Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim04G0201900 Rhododendron simsii HOM05D000384 ORTHO05D006260 6.7e-73 277.3 148 100.0
CSS0025710 Camellia sinensis var. sinensis HOM05D000384 ORTHO05D006260 1.1e-64 250.0 148 87.2
CSS0048526 Camellia sinensis var. sinensis HOM05D000384 ORTHO05D006260 2.0e-64 249.2 148 86.5
CSS0003915 Camellia sinensis var. sinensis HOM05D000384 ORTHO05D006260 1.3e-63 246.5 148 86.5
Actinidia40142 Actinidia chinensis HOM05D000384 ORTHO05D006260 2.2e-63 245.7 148 85.1
Dinv44537 Davidia involucrata HOM05D000384 ORTHO05D000468 5.9e-61 237.7 145 85.5
Cc03_g03830 Coffea canephora HOM05D000384 ORTHO05D006260 1.9e-59 232.6 148 80.4
GSVIVG01017982001 Vitis vinifera HOM05D000384 ORTHO05D006260 1.6e-58 229.6 149 81.2
Nitab4.5_0007474g0030 Nicotiana tabacum HOM05D000384 ORTHO05D006260 8.0e-58 227.3 143 82.5
Haze_00893 Corylus avellana HOM05D000384 ORTHO05D006260 1.0e-57 226.9 149 79.2
Sopen06g018540 Solanum pennellii HOM05D000384 ORTHO05D006260 1.0e-57 226.9 142 81.0
TWI09G1519 Tripterygium wilfordii HOM05D000384 ORTHO05D006260 1.0e-57 226.9 149 79.2
Oeu031225.1 Olea europaea HOM05D000384 ORTHO05D006260 1.4e-57 226.5 145 81.4
Oeu031229.1 Olea europaea HOM05D000384 ORTHO05D006260 1.4e-57 226.5 145 81.4
Hma1.2p1_0745F.1_g212050 Hydrangea macrophylla HOM05D000384 ORTHO05D006260 2.3e-57 225.7 147 80.3
DCAR_027219 Daucus carota HOM05D000384 ORTHO05D006260 3.0e-57 225.3 147 81.6
Nitab4.5_0007368g0020 Nicotiana tabacum HOM05D000384 ORTHO05D006260 3.0e-57 225.3 143 81.1
CAN.G136.5 Capsicum annuum HOM05D000384 ORTHO05D006260 6.7e-57 224.2 142 80.3
Sc13g0004430 Simmondsia chinensis HOM05D000384 ORTHO05D006260 6.7e-57 224.2 147 78.2
DCAR_024164 Daucus carota HOM05D000384 ORTHO05D006260 1.5e-56 223.0 147 81.0
COL.COLO4_10907 Corchorus olitorius HOM05D000384 ORTHO05D006260 2.0e-56 222.6 143 79.7
QL06p002227 Quercus lobata HOM05D000384 ORTHO05D006260 2.0e-56 222.6 148 79.1
TAR636G3061 Trochodendron aralioides HOM05D000384 ORTHO05D006260 2.0e-56 222.6 149 78.5
Lj3E734T1 Lonicera japonica HOM05D000384 ORTHO05D006260 2.6e-56 222.2 139 81.3
Duzib128G1753 Durio zibethinus HOM05D000384 ORTHO05D006260 3.3e-56 221.9 141 80.1
CAN.G1280.23 Capsicum annuum HOM05D000384 ORTHO05D006260 5.7e-56 221.1 143 79.7
Cfa015651 Carpinus fangiana HOM05D000384 ORTHO05D006260 7.5e-56 220.7 150 77.3
Duzib114G0643 Durio zibethinus HOM05D000384 ORTHO05D006260 7.5e-56 220.7 141 80.1
PGSC0003DMG400016332 Solanum tuberosum HOM05D000384 ORTHO05D006260 7.5e-56 220.7 143 79.7
