HOM05D006026 ORTHO05D007502 3.1e-06 57.4 262 26.3
Dinv23561 Davidia involucrata HOM05D005785 ORTHO05D007962 3.1e-06 57.4 203 30.5
Sc14g0002380 Simmondsia chinensis HOM05D006026 ORTHO05D007502 3.1e-06 57.4 293 22.9
TAR376G0854 Trochodendron aralioides HOM05D006026 ORTHO05D007502 3.1e-06 57.4 284 23.9
BcaB08g34904 Brassica carinata HOM05D000834 ORTHO05D006956 4.0e-06 57.0 275 22.5
Manes.04G065300 Manihot esculenta HOM05D006026 ORTHO05D007502 4.0e-06 57.0 279 24.0
Peaxi162Scf00362g00257 Petunia axillaris HOM05D006026 ORTHO05D007502 4.0e-06 57.0 259 23.6
SEGI_40956 Sequoiadendron giganteum HOM05D005785 ORTHO05D007962 4.0e-06 57.0 269 28.6
Zm00001eb038110 Zea mays HOM05D005455 ORTHO05D007017 4.0e-06 57.0 184 29.3
Zm00001eb039850 Zea mays HOM05D006026 ORTHO05D007502 4.0e-06 57.0 282 24.1
Sed0018198 Sechium edule HOM05D006026 ORTHO05D007502 5.3e-06 56.6 329 24.3
THA.LOC104814289 Tarenaya hassleriana HOM05D005455 ORTHO05D007017 5.3e-06 56.6 225 28.0
CSS0009314 Camellia sinensis var. sinensis HOM05D006026 ORTHO05D007502 6.9e-06 56.2 324 25.9
CSS0017921 Camellia sinensis var. sinensis HOM05D006026 ORTHO05D007502 6.9e-06 56.2 324 25.9
ECA233G5240 Erigeron canadensis HOM05D006026 ORTHO05D007502 6.9e-06 56.2 287 22.0
Glyma.11G070300 Glycine max HOM05D000342 ORTHO05D000217 6.9e-06 56.2 234 25.2
arahy.Tifrunner.gnm1.ann1.A1R83D Arachis hypogaea HOM05D000342 ORTHO05D000217 9.0e-06 55.8 246 25.2
ClCG00G000750 Citrullus lanatus HOM05D006026 ORTHO05D007502 9.0e-06 55.8 323 23.5
ClCG00G001730 Citrullus lanatus HOM05D006026 ORTHO05D007502 9.0e-06 55.8 323 23.5
Lj1g0012573 Lotus japonicus HOM05D006026 ORTHO05D007502 9.0e-06 55.8 282 24.8
Pp3c6_24470 Physcomitrium patens HOM05D005455 ORTHO05D007017 9.0e-06 55.8 193 28.0
Thecc.02G047100 Theobroma cacao HOM05D006026 ORTHO05D007502 9.0e-06 55.8 279 24.0


User provided reference genes

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