Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim04G0216500 Rhododendron simsii HOM05D006775 ORTHO05D008344 0.0e+00 1419.1 684 100.0
vmacro08201 Vaccinium macrocarpon HOM05D006775 ORTHO05D008344 2.0e-79 301.2 237 65.4
Actinidia40225 Actinidia chinensis HOM05D006775 ORTHO05D008344 2.7e-68 264.2 256 55.5
Hma1.2p1_0823F.1_g224630 Hydrangea macrophylla HOM05D006775 ORTHO05D008344 2.6e-63 247.7 250 52.8
QL06p007489 Quercus lobata HOM05D006775 ORTHO05D008344 5.3e-56 223.4 295 44.4
Cfa015346 Carpinus fangiana HOM05D006775 ORTHO05D008344 3.8e-54 217.2 249 47.8
ECA240G4404 Erigeron canadensis HOM05D006775 ORTHO05D008344 1.9e-53 214.9 234 49.6
Lj3A812T71 Lonicera japonica HOM05D006775 ORTHO05D008344 3.2e-53 214.2 234 47.9
MSTRG.10056 Avicennia marina HOM05D006775 ORTHO05D008344 1.6e-52 211.8 233 51.1
Nitab4.5_0005595g0020 Nicotiana tabacum HOM05D006775 ORTHO05D008344 2.1e-52 211.5 239 48.5
GSVIVG01017799001 Vitis vinifera HOM05D000611 ORTHO05D000809 2.1e-52 211.5 258 46.9
SalBow2G3406 Salvia bowleyana HOM05D006775 ORTHO05D008344 4.7e-52 210.3 233 48.9
TAR633G2345 Trochodendron aralioides HOM05D001386 ORTHO05D003791 6.1e-52 209.9 238 48.3
Atru.chr4.2756 Acer truncatum HOM05D006775 ORTHO05D008344 7.9e-52 209.5 274 43.8
HanXRQChr03g0079491 Helianthus annuus HOM05D006775 ORTHO05D008344 1.4e-51 208.8 234 48.3
Sc25g0004760 Simmondsia chinensis HOM05D006775 ORTHO05D008344 1.8e-51 208.4 234 47.4
Peaxi162Scf00386g00010 Petunia axillaris HOM05D006775 ORTHO05D008344 3.0e-51 207.6 239 47.3
Manes.15G016600 Manihot esculenta HOM05D006775 ORTHO05D008344 3.9e-51 207.2 240 47.1
Lsat_1_v5_gn_5_50761 Lactuca sativa HOM05D006775 ORTHO05D008344 6.7e-51 206.5 234 46.6
SGA_v2.0_scaffold57G20240 Striga asiatica HOM05D006775 ORTHO05D008344 8.8e-51 206.1 233 48.9
Prupe.1G365500 Prunus persica HOM05D006775 ORTHO05D008344 2.0e-50 204.9 259 42.9
COL.COLO4_13925 Corchorus olitorius HOM05D006775 ORTHO05D008344 3.3e-50 204.1 242 46.7
PGR004G1240 Punica granatum HOM05D006775 ORTHO05D008344 3.7e-49 200.7 236 45.8
Ciclev10006777m.g Citrus clementina HOM05D000611 ORTHO05D000809 6.3e-49 199.9 230 46.1
DCAR_002444 Daucus carota HOM05D006775 ORTHO05D008344 6.3e-49 199.9 241 45.2
TWI09G0159 Tripterygium wilfordii HOM05D006775 ORTHO05D008344 6.3e-49 199.9 237 46.4
TWI09G0165 Tripterygium wilfordii HOM05D006775 ORTHO05D008344 6.3e-49 199.9 237 46.4
TWI09G0706 Tripterygium wilfordii HOM05D006775 ORTHO05D008344 6.3e-49 199.9 237 46.4
Cc03_g02340 Coffea canephora HOM05D006775 ORTHO05D008344 2.4e-48 198.0 230 45.2
