Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim04G0207200 Rhododendron simsii HOM05D004860 ORTHO05D006366 4.7e-194 681.0 348 100.0
vmacro08274 Vaccinium macrocarpon HOM05D004860 ORTHO05D006366 9.7e-139 497.3 348 77.9
CSS0038220 Camellia sinensis var. sinensis HOM05D004860 ORTHO05D006366 8.0e-133 477.6 334 76.3
Actinidia40192 Actinidia chinensis HOM05D004860 ORTHO05D006366 1.8e-132 476.5 335 75.5
Dinv38393 Davidia involucrata HOM05D001530 ORTHO05D004168 5.9e-128 461.5 312 76.6
Potri.008G202300 Populus trichocarpa HOM05D004860 ORTHO05D006366 1.1e-126 457.2 334 71.6
FvH4_4g14470 Fragaria vesca HOM05D004860 ORTHO05D006366 4.0e-124 448.7 334 70.7
Solyc01g080140.3 Solanum lycopersicum HOM05D004860 ORTHO05D006366 4.0e-124 448.7 331 71.6
Lj6A565G28 Lonicera japonica HOM05D004860 ORTHO05D006366 5.2e-124 448.4 332 70.8
Sopen01g031920 Solanum pennellii HOM05D004860 ORTHO05D006366 8.8e-124 447.6 331 71.6
FAN07G1456 Fragaria x ananassa HOM05D004860 ORTHO05D006366 1.5e-123 446.8 341 70.4
FAN12G3962 Fragaria x ananassa HOM05D004860 ORTHO05D006366 3.4e-123 445.7 334 70.4
PGR031G2771 Punica granatum HOM05D004860 ORTHO05D006366 7.5e-123 444.5 311 73.6
FAN22G2324 Fragaria x ananassa HOM05D004860 ORTHO05D006366 9.8e-123 444.1 337 70.3
TAR636G2819 Trochodendron aralioides HOM05D004860 ORTHO05D006366 9.8e-123 444.1 326 71.2
MD16G1183500 Malus domestica HOM05D004860 ORTHO05D006366 1.7e-122 443.4 314 73.6
CANSAT78G2493 Cannabis sativa HOM05D004860 ORTHO05D006366 3.7e-122 442.2 314 72.9
Nitab4.5_0001247g0010 Nicotiana tabacum HOM05D004860 ORTHO05D006366 3.7e-122 442.2 326 71.8
RcHm_v2.0_Chr4g0418381 Rosa chinensis HOM05D004860 ORTHO05D006366 1.8e-121 439.9 335 69.3
THA.LOC104822311 Tarenaya hassleriana HOM05D004860 ORTHO05D006366 1.8e-121 439.9 320 70.9
Thecc.04G221400 Theobroma cacao HOM05D004860 ORTHO05D006366 4.1e-121 438.7 324 70.7
THA.LOC104818790 Tarenaya hassleriana HOM05D004860 ORTHO05D006366 5.4e-121 438.3 325 71.1
CiPaw.02G092200 Carya illinoinensis HOM05D004860 ORTHO05D006366 7.0e-121 438.0 315 72.7
Thhalv10013904m.g Eutrema salsugineum HOM05D004860 ORTHO05D006366 1.2e-120 437.2 316 71.2
MELO3C006570.2 Cucumis melo HOM05D004860 ORTHO05D006366 2.0e-120 436.4 315 72.7
Oeu029304.1 Olea europaea HOM05D004860 ORTHO05D006366 2.0e-120 436.4 318 71.4
ClCG05G005460 Citrullus lanatus HOM05D004860 ORTHO05D006366 4.5e-120 435.3 315 72.4
MD13G1182900 Malus domestica HOM05D004860 ORTHO05D006366 7.7e-120 434.5 314 72.3
TWI73G0632 Tripterygium wilfordii HOM05D004860 ORTHO05D006366 1.7e-119 433.3 314 71.7
