Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim04G0213100 Rhododendron simsii HOM05D003956 ORTHO05D004850 0.0e+00 1930.6 976 100.0
Actinidia23451 Actinidia chinensis HOM05D003956 ORTHO05D004850 0.0e+00 1727.6 976 90.2
Actinidia40209 Actinidia chinensis HOM05D003956 ORTHO05D004850 0.0e+00 1723.4 976 89.9
vmacro08238 Vaccinium macrocarpon HOM05D003956 ORTHO05D004850 0.0e+00 1676.8 1090 81.7
Dinv44455 Davidia involucrata HOM05D003956 ORTHO05D004850 0.0e+00 1669.4 978 87.2
TAR365G1004 Trochodendron aralioides HOM05D003956 ORTHO05D004850 0.0e+00 1666.7 983 86.3
GSVIVG01017850001 Vitis vinifera HOM05D003956 ORTHO05D004850 0.0e+00 1642.9 976 85.3
Prupe.1G146600 Prunus persica HOM05D003956 ORTHO05D004850 0.0e+00 1634.4 977 86.1
CiPaw.01G156600 Carya illinoinensis HOM05D003956 ORTHO05D004850 0.0e+00 1632.8 976 85.1
Atru.chr4.2704 Acer truncatum HOM05D003956 ORTHO05D004850 0.0e+00 1632.5 979 85.8
QL06p006231 Quercus lobata HOM05D003956 ORTHO05D004850 0.0e+00 1627.5 987 84.5
PGR004G0287 Punica granatum HOM05D003956 ORTHO05D004850 0.0e+00 1627.1 947 86.9
Peaxi162Scf00095g00414 Petunia axillaris HOM05D003956 ORTHO05D004850 0.0e+00 1622.4 977 84.2
Gorai.011G181800 Gossypium raimondii HOM05D003956 ORTHO05D004850 0.0e+00 1620.5 981 84.3
Nitab4.5_0000059g0230 Nicotiana tabacum HOM05D003956 ORTHO05D004850 0.0e+00 1617.4 990 83.5
CSS0033563 Camellia sinensis var. sinensis HOM05D003956 ORTHO05D004850 0.0e+00 1615.9 875 92.6
Duzib212G0153 Durio zibethinus HOM05D003956 ORTHO05D004850 0.0e+00 1615.1 983 84.4
Gohir.D10G162900 Gossypium hirsutum HOM05D003956 ORTHO05D004850 0.0e+00 1615.1 981 84.2
MD13G1177500 Malus domestica HOM05D003956 ORTHO05D004850 0.0e+00 1612.4 1000 83.5
Nitab4.5_0010477g0010 Nicotiana tabacum HOM05D003956 ORTHO05D004850 0.0e+00 1610.9 1003 82.5
Cfa015539 Carpinus fangiana HOM05D003956 ORTHO05D004850 0.0e+00 1609.3 974 85.0
Haze_01011 Corylus avellana HOM05D003956 ORTHO05D004850 0.0e+00 1608.6 974 85.0
MD16G1179500 Malus domestica HOM05D003956 ORTHO05D004850 0.0e+00 1608.2 971 85.2
CANSAT78G1736 Cannabis sativa HOM05D003956 ORTHO05D004850 0.0e+00 1607.4 982 83.4
TWI09G0935 Tripterygium wilfordii HOM05D003956 ORTHO05D004850 0.0e+00 1607.0 976 84.0
Eucgr.H03642 Eucalyptus grandis HOM05D003956 ORTHO05D004850 0.0e+00 1604.3 968 83.9
Manes.03G188300 Manihot esculenta HOM05D003956 ORTHO05D004850 0.0e+00 1604.0 900 89.7
CAN.G889.10 Capsicum annuum HOM05D003956 ORTHO05D004850 0.0e+00 1602.0 979 83.9
Cc03_g02730 Coffea canephora HOM05D003956 ORTHO05D004850 0.0e+00 1599.7 980 83.4
Nn3g21184 Nelumbo nucifera HOM05D003956 ORTHO05D004850 0.0e+00 1597.8 982 82.4
