Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim04G0201500 Rhododendron simsii HOM05D005574 ORTHO05D007102 2.1e-200 702.2 367 100.0
CSS0019466 Camellia sinensis var. sinensis HOM05D005574 ORTHO05D007102 3.3e-121 439.1 332 66.9
Dinv44545 Davidia involucrata HOM05D005574 ORTHO05D007102 3.3e-121 439.1 368 62.8
Actinidia23520 Actinidia chinensis HOM05D005574 ORTHO05D007102 5.3e-119 431.8 362 64.4
Hma1.2p1_0602F.1_g187410 Hydrangea macrophylla HOM05D005574 ORTHO05D007102 3.4e-102 375.9 376 57.7
Peaxi162Scf00092g00614 Petunia axillaris HOM05D005574 ORTHO05D007102 1.1e-100 370.9 335 57.3
TAR362G0087 Trochodendron aralioides HOM05D005574 ORTHO05D007102 5.5e-100 368.6 341 55.7
GSVIVG01017997001 Vitis vinifera HOM05D005574 ORTHO05D007102 1.2e-99 367.5 338 55.6
Haze_00883 Corylus avellana HOM05D005574 ORTHO05D007102 1.8e-98 363.6 374 52.7
Cc03_g03930 Coffea canephora HOM05D005574 ORTHO05D007102 1.5e-97 360.5 372 54.8
Oeu058969.1 Olea europaea HOM05D005574 ORTHO05D007102 3.3e-97 359.4 378 52.4
Cfa015664 Carpinus fangiana HOM05D005574 ORTHO05D007102 9.7e-97 357.8 374 52.4
Nitab4.5_0001920g0060 Nicotiana tabacum HOM05D005574 ORTHO05D007102 1.7e-96 357.1 334 56.3
Prupe.1G015700 Prunus persica HOM05D005574 ORTHO05D007102 1.7e-96 357.1 341 56.3
Thecc.04G192400 Theobroma cacao HOM05D005574 ORTHO05D007102 3.7e-96 355.9 346 53.2
Nitab4.5_0004135g0020 Nicotiana tabacum HOM05D005574 ORTHO05D007102 4.8e-96 355.5 334 55.7
Sopen09g031060 Solanum pennellii HOM05D005574 ORTHO05D007102 1.4e-95 354.0 337 55.2
Solyc09g082180.3 Solanum lycopersicum HOM05D005574 ORTHO05D007102 2.4e-95 353.2 337 54.9
MD16G1195700 Malus domestica HOM05D005574 ORTHO05D007102 9.1e-95 351.3 340 54.7
Nn6g34090 Nelumbo nucifera HOM05D005574 ORTHO05D007102 2.0e-94 350.1 344 50.9
QL06p002087 Quercus lobata HOM05D005574 ORTHO05D007102 5.9e-94 348.6 341 53.4
CiPaw.02G098000 Carya illinoinensis HOM05D005574 ORTHO05D007102 1.3e-93 347.4 346 53.2
MD13G1194900 Malus domestica HOM05D005574 ORTHO05D007102 6.5e-93 345.1 340 55.9
RcHm_v2.0_Chr4g0415861 Rosa chinensis HOM05D005574 ORTHO05D007102 5.5e-92 342.0 346 54.6
Atru.chr4.2447 Acer truncatum HOM05D005574 ORTHO05D007102 1.0e-90 337.8 354 52.3
Duzib268G0255 Durio zibethinus HOM05D005574 ORTHO05D007102 1.8e-90 337.0 344 51.5
COL.COLO4_05700 Corchorus olitorius HOM05D005574 ORTHO05D007102 1.1e-89 334.3 346 52.6
Potri.010G086100 Populus trichocarpa HOM05D005574 ORTHO05D007102 1.1e-89 334.3 335 53.1
Sabra10G0057600 Salix brachista HOM05D005574 ORTHO05D007102 1.1e-89 334.3 347 52.2
Dinv14005 Davidia involucrata HOM05D005574 ORTHO05D007102 2.0e-89 333.6 336 54.5
FAN07G2976 Fragaria x ananassa HOM05D005574 ORTHO05D007102 2.8e-88 329.7 353 53.3
FAN02G2947 Fragaria x ananassa HOM05D005574 ORTHO05D007102 3.7e-88 329.3 353 53.0
Ciclev10005241m.g Citrus clementina HOM05D005574 ORTHO05D007102 4.8e-88 328.9 347 52.2