Glyma.13G124100 Glycine max HOM05D000384 ORTHO05D006260 9.7e-56 220.3 141 80.9
Peaxi162Scf00579g00001 Petunia axillaris HOM05D000384 ORTHO05D006260 9.7e-56 220.3 143 79.7
arahy.Tifrunner.gnm1.ann1.JHWM2T Arachis hypogaea HOM05D000384 ORTHO05D006260 1.3e-55 219.9 149 77.2
arahy.Tifrunner.gnm1.ann1.U3DZXE Arachis hypogaea HOM05D000384 ORTHO05D006260 1.3e-55 219.9 149 77.2
Glyma.06G316000 Glycine max HOM05D000384 ORTHO05D006260 1.3e-55 219.9 141 80.1
MBI11_g07539_MAGBIO Magnolia biondii HOM05D000384 ORTHO05D006260 1.3e-55 219.9 142 78.9
Sc19g0004110 Simmondsia chinensis HOM05D000384 ORTHO05D006260 1.3e-55 219.9 148 76.4
CsaV3_5G038350 Cucumis sativus L. HOM05D000384 ORTHO05D006260 2.2e-55 219.2 146 78.1
Gohir.D10G218900 Gossypium hirsutum HOM05D000384 ORTHO05D006260 2.8e-55 218.8 143 79.0
Gorai.011G245600 Gossypium raimondii HOM05D000384 ORTHO05D006260 2.8e-55 218.8 143 79.0
Atru.chr4.720 Acer truncatum HOM05D000384 ORTHO05D006260 3.7e-55 218.4 149 76.5
Ciclev10006154m.g Citrus clementina HOM05D000384 ORTHO05D006260 3.7e-55 218.4 149 76.5
Glyma.05G087300 Glycine max HOM05D000384 ORTHO05D006260 3.7e-55 218.4 141 80.1
Lalb_Chr19g0132471 Lupinus albus HOM05D000384 ORTHO05D006260 3.7e-55 218.4 149 75.2
MSTRG.24739 Avicennia marina HOM05D000384 ORTHO05D006260 4.8e-55 218.0 144 77.8
Gohir.A10G210600 Gossypium hirsutum HOM05D000384 ORTHO05D006260 4.8e-55 218.0 143 79.0
arahy.Tifrunner.gnm1.ann1.T2NEZJ Arachis hypogaea HOM05D000384 ORTHO05D006260 6.3e-55 217.6 149 76.5
Lj3g0015206 Lotus japonicus HOM05D000384 ORTHO05D006260 6.3e-55 217.6 140 80.0
Potri.008G153900 Populus trichocarpa HOM05D000384 ORTHO05D006260 6.3e-55 217.6 145 77.2
Thecc.10G059100 Theobroma cacao HOM05D000384 ORTHO05D006260 6.3e-55 217.6 141 79.4
Potri.001G240200 Populus trichocarpa HOM05D000384 ORTHO05D006260 8.2e-55 217.2 145 77.2
RcHm_v2.0_Chr1g0362551 Rosa chinensis HOM05D000384 ORTHO05D006260 8.2e-55 217.2 145 77.2
RcHm_v2.0_Chr4g0387021 Rosa chinensis HOM05D000384 ORTHO05D006260 8.2e-55 217.2 145 77.2
AUR62019660 Chenopodium quinoa HOM05D000384 ORTHO05D006260 1.1e-54 216.9 147 74.1
Phvul.008G161600 Phaseolus vulgaris HOM05D000384 ORTHO05D006260 1.1e-54 216.9 141 78.7
Prupe.1G014300 Prunus persica HOM05D000384 ORTHO05D006260 1.1e-54 216.9 145 79.3
arahy.Tifrunner.gnm1.ann1.K8JXLT Arachis hypogaea HOM05D000384 ORTHO05D006260 1.4e-54 216.5 148 77.0
ClCG05G005160 Citrullus lanatus HOM05D000384 ORTHO05D006260 1.4e-54 216.5 146 76.7
Sabra16G0144900 Salix brachista HOM05D000384 ORTHO05D006260 1.8e-54 216.1 149 74.5