MD00G1092600 Malus domestica HOM05D006775 ORTHO05D008344 2.4e-48 198.0 233 43.8
Nn4g25991 Nelumbo nucifera HOM05D006775 ORTHO05D008344 4.1e-48 197.2 319 39.2
Thecc.04G277900 Theobroma cacao HOM05D006775 ORTHO05D008344 4.1e-48 197.2 266 44.0
Migut.G00207 Erythranthe guttata HOM05D006775 ORTHO05D008344 5.3e-48 196.8 233 45.5
PGSC0003DMG400022660 Solanum tuberosum HOM05D006775 ORTHO05D008344 7.0e-48 196.4 239 46.0
Sopen01g029070 Solanum pennellii HOM05D006775 ORTHO05D008344 1.2e-47 195.7 239 46.4
Nn3g21322 Nelumbo nucifera HOM05D006775 ORTHO05D008344 1.6e-47 195.3 270 43.0
Solyc01g067280.3 Solanum lycopersicum HOM05D006775 ORTHO05D008344 2.0e-47 194.9 239 46.0
Oeu062887.1 Olea europaea HOM05D006775 ORTHO05D008344 5.9e-47 193.4 218 49.1
Glyma.07G251400 Glycine max HOM05D006775 ORTHO05D008344 7.7e-47 193.0 264 39.0
Cpa.g.sc1008.3 Carica papaya HOM05D006775 ORTHO05D008344 1.0e-46 192.6 283 41.7
Eucgr.H03770 Eucalyptus grandis HOM05D006775 ORTHO05D008344 2.9e-46 191.0 228 45.2
Nitab4.5_0003256g0010 Nicotiana tabacum HOM05D006775 ORTHO05D008344 2.9e-46 191.0 232 46.1
Phvul.003G101000 Phaseolus vulgaris HOM05D006775 ORTHO05D008344 1.9e-45 188.3 262 39.3
Glyma.17G022900 Glycine max HOM05D006775 ORTHO05D008344 4.2e-45 187.2 233 40.8
Potri.008G204800 Populus trichocarpa HOM05D006775 ORTHO05D008344 1.2e-44 185.7 239 43.9
MBI18_g12413_MAGBIO Magnolia biondii HOM05D006775 ORTHO05D008344 1.6e-44 185.3 234 44.4
Aqoxy5G01958 Aquilegia oxysepala HOM05D006775 ORTHO05D008344 2.7e-44 184.5 265 37.4
VMungo1215G1959 Vigna mungo HOM05D006775 ORTHO05D008344 4.7e-44 183.7 262 38.9
Duzib151G0911 Durio zibethinus HOM05D006775 ORTHO05D008344 8.0e-44 183.0 220 45.0
Gohir.D10G166800 Gossypium hirsutum HOM05D006775 ORTHO05D008344 1.0e-43 182.6 232 42.7
Lalb_Chr13g0303871 Lupinus albus HOM05D006775 ORTHO05D008344 1.8e-43 181.8 292 36.6
unitig_32.g10786 Utricularia gibba HOM05D006775 ORTHO05D008344 1.8e-43 181.8 232 43.5
Gohir.A10G101330 Gossypium hirsutum HOM05D006775 ORTHO05D008344 6.7e-43 179.9 232 41.8
Haze_01265 Corylus avellana HOM05D006775 ORTHO05D008344 1.2e-42 179.1 240 43.8
CiPaw.02G086400 Carya illinoinensis HOM05D006775 ORTHO05D008344 1.5e-42 178.7 238 41.2
Gorai.011G186100 Gossypium raimondii HOM05D006775 ORTHO05D008344 2.6e-42 177.9 232 42.2
arahy.Tifrunner.gnm1.ann1.HV9WHL Arachis hypogaea HOM05D006775 ORTHO05D008344 3.3e-42 177.6 240 40.4
arahy.Tifrunner.gnm1.ann1.UNR197 Arachis hypogaea HOM05D006775 ORTHO05D008344 3.3e-42 177.6 240 40.4
ClCG05G005800 Citrullus lanatus HOM05D006775 ORTHO05D008344 3.3e-42 177.6 234 40.2