FvH4_4g16270 Fragaria vesca HOM05D005574 ORTHO05D007102 4.8e-88 328.9 353 51.8
FAN12G0525 Fragaria x ananassa HOM05D005574 ORTHO05D007102 4.8e-88 328.9 353 51.8
FAN12G2145 Fragaria x ananassa HOM05D005574 ORTHO05D007102 4.8e-88 328.9 353 51.8
FAN12G2997 Fragaria x ananassa HOM05D005574 ORTHO05D007102 4.8e-88 328.9 353 51.8
Gorai.011G151700 Gossypium raimondii HOM05D005574 ORTHO05D007102 2.0e-86 323.6 353 50.4
MSTRG.4036 Avicennia marina HOM05D005574 ORTHO05D007102 2.6e-86 323.2 377 52.5
Gohir.A10G129500 Gossypium hirsutum HOM05D005574 ORTHO05D007102 2.9e-85 319.7 381 48.3
Gohir.D10G136700 Gossypium hirsutum HOM05D005574 ORTHO05D007102 6.5e-85 318.5 353 50.4
TWI53G0495 Tripterygium wilfordii HOM05D005574 ORTHO05D007102 8.5e-85 318.2 340 51.2
DCAR_030644 Daucus carota HOM05D005574 ORTHO05D007102 1.9e-84 317.0 340 52.4
Glyma.10G247300 Glycine max HOM05D005574 ORTHO05D007102 8.0e-83 311.6 347 49.9
Glyma.20G147200 Glycine max HOM05D005574 ORTHO05D007102 1.4e-82 310.8 336 50.9
Lj5g0023935 Lotus japonicus HOM05D005574 ORTHO05D007102 4.0e-82 309.3 345 49.9
MSTRG.9977 Avicennia marina HOM05D005574 ORTHO05D007102 2.6e-81 306.6 357 50.1
CANSAT78G2217 Cannabis sativa HOM05D005574 ORTHO05D007102 2.6e-81 306.6 318 51.9
Manes.03G177100 Manihot esculenta HOM05D005574 ORTHO05D007102 5.7e-81 305.4 343 47.8
PSO210G4004 Papaver somniferum HOM05D005574 ORTHO05D007102 6.3e-80 302.0 337 48.4
VMungo0720G0566 Vigna mungo HOM05D005574 ORTHO05D007102 5.3e-79 298.9 339 49.6
Migut.G00347 Erythranthe guttata HOM05D005574 ORTHO05D007102 7.0e-79 298.5 376 47.1
CsaV3_3G013190 Cucumis sativus L. HOM05D005574 ORTHO05D007102 1.2e-78 297.7 336 47.0
MELO3C006525.2 Cucumis melo HOM05D005574 ORTHO05D007102 5.9e-78 295.4 372 45.7
Medtr1g103560 Medicago truncatula HOM05D005574 ORTHO05D007102 1.0e-77 294.7 334 47.6
TPR.G5479 Trifolium pratense HOM05D005574 ORTHO05D007102 1.3e-77 294.3 351 45.6
arahy.Tifrunner.gnm1.ann1.PUQJ4X Arachis hypogaea HOM05D005574 ORTHO05D007102 1.7e-77 293.9 343 48.1
Ca_10888_v3 Cicer arietinum L. HOM05D005574 ORTHO05D007102 1.7e-77 293.9 314 49.0
arahy.Tifrunner.gnm1.ann1.R5YE9W Arachis hypogaea HOM05D005574 ORTHO05D007102 2.2e-77 293.5 340 47.9
ClCG05G005090 Citrullus lanatus HOM05D005574 ORTHO05D007102 2.9e-77 293.1 336 47.0
SalBow2G1029 Salvia bowleyana HOM05D005574 ORTHO05D007102 3.8e-77 292.7 360 46.9
Aqoxy2G03411 Aquilegia oxysepala HOM05D005574 ORTHO05D007102 5.0e-77 292.4 353 45.6
Sed0003604 Sechium edule HOM05D005574 ORTHO05D007102 5.0e-77 292.4 337 47.5
SGA_v2.0_scaffold257G45710 Striga asiatica HOM05D005574 ORTHO05D007102 1.1e-76 291.2 346 48.6
Phvul.007G058100 Phaseolus vulgaris HOM05D005574 ORTHO05D007102 1.9e-76 290.4 347 47.6
Sed0027704 Sechium edule HOM05D005574 ORTHO05D007102 2.7e-75 286.6 329 47.1