Sopen01g032260 Solanum pennellii HOM05D003956 ORTHO05D004850 0.0e+00 1597.0 981 83.0
Potri.010G027800 Populus trichocarpa HOM05D003956 ORTHO05D004850 0.0e+00 1595.9 983 83.3
Ciclev10006837m.g Citrus clementina HOM05D003956 ORTHO05D004850 0.0e+00 1594.7 1005 82.1
Solyc01g080460.3 Solanum lycopersicum HOM05D003956 ORTHO05D004850 0.0e+00 1589.7 978 82.5
Lj3C806G12 Lonicera japonica HOM05D003956 ORTHO05D004850 0.0e+00 1585.5 978 83.3
RcHm_v2.0_Chr4g0420131 Rosa chinensis HOM05D003956 ORTHO05D004850 0.0e+00 1584.7 979 82.4
Glyma.07G253700 Glycine max HOM05D003956 ORTHO05D004850 0.0e+00 1584.3 977 82.9
Sed0002405 Sechium edule HOM05D003956 ORTHO05D004850 0.0e+00 1582.8 979 82.8
CsaV3_3G013930 Cucumis sativus L. HOM05D003956 ORTHO05D004850 0.0e+00 1579.3 976 83.0
Aqoxy2G03183 Aquilegia oxysepala HOM05D003956 ORTHO05D004850 0.0e+00 1578.9 984 82.6
Glyma.17G020600 Glycine max HOM05D003956 ORTHO05D004850 0.0e+00 1574.3 980 82.7
FvH4_4g16670 Fragaria vesca HOM05D003956 ORTHO05D004850 0.0e+00 1572.4 977 81.7
ECA240G3955 Erigeron canadensis HOM05D003956 ORTHO05D004850 0.0e+00 1571.6 904 86.5
Migut.G00282 Erythranthe guttata HOM05D003956 ORTHO05D004850 0.0e+00 1570.8 875 88.5
VMungo1215G0684 Vigna mungo HOM05D003956 ORTHO05D004850 0.0e+00 1570.1 977 82.1
Hund20662 Selenicereus undatus HOM05D003956 ORTHO05D004850 0.0e+00 1568.1 977 81.7
Sabra10G0012900 Salix brachista HOM05D003956 ORTHO05D004850 0.0e+00 1566.2 984 82.3
FAN22G1243 Fragaria x ananassa HOM05D003956 ORTHO05D004850 0.0e+00 1563.5 977 81.5
FAN12G0499 Fragaria x ananassa HOM05D003956 ORTHO05D004850 0.0e+00 1563.1 987 80.7
FAN12G2270 Fragaria x ananassa HOM05D003956 ORTHO05D004850 0.0e+00 1563.1 987 80.7
Ca_21564_v3 Cicer arietinum L. HOM05D003956 ORTHO05D004850 0.0e+00 1561.2 890 87.1
MD13G1177400 Malus domestica HOM05D003956 ORTHO05D004850 0.0e+00 1561.2 874 88.9
FAN17G1489 Fragaria x ananassa HOM05D003956 ORTHO05D004850 0.0e+00 1559.7 986 80.8
Lj4g0014830 Lotus japonicus HOM05D003956 ORTHO05D004850 0.0e+00 1558.1 905 85.4
FAN07G1911 Fragaria x ananassa HOM05D003956 ORTHO05D004850 0.0e+00 1552.3 988 80.8
Phvul.003G098200 Phaseolus vulgaris HOM05D003956 ORTHO05D004850 0.0e+00 1552.0 977 81.2
THA.LOC104820228 Tarenaya hassleriana HOM05D003956 ORTHO05D004850 0.0e+00 1551.2 977 80.0
TPR.G28132 Trifolium pratense HOM05D003956 ORTHO05D004850 0.0e+00 1551.2 892 86.3
Cpa.g.sc16.74 Carica papaya HOM05D003956 ORTHO05D004850 0.0e+00 1546.9 891 86.9
Thecc.04G272600 Theobroma cacao HOM05D003956 ORTHO05D004850 0.0e+00 1543.1 941 84.0