VMungo0720G1921 Vigna mungo HOM05D000384 ORTHO05D006260 1.8e-54 216.1 139 79.1
MELO3C022017.2 Cucumis melo HOM05D000384 ORTHO05D006260 2.4e-54 215.7 146 76.7
Hund25029 Selenicereus undatus HOM05D000384 ORTHO05D006260 2.4e-54 215.7 148 75.0
Atru.chr4.2459 Acer truncatum HOM05D000384 ORTHO05D006260 3.1e-54 215.3 148 77.0
CANSAT64G0565 Cannabis sativa HOM05D000384 ORTHO05D006260 3.1e-54 215.3 146 75.3
Sed0018578 Sechium edule HOM05D000384 ORTHO05D006260 3.1e-54 215.3 148 75.7
Migut.N00188 Erythranthe guttata HOM05D000384 ORTHO05D006260 4.1e-54 214.9 144 78.5
MD16G1194400 Malus domestica HOM05D000384 ORTHO05D006260 5.3e-54 214.5 143 79.0
Cpa.g.sc58.101 Carica papaya HOM05D000384 ORTHO05D006260 7.0e-54 214.2 139 79.9
Nn3g18529 Nelumbo nucifera HOM05D000384 ORTHO05D006260 7.0e-54 214.2 144 77.8
FAN07G0857 Fragaria x ananassa HOM05D000384 ORTHO05D006260 9.1e-54 213.8 145 75.9
AUR62013951 Chenopodium quinoa HOM05D000384 ORTHO05D006260 1.2e-53 213.4 141 75.9
SGA_v2.0_scaffold522G52709 Striga asiatica HOM05D000384 ORTHO05D006260 1.2e-53 213.4 144 77.8
EL10Ac4g08427 Beta vulgaris HOM05D000384 ORTHO05D006260 1.6e-53 213.0 148 73.0
Medtr3g007250 Medicago truncatula HOM05D000384 ORTHO05D006260 1.6e-53 213.0 149 73.8
TPR.G25531 Trifolium pratense HOM05D000384 ORTHO05D006260 2.0e-53 212.6 149 73.8
Eucgr.H03463 Eucalyptus grandis HOM05D000384 ORTHO05D006260 2.7e-53 212.2 134 81.3
Manes.03G178300 Manihot esculenta HOM05D000384 ORTHO05D006260 2.7e-53 212.2 144 76.4
Psat0s3755g0120 Pisum sativum HOM05D000384 ORTHO05D006260 2.7e-53 212.2 140 76.4
RcHm_v2.0_Chr4g0416141 Rosa chinensis HOM05D000384 ORTHO05D006260 2.7e-53 212.2 145 75.9
Ca_14031_v3 Cicer arietinum L. HOM05D000384 ORTHO05D006260 3.5e-53 211.8 149 73.8
CiPaw.02G097700 Carya illinoinensis HOM05D000384 ORTHO05D006260 4.5e-53 211.5 149 73.8
Sabra08G0117400 Salix brachista HOM05D000384 ORTHO05D006260 4.5e-53 211.5 144 76.4
Aqoxy1G01533 Aquilegia oxysepala HOM05D000384 ORTHO05D006260 1.0e-52 210.3 143 75.5
Aqoxy5G00465 Aquilegia oxysepala HOM05D000384 ORTHO05D006260 1.0e-52 210.3 143 75.5
FvH4_4g15650 Fragaria vesca HOM05D000384 ORTHO05D006260 1.3e-52 209.9 145 75.2
FAN12G1863 Fragaria x ananassa HOM05D000384 ORTHO05D006260 1.3e-52 209.9 145 75.2
FAN17G0123 Fragaria x ananassa HOM05D000384 ORTHO05D006260 1.3e-52 209.9 145 74.5
FAN22G1586 Fragaria x ananassa HOM05D000384 ORTHO05D006260 1.3e-52 209.9 145 75.2
ECA247G4089 Erigeron canadensis HOM05D000384 ORTHO05D006260 2.2e-52 209.1 146 74.7