Psat6g206920 Pisum sativum HOM05D005574 ORTHO05D007102 1.0e-74 284.6 325 47.4
Hund12118 Selenicereus undatus HOM05D005574 ORTHO05D007102 2.3e-74 283.5 316 50.0
AUR62034712 Chenopodium quinoa HOM05D005574 ORTHO05D007102 2.6e-73 280.0 327 46.2
EL10Ac3g06494 Beta vulgaris HOM05D005574 ORTHO05D007102 7.5e-73 278.5 335 44.5
Sp1g04310 Schrenkiella parvula HOM05D005574 ORTHO05D007102 8.3e-72 275.0 348 45.4
Ah.13g071610 Amaranthus hybridus HOM05D005574 ORTHO05D007102 7.0e-71 271.9 326 46.6
PSO761G0453 Papaver somniferum HOM05D005574 ORTHO05D007102 2.0e-70 270.4 330 46.7
Duzib151G0572 Durio zibethinus HOM05D005574 ORTHO05D007102 7.7e-70 268.5 293 47.8
Sc19g0004060 Simmondsia chinensis HOM05D005574 ORTHO05D007102 1.0e-69 268.1 308 48.7
THA.LOC104800960 Tarenaya hassleriana HOM05D005574 ORTHO05D007102 5.0e-69 265.8 342 45.0
AL1G15280 Arabidopsis lyrata HOM05D005574 ORTHO05D007102 7.2e-68 261.9 345 44.6
Lalb_Chr02g0140631 Lupinus albus HOM05D005574 ORTHO05D007102 2.1e-67 260.4 327 44.0
Lsat_1_v5_gn_5_104360 Lactuca sativa HOM05D005574 ORTHO05D007102 8.9e-66 255.0 315 46.0
AUR62033680 Chenopodium quinoa HOM05D005574 ORTHO05D007102 1.5e-65 254.2 293 46.4
BcaC05g24386 Brassica carinata HOM05D005574 ORTHO05D007102 2.6e-65 253.4 344 45.3
C05p03780 Brassica napus HOM05D005574 ORTHO05D007102 2.6e-65 253.4 344 45.3
BolC5t29155H Brassica oleracea HOM05D005574 ORTHO05D007102 2.6e-65 253.4 344 45.3
Thhalv10002568m.g Eutrema salsugineum HOM05D005574 ORTHO05D007102 4.4e-65 252.7 348 43.1
BcaB02g06860 Brassica carinata HOM05D005574 ORTHO05D007102 8.3e-64 248.4 336 44.3
A10p04140 Brassica napus HOM05D005574 ORTHO05D007102 7.0e-63 245.4 331 43.2
BraA10t42684Z Brassica rapa HOM05D005574 ORTHO05D007102 9.2e-63 245.0 332 43.7
CAN.G2204.2 Capsicum annuum HOM05D000340 ORTHO05D007102 4.5e-62 242.7 195 60.0
Carub.0001s0477 Capsella rubella HOM05D005574 ORTHO05D007102 5.0e-61 239.2 344 40.7
ATR0697G187 Amborella trichopoda HOM05D005574 ORTHO05D007102 3.3e-60 236.5 346 41.0
CDE07G0532 Ceratophyllum demersum HOM05D005574 ORTHO05D007102 5.6e-60 235.7 343 40.5
Potri.008G154400 Populus trichocarpa HOM05D005574 ORTHO05D007102 7.3e-60 235.3 250 52.4
Eucgr.B01081 Eucalyptus grandis HOM05D005574 ORTHO05D007102 1.6e-59 234.2 319 44.2
Aa31LG1G19200 Aethionema arabicum HOM05D005574 ORTHO05D007102 3.0e-58 229.9 312 45.5
HanXRQChr10g0294751 Helianthus annuus HOM05D005574 ORTHO05D007102 5.2e-58 229.2 326 43.6
CAN.G2204.4 Capsicum annuum HOM05D005574 ORTHO05D007102 1.5e-57 227.6 271 46.9
CARHR004930 Cardamine hirsuta HOM05D005574 ORTHO05D007102 1.5e-57 227.6 335 42.4
PGR142G0953 Punica granatum HOM05D005574 ORTHO05D007102 2.2e-56 223.8 346 40.2
ECA234G0493 Erigeron canadensis HOM05D005574 ORTHO05D007102 3.7e-56 223.0 310 44.8
MBI15_g31435_MAGBIO Magnolia biondii HOM05D005574 ORTHO05D007102 3.1e-50 203.4 254 42.1