Duzib151G0049 Durio zibethinus HOM05D003956 ORTHO05D004850 0.0e+00 1540.4 1004 80.5
Nn4g26122 Nelumbo nucifera HOM05D003956 ORTHO05D004850 0.0e+00 1532.7 874 86.7
MD16G1179300 Malus domestica HOM05D003956 ORTHO05D004850 0.0e+00 1528.5 857 89.1
Hma1.2p1_0511F.1_g169230 Hydrangea macrophylla HOM05D003956 ORTHO05D004850 0.0e+00 1527.7 880 87.6
Lalb_Chr13g0303991 Lupinus albus HOM05D003956 ORTHO05D004850 0.0e+00 1526.5 892 84.5
Aa31LG9G1910 Aethionema arabicum HOM05D003956 ORTHO05D004850 0.0e+00 1526.1 889 84.8
Lsat_1_v5_gn_5_51481 Lactuca sativa HOM05D003956 ORTHO05D004850 0.0e+00 1525.8 873 86.6
BcaNung00266 Brassica carinata HOM05D003956 ORTHO05D004850 0.0e+00 1525.4 972 78.3
AT4G15530 Arabidopsis thaliana HOM05D003956 ORTHO05D004850 0.0e+00 1525.0 969 79.2
MELO3C006585.2 Cucumis melo HOM05D003956 ORTHO05D004850 0.0e+00 1524.6 844 89.9
AL7G39990 Arabidopsis lyrata HOM05D003956 ORTHO05D004850 0.0e+00 1523.8 970 79.1
A01p22040 Brassica napus HOM05D003956 ORTHO05D004850 0.0e+00 1521.5 972 78.2
BraA01t02110Z Brassica rapa HOM05D003956 ORTHO05D004850 0.0e+00 1521.5 972 78.2
Thhalv10024330m.g Eutrema salsugineum HOM05D003956 ORTHO05D004850 0.0e+00 1521.5 981 78.3
Sp7g13780 Schrenkiella parvula HOM05D003956 ORTHO05D004850 0.0e+00 1521.5 894 84.1
QL06p005921 Quercus lobata HOM05D003956 ORTHO05D004850 0.0e+00 1520.4 873 86.5
C01p27430 Brassica napus HOM05D003956 ORTHO05D004850 0.0e+00 1519.2 969 78.2
SGA_v2.0_scaffold142G35643 Striga asiatica HOM05D003956 ORTHO05D004850 0.0e+00 1519.2 977 79.8
MSTRG.10031 Avicennia marina HOM05D003956 ORTHO05D004850 0.0e+00 1518.1 874 85.6
PSO302G0065 Papaver somniferum HOM05D003956 ORTHO05D004850 0.0e+00 1517.7 978 78.5
PGSC0003DMG400032107 Solanum tuberosum HOM05D003956 ORTHO05D004850 0.0e+00 1517.7 843 89.3
SalBow2G1708 Salvia bowleyana HOM05D003956 ORTHO05D004850 0.0e+00 1516.5 874 85.5
CDE08G0632 Ceratophyllum demersum HOM05D003956 ORTHO05D004850 0.0e+00 1515.7 892 83.7
Psat0ss7919g0200 Pisum sativum HOM05D003956 ORTHO05D004850 0.0e+00 1515.4 858 86.8
ATR0626G228 Amborella trichopoda HOM05D003956 ORTHO05D004850 0.0e+00 1513.8 875 84.8
PSO170G3340 Papaver somniferum HOM05D003956 ORTHO05D004850 0.0e+00 1513.0 893 83.9
DCAR_023283 Daucus carota HOM05D003956 ORTHO05D004850 0.0e+00 1511.5 972 80.3
C07p47210 Brassica napus HOM05D003956 ORTHO05D004850 0.0e+00 1510.4 973 77.8
BolC7t45243H Brassica oleracea HOM05D003956 ORTHO05D004850 0.0e+00 1509.6 973 77.7
CARHR222330 Cardamine hirsuta HOM05D003956 ORTHO05D004850 0.0e+00 1509.6 972 78.2
BolC1t02682H Brassica oleracea HOM05D003956 ORTHO05D004850 0.0e+00 1509.2 976 77.7