Sp6g25330 Schrenkiella parvula HOM05D004860 ORTHO05D006366 2.2e-119 433.0 316 70.6
AL6G30430 Arabidopsis lyrata HOM05D004860 ORTHO05D006366 3.8e-119 432.2 318 70.4
C03p10800 Brassica napus HOM05D004860 ORTHO05D006366 3.8e-119 432.2 316 70.6
BolC3t13554H Brassica oleracea HOM05D004860 ORTHO05D006366 3.8e-119 432.2 316 70.6
QL06p004255 Quercus lobata HOM05D004860 ORTHO05D006366 3.8e-119 432.2 315 73.0
AT5G19050 Arabidopsis thaliana HOM05D004860 ORTHO05D006366 5.0e-119 431.8 318 70.4
Carub.0006s1737 Capsella rubella HOM05D004860 ORTHO05D006366 5.0e-119 431.8 321 69.8
TAR365G0160 Trochodendron aralioides HOM05D004860 ORTHO05D006366 6.5e-119 431.4 316 71.2
CsaV3_3G013760 Cucumis sativus L. HOM05D004860 ORTHO05D006366 1.5e-118 430.3 315 71.7
SalBow5G0733 Salvia bowleyana HOM05D004860 ORTHO05D006366 1.5e-118 430.3 344 68.0
BcaB01g05289 Brassica carinata HOM05D004860 ORTHO05D006366 1.9e-118 429.9 316 70.3
Glyma.17G017300 Glycine max HOM05D004860 ORTHO05D006366 2.5e-118 429.5 329 69.9
A03p09270 Brassica napus HOM05D004860 ORTHO05D006366 3.2e-118 429.1 316 70.3
BraA03t10247Z Brassica rapa HOM05D004860 ORTHO05D006366 3.2e-118 429.1 316 70.3
CARHR193940 Cardamine hirsuta HOM05D004860 ORTHO05D006366 3.2e-118 429.1 314 70.7
SalBow5G4413 Salvia bowleyana HOM05D004860 ORTHO05D006366 3.2e-118 429.1 341 68.3
Sed0000368 Sechium edule HOM05D004860 ORTHO05D006366 4.2e-118 428.7 340 67.9
Glyma.07G256800 Glycine max HOM05D004860 ORTHO05D006366 5.5e-118 428.3 330 69.7
Nn4g26191 Nelumbo nucifera HOM05D004860 ORTHO05D006366 7.2e-118 427.9 322 69.3
Atru.chr4.2574 Acer truncatum HOM05D004860 ORTHO05D006366 9.4e-118 427.6 334 68.0
Ciclev10005293m.g Citrus clementina HOM05D004860 ORTHO05D006366 2.7e-117 426.0 314 72.0
Aa31LG11G10670 Aethionema arabicum HOM05D004860 ORTHO05D006366 4.7e-117 425.2 327 67.9
Eucgr.D02658 Eucalyptus grandis HOM05D004860 ORTHO05D006366 4.7e-117 425.2 317 70.7
BcaB01g04878 Brassica carinata HOM05D004860 ORTHO05D006366 6.1e-117 424.9 316 69.9
Manes.15G022900 Manihot esculenta HOM05D004860 ORTHO05D006366 1.4e-116 423.7 337 66.2
Duzib268G1873 Durio zibethinus HOM05D004860 ORTHO05D006366 1.8e-116 423.3 337 66.8
Gohir.A05G316600 Gossypium hirsutum HOM05D004860 ORTHO05D006366 1.8e-116 423.3 326 68.7
Peaxi162Scf01766g00011 Petunia axillaris HOM05D004860 ORTHO05D006366 2.3e-116 422.9 326 70.6
Migut.N00151 Erythranthe guttata HOM05D004860 ORTHO05D006366 3.0e-116 422.5 344 66.0
Lalb_Chr07g0177321 Lupinus albus HOM05D004860 ORTHO05D006366 3.0e-116 422.5 312 69.9