CiPaw.01G166600 Carya illinoinensis HOM05D000384 ORTHO05D006260 2.9e-52 208.8 149 73.8
PSO210G4801 Papaver somniferum HOM05D000384 ORTHO05D006260 3.8e-52 208.4 140 77.1
SalBow3G1001 Salvia bowleyana HOM05D000384 ORTHO05D006260 3.8e-52 208.4 134 79.1
TWI53G0398 Tripterygium wilfordii HOM05D000384 ORTHO05D006260 3.8e-52 208.4 141 77.3
HanXRQChr08g0229211 Helianthus annuus HOM05D000384 ORTHO05D006260 5.0e-52 208.0 146 74.0
PSO832G3877 Papaver somniferum HOM05D000384 ORTHO05D006260 5.0e-52 208.0 140 77.1
unitig_699.g19994 Utricularia gibba HOM05D000384 ORTHO05D006260 1.1e-51 206.8 142 77.5
PGR004G2612 Punica granatum HOM05D000384 ORTHO05D006260 3.2e-51 205.3 145 72.4
Zm00001eb114150 Zea mays HOM05D000384 ORTHO05D006260 9.4e-51 203.8 145 73.1
Solyc06g053460.3 Solanum lycopersicum HOM05D000384 ORTHO05D006260 3.6e-50 201.8 124 83.1
Oeu050282.1 Olea europaea HOM05D000384 ORTHO05D006260 4.7e-50 201.4 145 73.1
Os12g0485800 Oryza sativa ssp. japonica HOM05D000384 ORTHO05D006260 4.7e-50 201.4 144 72.9
Zm00001eb415970 Zea mays HOM05D000384 ORTHO05D006260 1.0e-49 200.3 145 70.3
Lsat_1_v5_gn_9_18461 Lactuca sativa HOM05D000384 ORTHO05D006260 2.3e-49 199.1 140 74.3
Os11g0568500 Oryza sativa ssp. japonica HOM05D000384 ORTHO05D006260 5.2e-49 198.0 146 70.5
THA.LOC104803028 Tarenaya hassleriana HOM05D000384 ORTHO05D006260 2.6e-48 195.7 149 67.8
SEGI_35673 Sequoiadendron giganteum HOM05D000384 ORTHO05D006260 1.3e-47 193.4 144 70.8
Aa31LG8G9040 Aethionema arabicum HOM05D000384 ORTHO05D006260 2.8e-47 192.2 148 66.2
THA.LOC104822267 Tarenaya hassleriana HOM05D000384 ORTHO05D006260 3.7e-47 191.8 149 67.1
C03p52530 Brassica napus HOM05D000384 ORTHO05D006260 1.6e-45 186.4 140 68.6
CARHR098380 Cardamine hirsuta HOM05D000384 ORTHO05D006260 2.0e-45 186.0 139 68.3
BcaC01g03444 Brassica carinata HOM05D000384 ORTHO05D006260 4.5e-45 184.9 140 67.9
BolC3t17522H Brassica oleracea HOM05D000384 ORTHO05D006260 4.5e-45 184.9 140 67.9
Thhalv10021707m.g Eutrema salsugineum HOM05D000384 ORTHO05D006260 5.9e-45 184.5 139 67.6
BraA03t13424Z Brassica rapa HOM05D000384 ORTHO05D006260 1.7e-44 183.0 141 66.7
BcaC05g28063 Brassica carinata HOM05D000384 ORTHO05D006260 2.9e-44 182.2 139 67.6
C05p40760 Brassica napus HOM05D000384 ORTHO05D006260 2.9e-44 182.2 139 67.6
BolC5t32821H Brassica oleracea HOM05D000384 ORTHO05D006260 2.9e-44 182.2 139 67.6
ATR0083G069 Amborella trichopoda HOM05D000384 ORTHO05D006260 3.8e-44 181.8 141 68.1
A03p42770 Brassica napus HOM05D000384 ORTHO05D006260 3.8e-44 181.8 142 65.5