Sc25g0004550 Simmondsia chinensis HOM05D003956 ORTHO05D004850 0.0e+00 1509.2 858 87.3
BcaC06g32940 Brassica carinata HOM05D003956 ORTHO05D004850 0.0e+00 1508.4 973 77.6
BraA03t14011Z Brassica rapa HOM05D003956 ORTHO05D004850 0.0e+00 1508.4 973 77.8
MSTRG.10030 Avicennia marina HOM05D003956 ORTHO05D004850 0.0e+00 1506.5 880 84.5
Duzib151G0209 Durio zibethinus HOM05D003956 ORTHO05D004850 0.0e+00 1503.4 878 84.7
MD16G1179400 Malus domestica HOM05D003956 ORTHO05D004850 0.0e+00 1503.0 857 88.0
Thecc.04G272800 Theobroma cacao HOM05D003956 ORTHO05D004850 0.0e+00 1501.9 878 85.2
arahy.Tifrunner.gnm1.ann1.EQKV61 Arachis hypogaea HOM05D003956 ORTHO05D004850 0.0e+00 1498.8 937 82.0
BcaC09g50248 Brassica carinata HOM05D003956 ORTHO05D004850 0.0e+00 1496.5 873 84.4
arahy.Tifrunner.gnm1.ann1.YQ8C5N Arachis hypogaea HOM05D003956 ORTHO05D004850 0.0e+00 1490.7 853 87.0
A03p49170 Brassica napus HOM05D003956 ORTHO05D004850 0.0e+00 1490.3 959 77.7
CDE02G0811 Ceratophyllum demersum HOM05D003956 ORTHO05D004850 0.0e+00 1486.5 909 81.7
Os05g0405000 Oryza sativa ssp. japonica HOM05D003956 ORTHO05D004850 0.0e+00 1480.7 883 82.6
Zm00001eb349810 Zea mays HOM05D003956 ORTHO05D004850 0.0e+00 1471.8 900 80.8
Carub.0007s2635 Capsella rubella HOM05D003956 ORTHO05D004850 0.0e+00 1468.0 858 84.3
ClCG05G005590 Citrullus lanatus HOM05D003956 ORTHO05D004850 0.0e+00 1466.4 943 80.6
arahy.Tifrunner.gnm1.ann1.I3NY02 Arachis hypogaea HOM05D003956 ORTHO05D004850 0.0e+00 1461.4 902 81.3
Hund19586 Selenicereus undatus HOM05D003956 ORTHO05D004850 0.0e+00 1454.1 844 83.9
EL10Ac1g01820 Beta vulgaris HOM05D003956 ORTHO05D004850 0.0e+00 1450.6 892 82.3
Ah.11g043140 Amaranthus hybridus HOM05D003956 ORTHO05D004850 0.0e+00 1437.2 961 77.6
Rhsim02G0016700 Rhododendron simsii HOM05D003956 ORTHO05D004850 0.0e+00 1432.9 882 83.0
PGR031G3666 Punica granatum HOM05D003956 ORTHO05D004850 0.0e+00 1429.5 860 81.6
AagrBONN_evm.TU.Sc2ySwM_228.3276 Anthoceros agrestis HOM05D003956 ORTHO05D004850 0.0e+00 1423.7 904 77.1
Mapoly0009s0124 Marchantia polymorpha HOM05D003956 ORTHO05D004850 0.0e+00 1404.0 940 73.3
Oeu032695.1 Olea europaea HOM05D003956 ORTHO05D004850 0.0e+00 1403.3 774 89.5
Actinidia32373 Actinidia chinensis HOM05D003956 ORTHO05D004850 0.0e+00 1399.8 877 82.0
SMO351G0542 Selaginella moellendorffii HOM05D003956 ORTHO05D004850 0.0e+00 1398.3 872 78.1
Pp3c5_22540 Physcomitrium patens HOM05D003956 ORTHO05D004850 0.0e+00 1396.7 890 77.1
Eucgr.B01186 Eucalyptus grandis HOM05D003956 ORTHO05D004850 0.0e+00 1384.8 823 82.6
CSS0013368 Camellia sinensis var. sinensis HOM05D003956 ORTHO05D004850 0.0e+00 1379.0 803 86.9