GSVIVG01017886001 Vitis vinifera HOM05D004860 ORTHO05D006366 4.0e-116 422.2 296 73.6
MSTRG.24756 Avicennia marina HOM05D004860 ORTHO05D006366 5.2e-116 421.8 343 65.9
ECA240G4413 Erigeron canadensis HOM05D004860 ORTHO05D006366 6.8e-116 421.4 293 72.7
Medtr4g117310 Medicago truncatula HOM05D004860 ORTHO05D006366 1.5e-115 420.2 325 68.3
arahy.Tifrunner.gnm1.ann1.PDW3QZ Arachis hypogaea HOM05D004860 ORTHO05D006366 2.0e-115 419.9 325 68.6
BcaB08g36622 Brassica carinata HOM05D004860 ORTHO05D006366 2.6e-115 419.5 316 68.7
Ah.07g203980 Amaranthus hybridus HOM05D004860 ORTHO05D006366 3.4e-115 419.1 319 68.7
arahy.Tifrunner.gnm1.ann1.K193BP Arachis hypogaea HOM05D004860 ORTHO05D006366 5.7e-115 418.3 315 69.8
Dinv44480 Davidia involucrata HOM05D001530 ORTHO05D004168 7.5e-115 417.9 291 74.6
Lj4g0005512 Lotus japonicus HOM05D004860 ORTHO05D006366 1.3e-114 417.2 314 69.4
CAN.G183.30 Capsicum annuum HOM05D004860 ORTHO05D006366 2.8e-114 416.0 325 69.2
Cc03_g03100 Coffea canephora HOM05D004860 ORTHO05D006366 3.7e-114 415.6 298 70.5
A10p20640 Brassica napus HOM05D004860 ORTHO05D006366 4.9e-114 415.2 318 67.9
BolC9t58612H Brassica oleracea HOM05D004860 ORTHO05D006366 6.3e-114 414.8 317 68.1
C09p57430 Brassica napus HOM05D004860 ORTHO05D006366 1.1e-113 414.1 317 68.1
Nn1g02160 Nelumbo nucifera HOM05D004860 ORTHO05D006366 1.1e-113 414.1 323 66.6
BcaC04g18624 Brassica carinata HOM05D004860 ORTHO05D006366 1.4e-113 413.7 317 67.8
HanXRQChr09g0248101 Helianthus annuus HOM05D004860 ORTHO05D006366 2.4e-113 412.9 281 75.1
TPR.G20138 Trifolium pratense HOM05D004860 ORTHO05D006366 2.4e-113 412.9 326 66.0
COL.COLO4_21645 Corchorus olitorius HOM05D004860 ORTHO05D006366 3.1e-113 412.5 297 71.0
Duzib212G0960 Durio zibethinus HOM05D004860 ORTHO05D006366 3.1e-113 412.5 343 65.0
BraA10t44127Z Brassica rapa HOM05D004860 ORTHO05D006366 4.1e-113 412.1 318 67.6
Haze_00965 Corylus avellana HOM05D004860 ORTHO05D006366 5.4e-113 411.8 392 59.4
Psat4g031440 Pisum sativum HOM05D004860 ORTHO05D006366 7.0e-113 411.4 317 68.1
Lsat_1_v5_gn_7_67361 Lactuca sativa HOM05D004860 ORTHO05D006366 1.6e-112 410.2 320 69.1
Gorai.009G340700 Gossypium raimondii HOM05D004860 ORTHO05D006366 3.5e-112 409.1 340 65.3
Lj3C761T9 Lonicera japonica HOM05D004860 ORTHO05D006366 4.5e-112 408.7 319 66.5
Phvul.003G093000 Phaseolus vulgaris HOM05D004860 ORTHO05D006366 2.3e-111 406.4 314 67.5
Ca_21591_v3 Cicer arietinum L. HOM05D004860 ORTHO05D006366 8.6e-111 404.4 298 69.5