EL10Ac3g06567 Beta vulgaris HOM05D006775 ORTHO05D008344 4.4e-42 177.2 245 42.4
Ah.13g074540 Amaranthus hybridus HOM05D006196 ORTHO05D007758 6.3e-41 173.3 264 39.0
Sed0012602 Sechium edule HOM05D006775 ORTHO05D008344 6.3e-41 173.3 233 40.3
CsaV3_3G014150 Cucumis sativus L. HOM05D006775 ORTHO05D008344 1.1e-40 172.6 234 39.7
MELO3C006607.2 Cucumis melo HOM05D006775 ORTHO05D008344 5.3e-40 170.2 234 39.7
AUR62042989 Chenopodium quinoa HOM05D006775 ORTHO05D008344 7.0e-40 169.9 244 38.9
Sabra08G0157200 Salix brachista HOM05D006775 ORTHO05D008344 7.0e-40 169.9 230 41.3
Lj4g0016853 Lotus japonicus HOM05D006775 ORTHO05D008344 1.2e-39 169.1 235 38.3
Medtr4g118790 Medicago truncatula HOM05D006775 ORTHO05D008344 1.3e-38 165.6 232 38.8
Psat4g030400 Pisum sativum HOM05D006775 ORTHO05D008344 8.5e-38 162.9 264 36.0
PSO832G0266 Papaver somniferum HOM05D006775 ORTHO05D008344 4.2e-37 160.6 226 40.7
TPR.G14956 Trifolium pratense HOM05D006775 ORTHO05D008344 7.2e-37 159.8 232 39.2
RcHm_v2.0_Chr6g0302841 Rosa chinensis HOM05D006775 ORTHO05D008344 2.1e-36 158.3 233 37.8
HPP92_025211 Vanilla planifolia HOM05D006775 ORTHO05D008344 1.4e-35 155.6 221 38.0
FvH4_2g38460 Fragaria vesca HOM05D006775 ORTHO05D008344 3.0e-35 154.5 226 38.9
Psat4g030480 Pisum sativum HOM05D006775 ORTHO05D008344 4.0e-35 154.1 242 36.0
HPP92_025229 Vanilla planifolia HOM05D006775 ORTHO05D008344 4.0e-35 154.1 221 37.6
CSS0032456 Camellia sinensis var. sinensis HOM05D006775 ORTHO05D008344 1.2e-34 152.5 93 79.6
FAN20G0357 Fragaria x ananassa HOM05D006775 ORTHO05D008344 5.7e-34 150.2 226 38.9
HPP92_025275 Vanilla planifolia HOM05D006775 ORTHO05D008344 6.3e-33 146.7 216 37.5
THA.LOC104820238 Tarenaya hassleriana HOM05D006775 ORTHO05D008344 4.5e-31 140.6 262 34.7
ATR0706G197 Amborella trichopoda HOM05D006775 ORTHO05D008344 1.0e-30 139.4 220 35.9
Gohir.A09G233400 Gossypium hirsutum HOM05D006775 ORTHO05D008344 2.3e-30 138.3 230 37.4
CARHR289990 Cardamine hirsuta HOM05D006775 ORTHO05D008344 6.5e-30 136.7 262 34.4
Ca_21549_v3 Cicer arietinum L. HOM05D006775 ORTHO05D008344 6.5e-30 136.7 225 35.1
CANSAT78G0382 Cannabis sativa HOM05D006775 ORTHO05D008344 8.6e-30 136.3 274 34.7
A01p21970 Brassica napus HOM05D006775 ORTHO05D008344 1.5e-29 135.6 228 36.4
BraA01t02103Z Brassica rapa HOM05D006775 ORTHO05D008344 1.5e-29 135.6 228 36.4
Gorai.006G257400 Gossypium raimondii HOM05D006775 ORTHO05D008344 1.9e-29 135.2 222 38.3
Gohir.D09G234500 Gossypium hirsutum HOM05D006775 ORTHO05D008344 2.5e-29 134.8 222 37.8