Psat4g028880 Pisum sativum HOM05D003956 ORTHO05D004850 0.0e+00 1376.7 808 83.2
unitig_26.g8936 Utricularia gibba HOM05D003956 ORTHO05D004850 0.0e+00 1369.8 874 79.5
arahy.Tifrunner.gnm1.ann1.DC6B04 Arachis hypogaea HOM05D003956 ORTHO05D004850 0.0e+00 1367.8 902 77.1
CSS0018237 Camellia sinensis var. sinensis HOM05D003956 ORTHO05D004850 0.0e+00 1348.6 886 80.4
Hma1.2p1_2025F.1_g311530 Hydrangea macrophylla HOM05D003956 ORTHO05D004850 0.0e+00 1338.6 880 79.4
Gohir.A10G105700 Gossypium hirsutum HOM05D003956 ORTHO05D004850 0.0e+00 1318.9 823 81.8
vmacro15287 Vaccinium macrocarpon HOM05D003956 ORTHO05D004850 0.0e+00 1305.0 875 77.4
BcaC09g50243 Brassica carinata HOM05D003956 ORTHO05D004850 0.0e+00 1241.9 779 79.3
Zm00001eb287770 Zea mays HOM05D003956 ORTHO05D004850 0.0e+00 1222.6 730 81.9
TPR.G28133 Trifolium pratense HOM05D003956 ORTHO05D004850 0.0e+00 1215.3 874 71.1
MCO12G211 Micromonas commoda HOM05D003956 ORTHO05D004850 0.0e+00 1213.0 857 69.8
Cre17.g734548 Chlamydomonas reinhardtii HOM05D003956 ORTHO05D004850 0.0e+00 1202.6 898 67.0
unitig_749.g14056 Utricularia gibba HOM05D003956 ORTHO05D004850 0.0e+00 1103.6 633 85.3
Migut.G00280 Erythranthe guttata HOM05D003956 ORTHO05D004850 1.7e-305 1052.7 581 88.6
Cre10.g424750 Chlamydomonas reinhardtii HOM05D003956 ORTHO05D004850 4.1e-304 1048.1 883 60.4
Medtr4g118350 Medicago truncatula HOM05D003956 ORTHO05D004850 7.9e-279 964.1 567 84.1
MCO01G687 Micromonas commoda HOM05D003956 ORTHO05D004850 3.4e-258 895.6 908 54.0
AUR62034950 Chenopodium quinoa HOM05D003956 ORTHO05D004850 6.5e-225 785.0 469 84.0
AUR62035455 Chenopodium quinoa HOM05D003956 ORTHO05D004850 2.1e-223 780.0 474 83.1
AUR62035456 Chenopodium quinoa HOM05D003956 ORTHO05D004850 3.0e-214 749.6 505 77.2
HanXRQChr03g0080571 Helianthus annuus HOM05D003956 ORTHO05D004850 1.5e-197 694.1 422 82.0
AUR62034949 Chenopodium quinoa HOM05D003956 ORTHO05D004850 2.3e-193 680.2 451 77.6
CBR_g50184 Chara braunii HOM05D003956 ORTHO05D004850 1.4e-187 661.0 744 50.3
SGA_v2.0_scaffold86G26866 Striga asiatica HOM05D003956 ORTHO05D004850 3.3e-168 596.7 481 66.7
BcaC06g33414 Brassica carinata HOM05D003956 ORTHO05D004850 1.0e-161 575.1 338 84.0
SGA_v2.0_scaffold86G26865 Striga asiatica HOM05D003956 ORTHO05D004850 9.0e-142 508.8 391 68.0
Medtr4g118355 Medicago truncatula HOM05D003956 ORTHO05D004850 1.6e-138 498.0 296 83.4
AUR62034328 Chenopodium quinoa HOM05D003956 ORTHO05D004850 6.8e-113 412.9 423 55.1
arahy.Tifrunner.gnm1.ann1.9WT78J Arachis hypogaea HOM05D003956 ORTHO05D004850 3.4e-104 384.0 319 65.2
HanXRQChr16g0518081 Helianthus annuus HOM05D003956 ORTHO05D004850 4.0e-97 360.5 232 77.6