EL10Ac3g06352 Beta vulgaris HOM05D004860 ORTHO05D006366 1.5e-110 403.7 378 59.0
Ah.13g074180 Amaranthus hybridus HOM05D004860 ORTHO05D006366 7.3e-110 401.4 316 66.8
TWI53G0789 Tripterygium wilfordii HOM05D004860 ORTHO05D006366 9.5e-110 401.0 293 70.6
MBI17_g12009_MAGBIO Magnolia biondii HOM05D004860 ORTHO05D006366 2.1e-109 399.8 316 68.7
AUR62030079 Chenopodium quinoa HOM05D004860 ORTHO05D006366 6.1e-109 398.3 274 73.4
Cfa015580 Carpinus fangiana HOM05D004860 ORTHO05D006366 6.8e-108 394.8 298 71.1
PSO170G1688 Papaver somniferum HOM05D004860 ORTHO05D006366 1.2e-107 394.0 327 65.7
SGA_v2.0_scaffold166G38376 Striga asiatica HOM05D004860 ORTHO05D006366 2.6e-107 392.9 330 65.5
Actinidia12990 Actinidia chinensis HOM05D004860 ORTHO05D006366 3.4e-107 392.5 351 64.7
PSO407G0112 Papaver somniferum HOM05D004860 ORTHO05D006366 4.4e-107 392.1 325 65.5
Aqoxy2G03261 Aquilegia oxysepala HOM05D004860 ORTHO05D006366 1.8e-105 386.7 319 65.2
unitig_8.g2879 Utricularia gibba HOM05D004860 ORTHO05D006366 4.1e-105 385.6 300 66.7
Manes.03G184900 Manihot esculenta HOM05D004860 ORTHO05D006366 9.2e-105 384.4 296 67.6
CDE02G3435 Ceratophyllum demersum HOM05D004860 ORTHO05D006366 3.5e-104 382.5 323 62.2
Migut.G00288 Erythranthe guttata HOM05D004860 ORTHO05D006366 1.7e-103 380.2 334 62.9
CiPaw.01G159800 Carya illinoinensis HOM05D004860 ORTHO05D006366 2.3e-103 379.8 314 65.3
Hund12197 Selenicereus undatus HOM05D004860 ORTHO05D000105 1.1e-102 377.5 423 51.8
SEGI_28969 Sequoiadendron giganteum HOM05D004860 ORTHO05D006366 1.1e-102 377.5 300 64.7
Os07g0211800 Oryza sativa ssp. japonica HOM05D004860 ORTHO05D006366 3.3e-102 375.9 278 67.6
ATR0626G115 Amborella trichopoda HOM05D004860 ORTHO05D006366 4.3e-102 375.6 293 66.9
Prupe.1G151200 Prunus persica HOM05D004860 ORTHO05D006366 5.6e-102 375.2 260 73.8
Cpa.g.sc16.26 Carica papaya HOM05D004860 ORTHO05D006366 2.1e-101 373.2 314 64.3
Gohir.D05G318100 Gossypium hirsutum HOM05D004860 ORTHO05D006366 1.2e-99 367.5 326 62.0
AUR62038223 Chenopodium quinoa HOM05D004860 ORTHO05D006366 3.4e-99 365.9 260 72.3
Zm00001eb303280 Zea mays HOM05D004860 ORTHO05D006366 1.9e-97 360.1 333 57.1
SMO119G0283 Selaginella moellendorffii HOM05D004860 ORTHO05D006366 1.5e-91 340.5 277 63.9
Sabra08G0159200 Salix brachista HOM05D004860 ORTHO05D006366 7.5e-91 338.2 293 62.8
AagrBONN_evm.TU.Sc2ySwM_117.2400 Anthoceros agrestis HOM05D004860 ORTHO05D006366 1.6e-88 330.5 277 60.6
Pp3c4_4720 Physcomitrium patens HOM05D004860 ORTHO05D006366 6.0e-88 328.6 273 60.1