BcaC09g50254 Brassica carinata HOM05D001154 ORTHO05D001175 3.2e-29 134.4 228 36.0
C01p27330 Brassica napus HOM05D006775 ORTHO05D008344 3.2e-29 134.4 228 36.0
BolC1t02676H Brassica oleracea HOM05D006775 ORTHO05D008344 3.2e-29 134.4 228 36.0
Dinv38323 Davidia involucrata HOM05D006775 ORTHO05D008344 5.5e-29 133.7 93 67.7
Carub.0007s2625 Capsella rubella HOM05D006775 ORTHO05D008344 7.2e-29 133.3 228 37.7
Rhsim12G0090200 Rhododendron simsii HOM05D006775 ORTHO05D008344 9.5e-29 132.9 67 92.5
BcaNung00261 Brassica carinata HOM05D006775 ORTHO05D008344 1.6e-28 132.1 240 34.6
Aa31LG9G1860 Aethionema arabicum HOM05D006775 ORTHO05D008344 6.1e-28 130.2 262 32.8
Sp7g13860 Schrenkiella parvula HOM05D006775 ORTHO05D008344 8.0e-28 129.8 233 36.1
AL7G39920 Arabidopsis lyrata HOM05D006775 ORTHO05D008344 8.8e-27 126.3 223 37.7
CSS0028683 Camellia sinensis var. sinensis HOM05D006775 ORTHO05D008344 8.8e-27 126.3 86 66.3
Duzib052G0853 Durio zibethinus HOM05D006775 ORTHO05D008344 6.3e-25 120.2 222 35.6
Os05g0372800 Oryza sativa ssp. japonica HOM05D006775 ORTHO05D008344 1.8e-24 118.6 223 32.3
AT4G15563 Arabidopsis thaliana HOM05D006775 ORTHO05D008344 5.4e-24 117.1 223 34.5
Thhalv10026419m.g Eutrema salsugineum HOM05D006775 ORTHO05D008344 1.2e-23 115.9 221 34.8
Zm00001eb285420 Zea mays HOM05D006775 ORTHO05D008344 2.0e-23 115.2 243 31.7
Gohir.D10G153500 Gossypium hirsutum HOM05D006775 ORTHO05D008344 4.3e-21 107.5 221 35.7
SMO340G0127 Selaginella moellendorffii HOM05D006775 ORTHO05D008344 2.8e-20 104.8 205 31.7
Eucgr.A01819 Eucalyptus grandis HOM05D006775 ORTHO05D008344 3.6e-20 104.4 152 38.2
Pp3c2_550 Physcomitrium patens HOM05D006775 ORTHO05D008344 1.4e-19 102.4 221 29.0
MD09G1114900 Malus domestica HOM05D006775 ORTHO05D008344 1.8e-19 102.1 99 48.5
Aqoxy5G00644 Aquilegia oxysepala HOM05D006775 ORTHO05D008344 2.0e-18 98.6 106 43.4
Oeu052260.1 Olea europaea HOM05D006775 ORTHO05D008344 7.5e-18 96.7 224 33.5
CDE08G1672 Ceratophyllum demersum HOM05D006775 ORTHO05D008344 4.9e-17 94.0 73 60.3
AagrBONN_evm.TU.Sc2ySwM_362.2565 Anthoceros agrestis HOM05D006775 ORTHO05D008344 7.8e-15 86.7 211 26.5
Gorai.011G171400 Gossypium raimondii HOM05D006775 ORTHO05D008344 1.2e-12 79.3 175 35.4
CBR_g21749 Chara braunii HOM05D006775 ORTHO05D008344 3.1e-11 74.7 220 26.4
Zm00001eb351020 Zea mays HOM05D006775 ORTHO05D008344 3.1e-11 74.7 204 29.4
Actinidia23427 Actinidia chinensis HOM05D006775 ORTHO05D008344 1.2e-10 72.8 127 37.8


User provided reference genes

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