AT1G05440 Arabidopsis thaliana HOM05D005574 ORTHO05D007102 9.8e-49 198.4 374 37.2
HPP92_009613 Vanilla planifolia HOM05D005574 ORTHO05D007102 9.5e-44 181.8 336 34.8
SEGI_38250 Sequoiadendron giganteum HOM05D005574 ORTHO05D007102 5.2e-42 176.0 335 32.2
unitig_32.g11728 Utricularia gibba HOM05D005574 ORTHO05D007102 5.2e-42 176.0 377 36.3
CDE06G2673 Ceratophyllum demersum HOM05D005574 ORTHO05D007102 1.2e-41 174.9 256 43.0
Actinidia40140 Actinidia chinensis HOM05D005574 ORTHO05D007102 2.0e-41 174.1 131 67.2
Zm00001eb057090 Zea mays HOM05D005574 ORTHO05D007102 1.7e-40 171.0 326 34.7
Os03g0747100 Oryza sativa ssp. japonica HOM05D005574 ORTHO05D007102 6.0e-38 162.5 317 34.7
Cpa.g.sc58.90 Carica papaya HOM05D005574 ORTHO05D007102 1.1e-36 158.3 130 53.8
SMO174G0025 Selaginella moellendorffii HOM05D005574 ORTHO05D007102 3.4e-33 146.7 292 33.6
BolC1t04542H Brassica oleracea HOM05D005574 ORTHO05D007102 5.4e-31 139.4 204 39.7
BolC5t33236H Brassica oleracea HOM05D005574 ORTHO05D007102 7.1e-31 139.0 195 41.0
ECA234G4095 Erigeron canadensis HOM05D005574 ORTHO05D007102 7.1e-31 139.0 173 42.8
C01p35960 Brassica napus HOM05D005574 ORTHO05D007102 2.7e-30 137.1 156 46.2
AagrBONN_evm.TU.Sc2ySwM_117.3111 Anthoceros agrestis HOM05D005574 ORTHO05D007102 5.8e-25 119.4 265 33.2
C03p05690 Brassica napus HOM05D005574 ORTHO05D022054 1.7e-24 117.9 102 52.9
BolC1t03554H Brassica oleracea HOM05D005574 ORTHO05D022054 2.7e-22 110.5 88 54.5
BcaC07g42131 Brassica carinata HOM05D005574 ORTHO05D007102 1.4e-18 98.2 111 42.3
C08p51720 Brassica napus HOM05D005574 ORTHO05D007102 1.4e-18 98.2 111 42.3
A09p67440 Brassica napus HOM05D005574 ORTHO05D007102 7.6e-17 92.4 96 45.8
BcaC09g49493 Brassica carinata HOM05D005574 ORTHO05D007102 2.9e-16 90.5 154 38.3
A02p27770 Brassica napus HOM05D005574 ORTHO05D007102 1.1e-15 88.6 108 47.2
BraA02t07818Z Brassica rapa HOM05D005574 ORTHO05D007102 1.1e-15 88.6 108 47.2
A03p47670 Brassica napus HOM05D005574 ORTHO05D007102 4.2e-15 86.7 107 45.8
BolC3t13081H Brassica oleracea HOM05D005574 ORTHO05D007102 4.2e-15 86.7 127 42.5
BraA07t27929Z Brassica rapa HOM05D005574 ORTHO05D007102 4.2e-15 86.7 108 46.3
BraA09t37853Z Brassica rapa HOM05D005574 ORTHO05D007102 4.2e-15 86.7 107 45.8
BraA09t41109Z Brassica rapa HOM05D005574 ORTHO05D007102 9.3e-15 85.5 109 47.7
BcaB07g33702 Brassica carinata HOM05D005574 ORTHO05D007102 7.9e-14 82.4 200 32.0
Sabra08G0117800 Salix brachista HOM05D000633 ORTHO05D000477 2.3e-13 80.9 82 47.6
A09p57160 Brassica napus HOM05D005574 ORTHO05D007102 1.1e-12 78.6 61 60.7
BcaC09g48798 Brassica carinata HOM05D005574 ORTHO05D007102 7.4e-12 75.9 97 44.3
C01p45800 Brassica napus HOM05D005574 ORTHO05D007102 2.8e-11 73.9 155 32.3
BcaC07g42130 Brassica carinata HOM05D005574 ORTHO05D007102 2.2e-08 64.3 110 38.2


User provided reference genes

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