Sc13g0003950 Simmondsia chinensis HOM05D004860 ORTHO05D006366 8.1e-85 318.2 256 66.8
VMungo1215G0515 Vigna mungo HOM05D004860 ORTHO05D006366 9.9e-83 311.2 271 64.6
Mapoly0095s0018 Marchantia polymorpha HOM05D004860 ORTHO05D006366 7.1e-81 305.1 262 60.7
SalBow2G3077 Salvia bowleyana HOM05D004860 ORTHO05D006366 1.2e-75 287.7 298 55.0
Oeu017197.2 Olea europaea HOM05D004860 ORTHO05D006366 2.7e-72 276.6 192 73.4
SHI00370 Sapria himalayana HOM05D004860 ORTHO05D000023 3.1e-60 236.5 139 82.7
HPP92_027344 Vanilla planifolia HOM05D004860 ORTHO05D006366 1.6e-53 214.2 220 55.9
Nitab4.5_0002954g0030 Nicotiana tabacum HOM05D004860 ORTHO05D006366 2.8e-53 213.4 188 63.8
Actinidia23474 Actinidia chinensis HOM05D004860 ORTHO05D006366 4.5e-51 206.1 237 55.7
CBR_g23274 Chara braunii HOM05D004860 ORTHO05D006366 7.9e-40 168.7 129 61.2
Eucgr.B01143 Eucalyptus grandis HOM05D004860 ORTHO05D006366 2.4e-36 157.1 104 73.1
FAN17G0307 Fragaria x ananassa HOM05D004860 ORTHO05D006366 1.2e-35 154.8 90 82.2
Hund22791 Selenicereus undatus HOM05D004860 ORTHO05D006366 7.2e-33 145.6 83 79.5
PRCOL_00003006 Prasinoderma coloniale HOM05D004860 ORTHO05D006366 4.4e-30 136.3 279 37.6
SHI00369 Sapria himalayana HOM05D004860 ORTHO05D006366 3.1e-28 130.2 101 65.3
Cre06.g283034 Chlamydomonas reinhardtii HOM05D004860 ORTHO05D006366 2.0e-27 127.5 298 31.9
VMungo1215G0712 Vigna mungo HOM05D004860 ORTHO05D006366 3.6e-24 116.7 59 88.1
Cc09_g08330 Coffea canephora HOM05D004860 ORTHO05D006366 1.1e-22 111.7 63 76.2
Cc02_g31730 Coffea canephora HOM05D004860 ORTHO05D006366 4.4e-22 109.8 59 79.7
HPP92_027343 Vanilla planifolia HOM05D004860 ORTHO05D006366 8.2e-21 105.5 71 70.4
Mapoly0174s0021 Marchantia polymorpha HOM05D004860 ORTHO05D006366 9.1e-20 102.1 141 44.0
A02p05180 Brassica napus HOM05D004860 ORTHO05D006366 7.7e-19 99.0 91 60.4
BraA02t05478Z Brassica rapa HOM05D004860 ORTHO05D006366 1.0e-18 98.6 93 61.3
THA.LOC104820105 Tarenaya hassleriana HOM05D001530 ORTHO05D004168 2.2e-18 97.4 54 87.0
Cc01_g03740 Coffea canephora HOM05D004860 ORTHO05D006366 6.5e-18 95.9 68 66.2
CBR_g23273 Chara braunii HOM05D004860 ORTHO05D006366 4.0e-15 86.7 81 48.1
Cfa023854 Carpinus fangiana HOM05D004860 ORTHO05D126341 1.3e-13 81.6 287 28.9
QL06p004359 Quercus lobata HOM05D004860 ORTHO05D337479 3.0e-07 60.5 56 60.7
HPP92_017189 Vanilla planifolia HOM05D004860 ORTHO05D006366 5.2e-07 59.7 33 81.8
BcaB07g33046 Brassica carinata HOM05D004860 ORTHO05D005738 1.5e-06 58.2 50 60.0


User provided reference genes

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