A05p26280 Brassica napus HOM05D000384 ORTHO05D006260 8.6e-44 180.6 141 66.0
BcaB06g26358 Brassica carinata HOM05D000384 ORTHO05D006260 2.5e-43 179.1 136 67.6
TAR365G0396 Trochodendron aralioides HOM05D000384 ORTHO05D006260 2.5e-43 179.1 120 77.5
BcaB04g19201 Brassica carinata HOM05D000384 ORTHO05D006260 3.3e-43 178.7 137 65.7
BraA05t21503Z Brassica rapa HOM05D000384 ORTHO05D006260 3.3e-43 178.7 137 66.4
AT3G22480 Arabidopsis thaliana HOM05D000384 ORTHO05D006260 5.5e-43 177.9 139 64.7
HanXRQChr04g0103741 Helianthus annuus HOM05D000384 ORTHO05D006260 7.2e-43 177.6 118 77.1
AL3G36790 Arabidopsis lyrata HOM05D000384 ORTHO05D006260 1.2e-42 176.8 139 66.2
Carub.0003s2264 Capsella rubella HOM05D000384 ORTHO05D006260 2.8e-42 175.6 139 66.2
Mapoly0049s0105 Marchantia polymorpha HOM05D000384 ORTHO05D006260 1.0e-41 173.7 138 67.4
AagrBONN_evm.TU.Sc2ySwM_344.1360 Anthoceros agrestis HOM05D000384 ORTHO05D006260 2.3e-41 172.6 137 63.5
Ah.04g163960 Amaranthus hybridus HOM05D000384 ORTHO05D006260 6.8e-41 171.0 149 62.4
C05p40680 Brassica napus HOM05D000384 ORTHO05D006260 1.2e-40 170.2 139 65.5
BolC5t32807H Brassica oleracea HOM05D000384 ORTHO05D006260 1.2e-40 170.2 139 65.5
SMO169G0080 Selaginella moellendorffii HOM05D000384 ORTHO05D006260 9.8e-40 167.2 138 62.3
Sp3g20250 Schrenkiella parvula HOM05D000384 ORTHO05D006260 4.5e-37 158.3 139 59.0
CBR_g42063 Chara braunii HOM05D000384 ORTHO05D006260 3.8e-36 155.2 141 58.9
Pp3c23_10300 Physcomitrium patens HOM05D000384 ORTHO05D006260 1.2e-34 150.2 133 60.9
AagrBONN_evm.TU.Sc2ySwM_228.3583 Anthoceros agrestis HOM05D000384 ORTHO05D006260 4.9e-31 138.3 103 63.1
HPP92_018608 Vanilla planifolia HOM05D000384 ORTHO05D006260 1.1e-30 137.1 131 58.0
Pp3c24_3120 Physcomitrium patens HOM05D000384 ORTHO05D006260 1.4e-30 136.7 134 57.5
HPP92_018610 Vanilla planifolia HOM05D000384 ORTHO05D006260 2.2e-23 112.8 89 66.3
Hma1.2p1_0602F.1_g187390 Hydrangea macrophylla HOM05D000384 ORTHO05D006260 4.1e-22 108.6 109 57.8
MCO05G108 Micromonas commoda HOM05D000384 ORTHO05D006260 1.6e-21 106.7 130 43.1
BcaC05g28047 Brassica carinata HOM05D000384 ORTHO05D006260 2.7e-21 105.9 96 59.4
Cre07.g342250 Chlamydomonas reinhardtii HOM05D000384 ORTHO05D006260 2.3e-20 102.8 138 42.8
PRCOL_00004688 Prasinoderma coloniale HOM05D000384 ORTHO05D006260 1.2e-13 80.5 86 47.7
CDE09G0159 Ceratophyllum demersum HOM05D000384 ORTHO05D006260 6.0e-13 78.2 46 78.3


User provided reference genes

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