arahy.Tifrunner.gnm1.ann1.HZTZ4X Arachis hypogaea HOM05D003956 ORTHO05D004850 6.8e-89 333.2 275 65.1
arahy.Tifrunner.gnm1.ann1.7LSJ4G Arachis hypogaea HOM05D003956 ORTHO05D004850 1.9e-67 261.9 227 63.9
arahy.Tifrunner.gnm1.ann1.989M5Y Arachis hypogaea HOM05D003956 ORTHO05D004850 1.1e-62 246.1 216 61.1
unitig_749.g14057 Utricularia gibba HOM05D003956 ORTHO05D004850 4.8e-58 230.7 151 76.2
AagrBONN_evm.TU.Sc2ySwM_362.937 Anthoceros agrestis HOM05D003956 ORTHO05D004850 9.9e-48 196.4 119 79.0
arahy.Tifrunner.gnm1.ann1.S9XVUY Arachis hypogaea HOM05D003956 ORTHO05D004850 5.3e-41 174.1 268 42.5
Pp3c6_6540 Physcomitrium patens HOM05D003956 ORTHO05D004850 4.2e-38 164.5 114 70.2
BcaC09g50244 Brassica carinata HOM05D003956 ORTHO05D004850 5.3e-33 147.5 85 84.7
Lsat_1_v5_gn_2_81921 Lactuca sativa HOM05D005278 ORTHO05D006500 6.5e-31 140.6 91 74.7
GSVIVG01018502001 Vitis vinifera HOM05D003956 ORTHO05D004850 6.5e-31 140.6 81 86.4
arahy.Tifrunner.gnm1.ann1.LGH8AH Arachis hypogaea HOM05D003956 ORTHO05D004850 2.5e-30 138.7 83 81.9
Pp3s196_40 Physcomitrium patens HOM05D003956 ORTHO05D044360 4.5e-24 117.9 451 28.4
QL06p005983 Quercus lobata HOM05D003956 ORTHO05D004850 4.5e-24 117.9 130 53.8
arahy.Tifrunner.gnm1.ann1.G5444S Arachis hypogaea HOM05D003956 ORTHO05D004850 2.9e-23 115.2 95 65.3
CSS0003111 Camellia sinensis var. sinensis HOM05D031629 ORTHO05D113168 2.5e-19 102.1 107 58.9
CSS0017095 Camellia sinensis var. sinensis HOM05D031629 ORTHO05D109714 2.5e-19 102.1 107 58.9
CSS0048935 Camellia sinensis var. sinensis HOM05D031629 ORTHO05D110355 5.7e-19 100.9 107 57.9
TPR.G26738 Trifolium pratense HOM05D003956 ORTHO05D000576 2.2e-18 99.0 56 76.8
TPR.G35464 Trifolium pratense HOM05D003956 ORTHO05D004850 5.9e-16 90.9 60 68.3
MBI15_g32557_MAGBIO Magnolia biondii HOM05D001670 ORTHO05D011598 1.5e-11 76.3 57 68.4
arahy.Tifrunner.gnm1.ann1.57CL3B Arachis hypogaea HOM05D003956 ORTHO05D004850 3.3e-11 75.1 51 72.5
arahy.Tifrunner.gnm1.ann1.V4Y3U4 Arachis hypogaea HOM05D003956 ORTHO05D004850 4.4e-11 74.7 49 75.5
HanXRQChr09g0261911 Helianthus annuus HOM05D000495 ORTHO05D000357 2.8e-10 72.0 43 76.7
SGA_v2.0_scaffold86G26869 Striga asiatica HOM05D000924 ORTHO05D001209 8.2e-10 70.5 124 37.1
Nn8g40271 Nelumbo nucifera HOM05D001541 ORTHO05D001465 1.1e-09 70.1 101 44.6
Pp3c5_22980 Physcomitrium patens HOM05D003956 ORTHO05D004850 9.1e-09 67.0 43 72.1
arahy.Tifrunner.gnm1.ann1.GGZS5I Arachis hypogaea HOM05D003956 ORTHO05D004850 1.3e-07 63.2 56 62.5


User provided reference genes

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